Wall clock time and date at job start Wed Apr 1 2020 04:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35729 * 117.00192 * 2 1 4 4 C 1.38460 * 120.07709 * 0.02842 * 3 2 1 5 5 C 1.38600 * 120.18156 * 179.97438 * 4 3 2 6 6 C 1.39733 * 120.14590 * 359.75556 * 5 4 3 7 7 C 1.37898 * 120.10823 * 0.49305 * 6 5 4 8 8 C 1.39928 * 119.97913 * 359.50469 * 7 6 5 9 9 C 1.47289 * 120.13184 * 180.27320 * 8 7 6 10 10 O 1.21622 * 120.00679 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99828 * 359.97438 * 9 8 7 12 12 C 1.46506 * 119.99884 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47244 * 35.00293 * 12 11 9 14 14 C 1.50698 * 109.47063 * 155.00249 * 12 11 9 15 15 H 1.08004 * 119.99931 * 116.77029 * 14 12 11 16 16 C 1.37878 * 120.00267 * 296.78186 * 14 12 11 17 17 N 1.31509 * 120.00138 * 173.83641 * 16 14 12 18 18 Si 1.86803 * 119.99581 * 353.82992 * 16 14 12 19 19 H 1.48497 * 109.47115 * 85.15590 * 18 16 14 20 20 H 1.48508 * 109.46663 * 205.15581 * 18 16 14 21 21 H 1.48495 * 109.47301 * 325.15238 * 18 16 14 22 22 C 1.53003 * 109.47148 * 275.00402 * 12 11 9 23 23 F 1.39893 * 109.47051 * 65.23367 * 22 12 11 24 24 F 1.39896 * 109.46898 * 185.23338 * 22 12 11 25 25 F 1.39903 * 109.47022 * 305.22971 * 22 12 11 26 26 O 1.36633 * 108.53546 * 179.81986 * 6 5 4 27 27 C 1.43970 * 105.51251 * 343.02613 * 26 6 5 28 28 O 1.36367 * 131.28931 * 180.02562 * 5 4 3 29 29 H 1.09009 * 109.47163 * 299.99803 * 1 2 3 30 30 H 1.08996 * 109.47342 * 59.99377 * 1 2 3 31 31 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 32 32 H 1.08007 * 119.90625 * 359.97438 * 4 3 2 33 33 H 1.08005 * 120.00952 * 179.78407 * 7 6 5 34 34 H 0.96998 * 120.00424 * 0.02562 * 11 9 8 35 35 H 0.97001 * 120.00217 * 179.97438 * 17 16 14 36 36 H 1.08995 * 110.56514 * 268.44988 * 27 26 6 37 37 H 1.09004 * 110.55704 * 145.61216 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2927 2.3716 0.0006 5 6 1.9197 3.6077 0.0011 6 6 3.3148 3.6868 0.0062 7 6 4.0730 2.5351 0.0005 8 6 3.4451 1.2846 0.0000 9 6 4.2518 0.0522 -0.0001 10 8 3.7036 -1.0335 -0.0009 11 7 5.5974 0.1276 -0.0002 12 6 6.3998 -1.0982 0.0003 13 1 5.8944 -1.8635 -0.5887 14 6 7.7523 -0.8136 -0.6003 15 1 8.6433 -0.9200 0.0008 16 6 7.8523 -0.4171 -1.9170 17 7 9.0167 -0.0520 -2.4072 18 14 6.3337 -0.3985 -3.0047 19 1 5.6114 0.8864 -2.8245 20 1 6.7408 -0.5426 -4.4256 21 1 5.4418 -1.5247 -2.6287 22 6 6.5739 -1.5932 1.4376 23 9 5.3300 -1.9703 1.9548 24 9 7.4374 -2.6938 1.4503 25 9 7.1137 -0.5680 2.2217 26 8 3.6750 5.0048 0.0016 27 6 2.4983 5.7242 -0.4113 28 8 1.4130 4.8737 0.0022 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2141 2.3148 0.0006 33 1 5.1512 2.5981 0.0009 34 1 6.0347 0.9934 0.0002 35 1 9.0872 0.2266 -3.3337 36 1 2.4902 5.8563 -1.4932 37 1 2.4425 6.6887 0.0934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361639860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:13 Heat of formation + Delta-G solvation = -249.759153 kcal Electronic energy + Delta-G solvation = -31820.118200 eV Core-core repulsion = 26728.792275 eV Total energy + Delta-G solvation = -5091.325925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.05339 -46.56019 -46.54265 -42.35541 -40.12329 -38.64839 -36.54296 -36.33595 -34.84007 -32.53083 -31.18269 -29.81706 -28.90269 -27.40271 -25.91115 -24.98740 -23.93651 -22.64781 -21.50803 -20.28439 -18.84913 -18.62519 -17.88431 -17.67058 -17.47886 -17.29685 -16.69198 -16.43201 -15.96328 -15.77589 -15.60899 -15.23862 -14.85725 -14.66066 -14.13419 -14.02436 -13.76635 -13.44438 -13.40670 -13.28355 -13.16657 -13.00682 -12.91595 -12.83945 -12.73820 -12.64121 -12.57351 -11.89916 -11.83011 -11.68380 -11.48118 -11.14349 -10.64686 -10.30421 -10.18222 -9.88733 -9.42592 -9.05157 -8.95464 -8.44839 -7.89027 -6.49865 -4.62887 0.63910 1.08486 2.43820 2.94549 3.11727 3.14526 3.23112 3.23962 3.32802 3.59582 3.79411 4.00556 4.13570 4.21134 4.42029 4.62991 4.71002 4.78138 4.91415 4.98304 5.01459 5.03792 5.09248 5.22158 5.24794 5.37160 5.40132 5.52002 5.74243 5.79413 5.92783 6.08829 6.45371 6.80147 6.90982 7.08151 7.23901 7.86743 8.26175 8.53226 8.80252 9.04581 10.58408 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.004562 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.955857 B = 6135.536846 C = 6930.723703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.267 6.267 3 C 0.198 3.802 4 C -0.207 4.207 5 C 0.096 3.904 6 C -0.016 4.016 7 C -0.025 4.025 8 C -0.158 4.158 9 C 0.549 3.451 10 O -0.513 6.513 11 N -0.714 5.714 12 C 0.204 3.796 13 H 0.093 0.907 14 C -0.538 4.538 15 H 0.096 0.904 16 C 0.098 3.902 17 N -0.862 5.862 18 Si 0.871 3.129 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.256 1.256 22 C 0.442 3.558 23 F -0.192 7.192 24 F -0.184 7.184 25 F -0.190 7.190 26 O -0.303 6.303 27 C 0.213 3.787 28 O -0.307 6.307 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.399 0.601 35 H 0.274 0.726 36 H 0.085 0.915 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 8.972 2.691 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.177 6.177 3 C 0.149 3.851 4 C -0.226 4.226 5 C 0.051 3.949 6 C -0.060 4.060 7 C -0.045 4.045 8 C -0.162 4.162 9 C 0.335 3.665 10 O -0.390 6.390 11 N -0.368 5.368 12 C 0.101 3.899 13 H 0.111 0.889 14 C -0.575 4.575 15 H 0.114 0.886 16 C -0.111 4.111 17 N -0.495 5.495 18 Si 0.697 3.303 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.180 1.180 22 C 0.387 3.613 23 F -0.174 7.174 24 F -0.166 7.166 25 F -0.171 7.171 26 O -0.220 6.220 27 C 0.101 3.899 28 O -0.223 6.223 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.510 8.225 2.660 17.756 hybrid contribution -0.726 1.007 -0.469 1.328 sum -16.236 9.233 2.191 18.805 Atomic orbital electron populations 1.23211 0.78804 1.04543 1.01175 1.86497 1.20665 1.24055 1.86478 1.18481 0.90547 0.84284 0.91769 1.19899 1.00870 0.87759 1.14076 1.19596 0.90734 0.85956 0.98653 1.19373 0.91663 0.85239 1.09688 1.20101 1.00634 0.87165 0.96562 1.19292 0.90851 0.93699 1.12358 1.17981 0.82914 0.88056 0.77501 1.90814 1.71598 1.28056 1.48520 1.47441 1.04832 1.11145 1.73416 1.20254 0.95277 0.87151 0.87241 0.88913 1.20800 0.89609 1.49493 0.97627 0.88608 1.24884 0.96316 0.92554 0.97371 1.69870 1.24191 1.39651 1.15822 0.86883 0.83183 0.80495 0.79733 1.19339 1.21148 1.18015 1.21452 0.72848 0.75201 0.91812 1.93152 1.43152 1.91770 1.89303 1.93106 1.70953 1.55446 1.97049 1.93084 1.86462 1.59806 1.77778 1.87415 1.34880 1.14294 1.85414 1.25650 0.70922 0.93074 1.00255 1.87309 1.36541 1.14272 1.84154 0.92496 0.92565 0.87707 0.83581 0.83112 0.76309 0.91552 0.89731 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.17 16 2 O -0.27 -4.19 8.55 -40.85 -0.35 -4.54 16 3 C 0.20 3.09 6.69 -38.76 -0.26 2.83 16 4 C -0.21 -2.64 9.04 -39.37 -0.36 -3.00 16 5 C 0.10 1.28 7.15 -38.89 -0.28 1.00 16 6 C -0.02 -0.23 7.14 -39.15 -0.28 -0.51 16 7 C -0.03 -0.39 9.54 -39.07 -0.37 -0.76 16 8 C -0.16 -2.75 5.89 -104.85 -0.62 -3.37 16 9 C 0.55 11.37 7.15 -12.58 -0.09 11.28 16 10 O -0.51 -11.91 13.71 -16.70 -0.23 -12.14 16 11 N -0.71 -14.95 3.16 -56.05 -0.18 -15.13 16 12 C 0.20 4.72 1.41 -69.08 -0.10 4.63 16 13 H 0.09 2.27 6.28 -51.93 -0.33 1.95 16 14 C -0.54 -13.73 8.64 -34.44 -0.30 -14.03 16 15 H 0.10 2.66 7.91 -52.48 -0.42 2.24 16 16 C 0.10 2.54 5.46 -17.82 -0.10 2.45 16 17 N -0.86 -23.58 13.96 55.43 0.77 -22.81 16 18 Si 0.87 20.25 26.15 -169.99 -4.44 15.81 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.26 -6.14 6.55 56.52 0.37 -5.77 16 22 C 0.44 9.85 2.79 37.16 0.10 9.95 16 23 F -0.19 -4.27 15.84 2.25 0.04 -4.23 16 24 F -0.18 -4.12 16.83 2.25 0.04 -4.08 16 25 F -0.19 -4.11 16.97 2.25 0.04 -4.07 16 26 O -0.30 -3.93 11.41 -46.12 -0.53 -4.45 16 27 C 0.21 1.93 8.88 101.05 0.90 2.83 16 28 O -0.31 -3.58 11.39 -45.25 -0.52 -4.09 16 29 H 0.06 0.46 7.66 -51.92 -0.40 0.06 16 30 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.15 1.43 6.28 -52.48 -0.33 1.10 16 33 H 0.15 2.17 6.39 -52.48 -0.34 1.84 16 34 H 0.40 7.66 6.61 -40.82 -0.27 7.39 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -31.54 329.86 -4.04 -35.58 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -2.91 Total: 4.72 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: -0.75 Total: 14.47 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.60 Total: -37.93 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.62 Total: -25.23 kcal Atomic # 9 Polarization: -12.49 SS G_CDS: 0.11 Total: -12.38 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.44 Total: 15.81 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.54 -4.04 -35.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361639860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.180 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds