Wall clock time and date at job start Wed Apr 1 2020 04:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99905 * 2 1 4 4 C 1.53005 * 109.47088 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47030 * 65.00042 * 4 3 2 6 6 C 1.46498 * 119.99987 * 275.00257 * 5 4 3 7 7 C 1.50707 * 109.46870 * 275.00193 * 6 5 4 8 8 H 1.07995 * 120.00007 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00001 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99853 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00079 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47106 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46945 * 119.99556 * 11 9 7 14 14 H 1.48502 * 109.47125 * 239.99620 * 11 9 7 15 15 S 1.65599 * 119.99923 * 95.00137 * 5 4 3 16 16 O 1.42101 * 106.40096 * 336.45921 * 15 5 4 17 17 O 1.42104 * 106.39941 * 203.53925 * 15 5 4 18 18 C 1.76197 * 107.21957 * 89.99924 * 15 5 4 19 19 O 1.33630 * 125.80658 * 330.26856 * 18 15 5 20 20 C 1.34217 * 110.92458 * 180.16046 * 19 18 15 21 21 C 1.34160 * 109.14291 * 359.60497 * 20 19 18 22 22 C 1.36497 * 125.80963 * 149.99567 * 18 15 5 23 23 C 1.47236 * 127.20106 * 359.97438 * 22 18 15 24 24 O 1.21536 * 119.99760 * 359.97438 * 23 22 18 25 25 O 1.34769 * 119.99754 * 179.97438 * 23 22 18 26 26 C 1.45205 * 116.99561 * 179.97438 * 25 23 22 27 27 H 1.08998 * 109.47392 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47012 * 299.99728 * 1 2 3 29 29 H 1.08998 * 109.47480 * 59.99858 * 1 2 3 30 30 H 1.08999 * 109.47375 * 60.00036 * 3 2 1 31 31 H 1.09005 * 109.47264 * 300.00266 * 3 2 1 32 32 H 1.09001 * 109.46823 * 304.99730 * 4 3 2 33 33 H 1.08998 * 109.46814 * 185.00223 * 4 3 2 34 34 H 1.08994 * 109.47171 * 34.99984 * 6 5 4 35 35 H 1.09003 * 109.47081 * 155.00218 * 6 5 4 36 36 H 0.96997 * 119.99617 * 180.02562 * 10 9 7 37 37 H 1.08002 * 125.43126 * 179.87823 * 20 19 18 38 38 H 1.07999 * 127.02229 * 180.25170 * 21 20 19 39 39 H 1.09005 * 109.46849 * 180.02562 * 26 25 23 40 40 H 1.08996 * 109.47225 * 299.99918 * 26 25 23 41 41 H 1.09002 * 109.46960 * 60.00393 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0003 -0.8950 -1.3782 7 6 5.2993 -1.4246 -0.8275 8 1 6.0332 -0.7423 -0.4248 9 6 5.5513 -2.7801 -0.8388 10 7 4.6577 -3.6109 -1.3297 11 14 7.1617 -3.4365 -0.1569 12 1 7.9901 -2.3051 0.3316 13 1 6.8811 -4.3663 0.9666 14 1 7.8941 -4.1599 -1.2271 15 16 4.4453 1.5131 -2.5263 16 8 3.8177 2.7743 -2.3400 17 8 4.2756 0.7257 -3.6970 18 6 6.1774 1.7898 -2.3596 19 8 6.8548 1.8346 -1.2085 20 6 8.1584 2.0666 -1.4282 21 6 8.3700 2.1725 -2.7487 22 6 7.0565 1.9898 -3.3844 23 6 6.7533 2.0166 -4.8250 24 8 5.6126 1.8480 -5.2090 25 8 7.7406 2.2280 -5.7176 26 6 7.3687 2.2407 -7.1211 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1765 0.0890 34 1 3.1678 -1.3218 -0.8191 35 1 3.9118 -1.1708 -2.4290 36 1 4.8348 -4.5646 -1.3373 37 1 8.9169 2.1501 -0.6639 38 1 9.3125 2.3542 -3.2438 39 1 8.2548 2.4198 -7.7301 40 1 6.9317 1.2791 -7.3900 41 1 6.6405 3.0326 -7.2968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363936664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:36 Heat of formation + Delta-G solvation = -165.292462 kcal Electronic energy + Delta-G solvation = -30297.239627 eV Core-core repulsion = 25886.877145 eV Total energy + Delta-G solvation = -4410.362482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.101 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.51939 -40.10578 -37.73603 -36.74995 -36.37665 -35.41583 -35.26626 -33.10294 -32.55132 -30.14227 -29.50012 -27.94018 -26.76564 -25.64488 -24.15095 -22.82625 -22.02439 -21.85245 -20.76503 -19.04782 -17.99269 -17.24996 -16.99800 -16.62154 -16.47577 -16.25247 -16.05058 -15.80211 -15.59464 -15.22572 -14.99545 -14.53652 -14.42030 -13.85383 -13.51607 -13.24090 -13.20923 -12.83808 -12.63880 -12.33192 -12.08679 -12.05318 -11.90766 -11.67805 -11.57580 -11.27819 -11.19984 -11.06391 -10.87185 -10.77592 -10.65268 -10.47749 -10.35789 -10.04670 -9.96545 -9.73143 -9.25759 -9.12652 -8.41866 -8.08614 -6.04005 -4.09440 0.68648 0.86596 1.92787 2.54977 2.78753 2.98630 3.27254 3.34589 3.36636 3.66064 4.10995 4.19885 4.41458 4.47148 4.75600 4.99023 5.08805 5.18565 5.23233 5.30410 5.31140 5.38691 5.45010 5.51438 5.57588 5.58618 5.68483 5.72374 5.79968 5.98060 6.12546 6.27877 6.30968 6.51336 6.75365 7.41063 7.52752 7.57152 7.73229 7.76280 7.93860 8.22370 8.94808 9.55124 11.04276 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.005602 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.961167 B = 4996.788350 C = 6561.710262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.130 3.870 5 N -0.962 5.962 6 C 0.240 3.760 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.066 3.934 10 N -0.886 5.886 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.284 1.284 15 S 2.691 3.309 16 O -0.957 6.957 17 O -0.897 6.897 18 C -0.452 4.452 19 O -0.107 6.107 20 C -0.006 4.006 21 C -0.185 4.185 22 C -0.133 4.133 23 C 0.516 3.484 24 O -0.462 6.462 25 O -0.351 6.351 26 C 0.035 3.965 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.263 0.737 37 H 0.218 0.782 38 H 0.170 0.830 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 12.892 -0.897 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.036 4.036 4 C 0.003 3.997 5 N -0.803 5.803 6 C 0.119 3.881 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.525 5.525 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.210 1.210 15 S 2.769 3.231 16 O -0.947 6.947 17 O -0.887 6.887 18 C -0.580 4.580 19 O 0.002 5.998 20 C -0.075 4.075 21 C -0.205 4.205 22 C -0.137 4.137 23 C 0.359 3.641 24 O -0.348 6.348 25 O -0.268 6.268 26 C -0.059 4.059 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.234 0.766 38 H 0.187 0.813 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.686 12.762 -1.462 13.124 hybrid contribution 1.744 -0.379 0.314 1.812 sum 4.430 12.383 -1.148 13.202 Atomic orbital electron populations 1.22710 0.82251 1.02512 0.99173 1.88097 1.18541 1.26953 1.95177 1.23092 0.94972 0.85312 1.00201 1.21236 0.91679 0.98163 0.88621 1.57407 1.76165 1.19487 1.27227 1.19471 0.98520 0.70608 0.99475 1.21612 1.02833 0.92340 1.41295 0.92013 1.24910 0.96728 0.96849 0.95247 1.69952 1.34276 1.03135 1.45091 0.86573 0.83842 0.79015 0.78769 1.19802 1.20836 1.21001 1.02953 0.72017 0.73713 0.74382 1.93564 1.71270 1.43095 1.86771 1.93707 1.82178 1.68730 1.44045 1.37301 1.22706 1.10693 0.87274 1.83982 1.19365 1.66538 1.29950 1.24414 0.84229 1.00800 0.98103 1.23002 0.97355 1.06901 0.93213 1.20355 0.94616 1.08327 0.90403 1.20054 0.83615 0.74480 0.85967 1.91095 1.20884 1.42586 1.80264 1.86515 1.38946 1.83010 1.18318 1.23339 1.02361 1.03244 0.76914 0.89798 0.94751 0.94522 0.92742 0.93064 0.88520 0.89781 0.91510 0.93123 0.92725 0.76595 0.81300 0.87931 0.91284 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.72 9.02 -35.23 -0.32 -7.03 16 3 C 0.04 0.69 6.28 37.16 0.23 0.93 16 4 C 0.13 2.26 5.79 -4.04 -0.02 2.24 16 5 N -0.96 -20.58 2.75 -115.66 -0.32 -20.89 16 6 C 0.24 6.14 5.27 -5.19 -0.03 6.11 16 7 C -0.54 -14.57 9.38 -34.44 -0.32 -14.89 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 11 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 S 2.69 58.32 5.29 -107.50 -0.57 57.75 16 16 O -0.96 -20.28 16.99 -57.17 -0.97 -21.25 16 17 O -0.90 -22.29 13.50 -66.97 -0.90 -23.19 16 18 C -0.45 -8.95 7.37 30.10 0.22 -8.73 16 19 O -0.11 -1.86 10.52 7.70 0.08 -1.78 16 20 C -0.01 -0.08 12.03 29.30 0.35 0.27 16 21 C -0.19 -2.63 11.05 -37.44 -0.41 -3.05 16 22 C -0.13 -2.47 6.31 -103.30 -0.65 -3.12 16 23 C 0.52 9.73 7.94 34.39 0.27 10.00 16 24 O -0.46 -9.99 13.12 -27.28 -0.36 -10.35 16 25 O -0.35 -5.30 10.48 -40.68 -0.43 -5.73 16 26 C 0.04 0.39 10.57 101.05 1.07 1.46 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.67 8.11 -51.93 -0.42 1.25 16 33 H 0.08 1.24 7.61 -51.93 -0.40 0.84 16 34 H 0.07 1.78 6.60 -51.93 -0.34 1.44 16 35 H 0.05 1.43 6.91 -51.93 -0.36 1.07 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.22 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -36.06 370.86 -6.04 -42.11 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.29 Total: -0.68 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 1.72 Total: -5.51 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.42 Total: -46.04 kcal Atomic # 8 Polarization: -66.43 SS G_CDS: -2.90 Total: -69.33 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 58.32 SS G_CDS: -0.57 Total: 57.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.06 -6.04 -42.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363936664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.184 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds