Wall clock time and date at job start Wed Apr 1 2020 04:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35729 * 117.00192 * 2 1 4 4 C 1.38460 * 120.07709 * 0.02842 * 3 2 1 5 5 C 1.38600 * 120.18156 * 179.97438 * 4 3 2 6 6 C 1.39733 * 120.14590 * 359.75556 * 5 4 3 7 7 C 1.37898 * 120.10823 * 0.49305 * 6 5 4 8 8 C 1.39928 * 119.97913 * 359.50469 * 7 6 5 9 9 C 1.47289 * 120.13184 * 180.27320 * 8 7 6 10 10 O 1.21622 * 120.00679 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99828 * 359.97438 * 9 8 7 12 12 C 1.46506 * 119.99884 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47244 * 35.00293 * 12 11 9 14 14 C 1.50698 * 109.47063 * 155.00249 * 12 11 9 15 15 H 1.08004 * 119.99931 * 116.77029 * 14 12 11 16 16 C 1.37878 * 120.00267 * 296.78186 * 14 12 11 17 17 N 1.31509 * 120.00138 * 173.83641 * 16 14 12 18 18 Si 1.86803 * 119.99581 * 353.82992 * 16 14 12 19 19 H 1.48497 * 109.47115 * 85.15590 * 18 16 14 20 20 H 1.48508 * 109.46663 * 205.15581 * 18 16 14 21 21 H 1.48495 * 109.47301 * 325.15238 * 18 16 14 22 22 C 1.53003 * 109.47148 * 275.00402 * 12 11 9 23 23 F 1.39893 * 109.47051 * 65.23367 * 22 12 11 24 24 F 1.39896 * 109.46898 * 185.23338 * 22 12 11 25 25 F 1.39903 * 109.47022 * 305.22971 * 22 12 11 26 26 O 1.36633 * 108.53546 * 179.81986 * 6 5 4 27 27 C 1.43970 * 105.51251 * 343.02613 * 26 6 5 28 28 O 1.36367 * 131.28931 * 180.02562 * 5 4 3 29 29 H 1.09009 * 109.47163 * 299.99803 * 1 2 3 30 30 H 1.08996 * 109.47342 * 59.99377 * 1 2 3 31 31 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 32 32 H 1.08007 * 119.90625 * 359.97438 * 4 3 2 33 33 H 1.08005 * 120.00952 * 179.78407 * 7 6 5 34 34 H 0.96998 * 120.00424 * 0.02562 * 11 9 8 35 35 H 0.97001 * 120.00217 * 179.97438 * 17 16 14 36 36 H 1.08995 * 110.56514 * 268.44988 * 27 26 6 37 37 H 1.09004 * 110.55704 * 145.61216 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2927 2.3716 0.0006 5 6 1.9197 3.6077 0.0011 6 6 3.3148 3.6868 0.0062 7 6 4.0730 2.5351 0.0005 8 6 3.4451 1.2846 0.0000 9 6 4.2518 0.0522 -0.0001 10 8 3.7036 -1.0335 -0.0009 11 7 5.5974 0.1276 -0.0002 12 6 6.3998 -1.0982 0.0003 13 1 5.8944 -1.8635 -0.5887 14 6 7.7523 -0.8136 -0.6003 15 1 8.6433 -0.9200 0.0008 16 6 7.8523 -0.4171 -1.9170 17 7 9.0167 -0.0520 -2.4072 18 14 6.3337 -0.3985 -3.0047 19 1 5.6114 0.8864 -2.8245 20 1 6.7408 -0.5426 -4.4256 21 1 5.4418 -1.5247 -2.6287 22 6 6.5739 -1.5932 1.4376 23 9 5.3300 -1.9703 1.9548 24 9 7.4374 -2.6938 1.4503 25 9 7.1137 -0.5680 2.2217 26 8 3.6750 5.0048 0.0016 27 6 2.4983 5.7242 -0.4113 28 8 1.4130 4.8737 0.0022 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2141 2.3148 0.0006 33 1 5.1512 2.5981 0.0009 34 1 6.0347 0.9934 0.0002 35 1 9.0872 0.2266 -3.3337 36 1 2.4902 5.8563 -1.4932 37 1 2.4425 6.6887 0.0934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361639860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:13 Heat of formation + Delta-G solvation = -270.700985 kcal Electronic energy + Delta-G solvation = -31821.026306 eV Core-core repulsion = 26728.792275 eV Total energy + Delta-G solvation = -5092.234031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.88151 -48.38741 -48.36352 -43.30587 -41.35031 -40.05813 -37.57758 -37.33880 -36.64980 -34.44477 -32.48447 -30.84281 -30.51718 -28.23134 -26.94958 -26.77383 -25.13376 -23.74436 -23.14535 -21.82506 -20.31816 -19.84200 -19.35993 -19.23250 -18.82434 -18.46034 -18.34286 -18.22986 -17.09629 -16.96711 -16.77729 -16.51654 -16.07061 -15.74060 -15.65743 -15.47248 -15.25972 -15.19402 -14.93984 -14.83288 -14.77616 -14.56331 -14.50047 -14.34602 -14.20927 -14.08046 -13.80975 -13.60145 -13.00228 -12.84492 -12.59189 -12.49648 -12.41440 -12.08417 -11.88727 -11.28978 -11.12590 -10.90437 -10.21077 -10.06266 -8.96232 -8.53006 -6.69656 -0.51393 0.01992 1.25195 1.31566 1.43407 1.45091 1.70317 1.92745 2.11445 2.18417 2.24496 2.38576 2.53654 2.94476 3.17436 3.19313 3.37095 3.45435 3.65349 3.76090 3.79147 3.93378 4.09224 4.22890 4.32819 4.39359 4.41297 4.53010 4.67275 4.72067 4.80790 4.84818 4.95090 5.01448 5.35268 5.85533 5.88189 6.25123 6.43359 6.60718 7.00418 7.19631 8.59312 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.004562 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.955857 B = 6135.536846 C = 6930.723703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.300 6.300 3 C 0.198 3.802 4 C -0.196 4.196 5 C 0.108 3.892 6 C -0.022 4.022 7 C -0.031 4.031 8 C -0.190 4.190 9 C 0.550 3.450 10 O -0.545 6.545 11 N -0.714 5.714 12 C 0.212 3.788 13 H 0.080 0.920 14 C -0.540 4.540 15 H 0.067 0.933 16 C 0.067 3.933 17 N -0.899 5.899 18 Si 0.919 3.081 19 H -0.251 1.251 20 H -0.280 1.280 21 H -0.269 1.269 22 C 0.446 3.554 23 F -0.190 7.190 24 F -0.185 7.185 25 F -0.185 7.185 26 O -0.318 6.318 27 C 0.202 3.798 28 O -0.307 6.307 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.180 0.820 33 H 0.152 0.848 34 H 0.408 0.592 35 H 0.280 0.720 36 H 0.108 0.892 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.020 11.080 2.440 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.211 6.211 3 C 0.149 3.851 4 C -0.215 4.215 5 C 0.061 3.939 6 C -0.066 4.066 7 C -0.050 4.050 8 C -0.194 4.194 9 C 0.339 3.661 10 O -0.423 6.423 11 N -0.369 5.369 12 C 0.107 3.893 13 H 0.098 0.902 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.139 4.139 17 N -0.534 5.534 18 Si 0.743 3.257 19 H -0.175 1.175 20 H -0.206 1.206 21 H -0.194 1.194 22 C 0.390 3.610 23 F -0.171 7.171 24 F -0.167 7.167 25 F -0.167 7.167 26 O -0.235 6.235 27 C 0.092 3.908 28 O -0.222 6.222 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.197 0.803 33 H 0.169 0.831 34 H 0.247 0.753 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -18.230 10.374 2.413 21.113 hybrid contribution 0.017 0.443 -0.326 0.550 sum -18.212 10.816 2.087 21.285 Atomic orbital electron populations 1.23573 0.75991 1.06042 1.03145 1.86453 1.23743 1.24591 1.86313 1.18568 0.90068 0.85246 0.91257 1.20080 1.02238 0.86532 1.12664 1.19747 0.90356 0.86825 0.96927 1.19392 0.92154 0.85591 1.09489 1.20023 1.00818 0.87227 0.96960 1.19009 0.91592 0.92615 1.16220 1.18385 0.82470 0.89019 0.76270 1.90782 1.71970 1.29572 1.49999 1.47077 1.05286 1.10568 1.73934 1.19900 0.94177 0.87727 0.87470 0.90235 1.20718 0.89755 1.49607 0.97656 0.91470 1.25366 0.98181 0.92161 0.98183 1.69934 1.25780 1.41122 1.16523 0.86139 0.80380 0.80693 0.78478 1.17474 1.20588 1.19447 1.21294 0.72900 0.75226 0.91565 1.93156 1.43012 1.91751 1.89210 1.93101 1.71017 1.55521 1.97049 1.93089 1.86404 1.59615 1.77579 1.87403 1.36800 1.13682 1.85620 1.26275 0.68848 0.93338 1.02327 1.87318 1.37404 1.13560 1.83922 0.90464 0.90487 0.86679 0.80275 0.83076 0.75346 0.91049 0.87405 0.81290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.30 -9.03 8.55 -69.53 -0.59 -9.63 16 3 C 0.20 5.85 6.69 22.80 0.15 6.00 16 4 C -0.20 -4.40 9.04 22.41 0.20 -4.20 16 5 C 0.11 2.53 7.15 22.72 0.16 2.69 16 6 C -0.02 -0.59 7.14 22.55 0.16 -0.43 16 7 C -0.03 -0.93 9.54 22.60 0.22 -0.71 16 8 C -0.19 -6.51 5.89 -20.01 -0.12 -6.63 16 9 C 0.55 22.83 7.15 86.62 0.62 23.45 16 10 O -0.54 -25.52 13.71 16.89 0.23 -25.29 16 11 N -0.71 -30.14 3.16 -449.48 -1.42 -31.56 16 12 C 0.21 9.99 1.41 44.24 0.06 10.05 16 13 H 0.08 3.99 6.28 -2.39 -0.02 3.97 16 14 C -0.54 -28.21 8.64 25.60 0.22 -27.99 16 15 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 16 C 0.07 3.53 5.46 84.66 0.46 3.99 16 17 N -0.90 -49.83 13.96 21.45 0.30 -49.53 16 18 Si 0.92 41.92 26.15 68.60 1.79 43.71 16 19 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.27 -12.86 6.55 99.48 0.65 -12.21 16 22 C 0.45 20.11 2.79 71.98 0.20 20.31 16 23 F -0.19 -8.48 15.84 44.97 0.71 -7.77 16 24 F -0.19 -8.42 16.83 44.97 0.76 -7.66 16 25 F -0.19 -8.09 16.97 44.97 0.76 -7.33 16 26 O -0.32 -7.40 11.41 -77.62 -0.89 -8.29 16 27 C 0.20 2.87 8.88 113.37 1.01 3.88 16 28 O -0.31 -5.93 11.39 -74.50 -0.85 -6.78 16 29 H 0.08 0.98 7.66 -2.38 -0.02 0.96 16 30 H 0.08 0.97 7.66 -2.39 -0.02 0.95 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.18 2.72 6.28 -2.91 -0.02 2.70 16 33 H 0.15 4.33 6.39 -2.91 -0.02 4.31 16 34 H 0.41 15.80 6.61 -92.71 -0.61 15.19 16 35 H 0.28 14.42 8.31 -92.71 -0.77 13.64 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.17 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -68.83 329.86 5.78 -63.05 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.51 Total: 15.43 kcal Atomic # 6 Polarization: 27.18 SS G_CDS: 4.46 Total: 31.64 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -1.12 Total: -81.09 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -2.10 Total: -49.99 kcal Atomic # 9 Polarization: -24.99 SS G_CDS: 2.23 Total: -22.75 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.79 Total: 43.71 kcal Total: -68.83 5.78 -63.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361639860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.654 kcal (2) G-P(sol) polarization free energy of solvation -68.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds