Wall clock time and date at job start Wed Apr 1 2020 04:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99905 * 2 1 4 4 C 1.53005 * 109.47088 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47030 * 65.00042 * 4 3 2 6 6 C 1.46498 * 119.99987 * 275.00257 * 5 4 3 7 7 C 1.50707 * 109.46870 * 275.00193 * 6 5 4 8 8 H 1.07995 * 120.00007 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00001 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99853 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00079 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47106 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46945 * 119.99556 * 11 9 7 14 14 H 1.48502 * 109.47125 * 239.99620 * 11 9 7 15 15 S 1.65599 * 119.99923 * 95.00137 * 5 4 3 16 16 O 1.42101 * 106.40096 * 336.45921 * 15 5 4 17 17 O 1.42104 * 106.39941 * 203.53925 * 15 5 4 18 18 C 1.76197 * 107.21957 * 89.99924 * 15 5 4 19 19 O 1.33630 * 125.80658 * 330.26856 * 18 15 5 20 20 C 1.34217 * 110.92458 * 180.16046 * 19 18 15 21 21 C 1.34160 * 109.14291 * 359.60497 * 20 19 18 22 22 C 1.36497 * 125.80963 * 149.99567 * 18 15 5 23 23 C 1.47236 * 127.20106 * 359.97438 * 22 18 15 24 24 O 1.21536 * 119.99760 * 359.97438 * 23 22 18 25 25 O 1.34769 * 119.99754 * 179.97438 * 23 22 18 26 26 C 1.45205 * 116.99561 * 179.97438 * 25 23 22 27 27 H 1.08998 * 109.47392 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47012 * 299.99728 * 1 2 3 29 29 H 1.08998 * 109.47480 * 59.99858 * 1 2 3 30 30 H 1.08999 * 109.47375 * 60.00036 * 3 2 1 31 31 H 1.09005 * 109.47264 * 300.00266 * 3 2 1 32 32 H 1.09001 * 109.46823 * 304.99730 * 4 3 2 33 33 H 1.08998 * 109.46814 * 185.00223 * 4 3 2 34 34 H 1.08994 * 109.47171 * 34.99984 * 6 5 4 35 35 H 1.09003 * 109.47081 * 155.00218 * 6 5 4 36 36 H 0.96997 * 119.99617 * 180.02562 * 10 9 7 37 37 H 1.08002 * 125.43126 * 179.87823 * 20 19 18 38 38 H 1.07999 * 127.02229 * 180.25170 * 21 20 19 39 39 H 1.09005 * 109.46849 * 180.02562 * 26 25 23 40 40 H 1.08996 * 109.47225 * 299.99918 * 26 25 23 41 41 H 1.09002 * 109.46960 * 60.00393 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0003 -0.8950 -1.3782 7 6 5.2993 -1.4246 -0.8275 8 1 6.0332 -0.7423 -0.4248 9 6 5.5513 -2.7801 -0.8388 10 7 4.6577 -3.6109 -1.3297 11 14 7.1617 -3.4365 -0.1569 12 1 7.9901 -2.3051 0.3316 13 1 6.8811 -4.3663 0.9666 14 1 7.8941 -4.1599 -1.2271 15 16 4.4453 1.5131 -2.5263 16 8 3.8177 2.7743 -2.3400 17 8 4.2756 0.7257 -3.6970 18 6 6.1774 1.7898 -2.3596 19 8 6.8548 1.8346 -1.2085 20 6 8.1584 2.0666 -1.4282 21 6 8.3700 2.1725 -2.7487 22 6 7.0565 1.9898 -3.3844 23 6 6.7533 2.0166 -4.8250 24 8 5.6126 1.8480 -5.2090 25 8 7.7406 2.2280 -5.7176 26 6 7.3687 2.2407 -7.1211 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1765 0.0890 34 1 3.1678 -1.3218 -0.8191 35 1 3.9118 -1.1708 -2.4290 36 1 4.8348 -4.5646 -1.3373 37 1 8.9169 2.1501 -0.6639 38 1 9.3125 2.3542 -3.2438 39 1 8.2548 2.4198 -7.7301 40 1 6.9317 1.2791 -7.3900 41 1 6.6405 3.0326 -7.2968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363936664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:35 Heat of formation + Delta-G solvation = -192.487084 kcal Electronic energy + Delta-G solvation = -30298.418875 eV Core-core repulsion = 25886.877145 eV Total energy + Delta-G solvation = -4411.541730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.77305 -41.45109 -39.09313 -38.43628 -37.74668 -37.08936 -36.96497 -34.58481 -34.36107 -31.37272 -31.06719 -28.99208 -28.52417 -26.98138 -25.46858 -24.63144 -23.38834 -23.21781 -22.13604 -20.40588 -19.53398 -18.72309 -18.64453 -18.28357 -17.94461 -17.67186 -17.45013 -17.10448 -17.04897 -16.57618 -16.36285 -16.32348 -15.79172 -15.21644 -14.99276 -14.49728 -14.46982 -14.39075 -14.02010 -13.91847 -13.57038 -13.41450 -13.33612 -13.27017 -13.11785 -12.98491 -12.80192 -12.70561 -12.55876 -12.26534 -12.00996 -11.98395 -11.93174 -11.85151 -11.64321 -11.25297 -10.58189 -10.47607 -10.33832 -9.84159 -8.13624 -6.27086 -0.88871 -0.61235 0.80818 1.27558 1.40399 1.42518 1.43760 1.54593 1.64039 2.25833 2.44559 2.50089 2.99557 3.18686 3.28653 3.41949 3.58105 3.91250 3.96905 4.18799 4.20150 4.25014 4.27363 4.40931 4.49444 4.58594 4.60052 4.61749 4.63825 4.83392 4.90854 5.01900 5.06508 5.11190 5.42147 5.51753 5.57455 5.74155 5.89636 6.13292 6.37831 6.40784 6.85013 7.41730 8.95257 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.005602 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.961167 B = 4996.788350 C = 6561.710262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.040 3.960 4 C 0.118 3.882 5 N -0.966 5.966 6 C 0.261 3.739 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.957 3.043 12 H -0.253 1.253 13 H -0.277 1.277 14 H -0.286 1.286 15 S 2.705 3.295 16 O -0.963 6.963 17 O -0.943 6.943 18 C -0.494 4.494 19 O -0.115 6.115 20 C 0.014 3.986 21 C -0.183 4.183 22 C -0.148 4.148 23 C 0.510 3.490 24 O -0.502 6.502 25 O -0.341 6.341 26 C 0.024 3.976 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.011 0.989 36 H 0.264 0.736 37 H 0.276 0.724 38 H 0.208 0.792 39 H 0.149 0.851 40 H 0.059 0.941 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.584 14.380 0.670 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C -0.038 4.038 4 C -0.007 4.007 5 N -0.807 5.807 6 C 0.138 3.862 7 C -0.585 4.585 8 H 0.090 0.910 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.782 3.218 12 H -0.176 1.176 13 H -0.202 1.202 14 H -0.212 1.212 15 S 2.787 3.213 16 O -0.953 6.953 17 O -0.933 6.933 18 C -0.626 4.626 19 O -0.007 6.007 20 C -0.055 4.055 21 C -0.202 4.202 22 C -0.153 4.153 23 C 0.354 3.646 24 O -0.392 6.392 25 O -0.257 6.257 26 C -0.069 4.069 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.291 0.709 38 H 0.225 0.775 39 H 0.167 0.833 40 H 0.077 0.923 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.730 14.283 0.112 15.389 hybrid contribution 0.878 -0.733 -0.226 1.167 sum 6.608 13.549 -0.115 15.075 Atomic orbital electron populations 1.22897 0.80329 1.03232 1.00751 1.88040 1.20874 1.28329 1.95489 1.23191 0.93975 0.84954 1.01709 1.21610 0.93041 0.99237 0.86801 1.57219 1.77148 1.17693 1.28626 1.18916 0.97730 0.73019 0.96579 1.21922 1.03240 0.92691 1.40622 0.90980 1.25845 1.00382 0.97255 0.95625 1.70099 1.36568 1.03455 1.46642 0.85515 0.79507 0.78813 0.77970 1.17628 1.20210 1.21214 1.02022 0.72551 0.73195 0.73499 1.93536 1.72315 1.42733 1.86684 1.93649 1.83661 1.69719 1.46273 1.36449 1.22209 1.15034 0.88863 1.83960 1.21173 1.66601 1.28989 1.25654 0.83173 0.97250 0.99430 1.23499 0.96805 1.06488 0.93381 1.20809 0.96732 1.07600 0.90171 1.20379 0.83623 0.73698 0.86877 1.91077 1.22578 1.44521 1.80999 1.86509 1.37563 1.82037 1.19628 1.23767 1.04888 1.02991 0.75214 0.89654 0.91896 0.94110 0.88679 0.93880 0.88483 0.86931 0.93355 0.97072 0.92673 0.70889 0.77512 0.83316 0.92253 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -15.12 9.02 -148.98 -1.34 -16.46 16 3 C 0.04 1.27 6.28 71.98 0.45 1.73 16 4 C 0.12 4.11 5.79 86.38 0.50 4.61 16 5 N -0.97 -42.65 2.75 -519.83 -1.43 -44.08 16 6 C 0.26 13.96 5.27 85.64 0.45 14.41 16 7 C -0.55 -29.78 9.38 25.60 0.24 -29.54 16 8 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.01 0.45 5.46 84.65 0.46 0.92 16 10 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 11 Si 0.96 42.89 29.54 68.60 2.03 44.91 16 12 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 15 S 2.70 121.72 5.29 -56.49 -0.30 121.42 16 16 O -0.96 -41.87 16.99 -128.00 -2.17 -44.04 16 17 O -0.94 -50.08 13.50 -118.64 -1.60 -51.68 16 18 C -0.49 -19.49 7.37 67.41 0.50 -18.99 16 19 O -0.12 -3.76 10.52 4.65 0.05 -3.71 16 20 C 0.01 0.31 12.03 66.89 0.80 1.11 16 21 C -0.18 -4.53 11.05 23.65 0.26 -4.27 16 22 C -0.15 -5.40 6.31 -19.00 -0.12 -5.52 16 23 C 0.51 19.39 7.94 70.19 0.56 19.95 16 24 O -0.50 -22.71 13.12 27.36 0.36 -22.36 16 25 O -0.34 -9.90 10.48 -56.80 -0.60 -10.50 16 26 C 0.02 0.51 10.57 113.37 1.20 1.71 16 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.10 3.34 8.11 -2.39 -0.02 3.32 16 33 H 0.11 3.19 7.61 -2.39 -0.02 3.17 16 34 H 0.05 2.73 6.60 -2.39 -0.02 2.72 16 35 H 0.01 0.68 6.91 -2.39 -0.02 0.67 16 36 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.28 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.21 3.35 8.06 -2.91 -0.02 3.32 16 39 H 0.15 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -83.75 370.86 2.88 -80.87 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.06 Total: 13.16 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 6.55 Total: -11.99 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -1.15 Total: -99.62 kcal Atomic # 8 Polarization: -143.44 SS G_CDS: -5.31 Total: -148.75 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 121.72 SS G_CDS: -0.30 Total: 121.42 kcal Total: -83.75 2.88 -80.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363936664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.618 kcal (2) G-P(sol) polarization free energy of solvation -83.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds