Wall clock time and date at job start Wed Apr 1 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81405 * 109.47369 * 2 1 4 4 O 1.42101 * 113.54317 * 179.11407 * 3 2 1 5 5 C 1.81401 * 107.16436 * 305.30910 * 3 2 1 6 6 C 1.53004 * 109.47501 * 295.33905 * 5 3 2 7 7 N 1.49351 * 107.52220 * 60.64789 * 3 2 1 8 8 S 1.65599 * 119.99986 * 65.35459 * 7 3 2 9 9 O 1.42105 * 106.39913 * 61.90602 * 8 7 3 10 10 O 1.42089 * 106.40445 * 288.98392 * 8 7 3 11 11 N 1.65598 * 107.21910 * 175.43990 * 8 7 3 12 12 C 1.38824 * 119.99757 * 62.11675 * 11 8 7 13 13 C 1.39794 * 119.58683 * 352.30946 * 12 11 8 14 14 C 1.38591 * 119.49368 * 180.02562 * 13 12 11 15 15 C 1.38391 * 118.68067 * 0.02562 * 14 13 12 16 16 C 1.40555 * 119.14844 * 359.97438 * 15 14 13 17 17 C 1.41318 * 119.78481 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00054 * 9.35111 * 17 16 15 19 19 C 1.40026 * 119.99880 * 189.35097 * 17 16 15 20 20 N 1.30748 * 119.99512 * 192.61060 * 19 17 16 21 21 Si 1.86803 * 120.00108 * 12.33754 * 19 17 16 22 22 H 1.48498 * 109.46840 * 275.57841 * 21 19 17 23 23 H 1.48495 * 109.47053 * 35.57610 * 21 19 17 24 24 H 1.48497 * 109.47119 * 155.57733 * 21 19 17 25 25 N 1.31959 * 119.58104 * 172.60356 * 12 11 8 26 26 H 1.08997 * 109.46948 * 185.13758 * 1 2 3 27 27 H 1.09006 * 109.46893 * 305.13149 * 1 2 3 28 28 H 1.08999 * 109.47321 * 65.12750 * 1 2 3 29 29 H 1.09004 * 109.47128 * 240.00084 * 2 1 3 30 30 H 1.09000 * 109.47448 * 120.00171 * 2 1 3 31 31 H 1.09002 * 109.47365 * 55.33618 * 5 3 2 32 32 H 1.09003 * 109.46748 * 175.33683 * 5 3 2 33 33 H 1.08996 * 109.46694 * 59.99847 * 6 5 3 34 34 H 1.08996 * 109.47128 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.46576 * 300.00196 * 6 5 3 36 36 H 0.96998 * 120.00054 * 242.12116 * 11 8 7 37 37 H 1.07998 * 120.25441 * 0.04410 * 13 12 11 38 38 H 1.08001 * 120.66141 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.42649 * 180.02562 * 15 14 13 40 40 H 0.97004 * 119.99651 * 179.72494 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 3.5520 1.8112 0.0201 5 6 1.3687 2.5490 -1.4144 6 6 1.8604 1.9091 -2.7143 7 7 1.6264 2.3669 1.2414 8 16 2.1425 1.8440 2.7255 9 8 3.5470 2.0575 2.7600 10 8 1.5444 0.5719 2.9329 11 7 1.4873 2.8591 3.8580 12 6 0.1088 2.9456 3.9978 13 6 -0.7203 2.2994 3.0763 14 6 -2.0962 2.3876 3.2174 15 6 -2.6100 3.1187 4.2741 16 6 -1.7244 3.7458 5.1674 17 6 -2.2345 4.4953 6.2515 18 1 -3.2891 4.4627 6.4817 19 6 -1.3725 5.2803 7.0270 20 7 -1.7845 5.7739 8.1655 21 14 0.3685 5.6158 6.4388 22 1 1.2503 4.4882 6.8339 23 1 0.3735 5.7535 4.9602 24 1 0.8655 6.8723 7.0546 25 7 -0.4023 3.6418 4.9955 26 1 -0.3633 -1.0235 0.0920 27 1 -0.3633 0.5914 0.8405 28 1 -0.3634 0.4322 -0.9323 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.2848 2.4536 -1.3499 32 1 1.6420 3.6041 -1.4027 33 1 1.5871 0.8540 -2.7259 34 1 1.4005 2.4134 -3.5641 35 1 2.9443 2.0044 -2.7788 36 1 2.0666 3.3932 4.4236 37 1 -0.2920 1.7356 2.2608 38 1 -2.7544 1.8961 2.5162 39 1 -3.6778 3.2057 4.4110 40 1 -1.1860 6.3144 8.7046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364954885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:58 Heat of formation + Delta-G solvation = -40.350005 kcal Electronic energy + Delta-G solvation = -27417.366463 eV Core-core repulsion = 23487.467514 eV Total energy + Delta-G solvation = -3929.898949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.85250 -37.13116 -36.72530 -35.75065 -34.83341 -34.39143 -33.79163 -33.25053 -32.57803 -31.13912 -29.14226 -25.66920 -24.93695 -24.22089 -22.10528 -21.70347 -20.21050 -18.69528 -17.90588 -17.58050 -17.14686 -17.13916 -16.85723 -16.19176 -15.62271 -15.09386 -14.97057 -14.69282 -14.37891 -14.05490 -13.96320 -13.58225 -13.31186 -13.25622 -12.73459 -12.68493 -12.62063 -12.52831 -12.26662 -12.11479 -12.00820 -11.87409 -11.71960 -11.53542 -11.41604 -11.33361 -11.04316 -10.81614 -10.70024 -10.30575 -10.26103 -10.16144 -10.00688 -9.22555 -8.53660 -7.77228 -7.39935 -6.93329 -4.70183 -1.06767 0.86260 2.10378 2.48902 2.65035 2.74814 3.15838 3.38589 3.46339 3.53356 3.64609 3.87119 4.03518 4.19370 4.24176 4.40145 4.48379 4.55597 4.73984 4.79962 4.89830 5.00557 5.05601 5.23633 5.29661 5.37758 5.46493 5.57627 5.71446 5.96000 6.27618 6.45692 6.56948 6.79692 7.11957 7.24462 7.48290 7.56165 7.89801 8.12808 8.53301 8.59945 9.51473 9.99690 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.003994 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.643026 B = 7008.627665 C = 7573.070793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.591 4.591 3 S 2.307 3.693 4 O -0.920 6.920 5 C -0.491 4.491 6 C -0.164 4.164 7 N -1.509 6.509 8 S 2.799 3.201 9 O -0.980 6.980 10 O -0.984 6.984 11 N -1.023 6.023 12 C 0.423 3.577 13 C -0.340 4.340 14 C -0.020 4.020 15 C -0.281 4.281 16 C 0.271 3.729 17 C -0.407 4.407 18 H 0.099 0.901 19 C 0.084 3.916 20 N -0.796 5.796 21 Si 0.994 3.006 22 H -0.276 1.276 23 H -0.263 1.263 24 H -0.331 1.331 25 N -0.596 5.596 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.138 0.862 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.421 0.579 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 -8.813 -22.565 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.728 4.728 3 S 2.499 3.501 4 O -0.905 6.905 5 C -0.631 4.631 6 C -0.223 4.223 7 N -1.528 6.528 8 S 2.804 3.196 9 O -0.962 6.962 10 O -0.966 6.966 11 N -0.774 5.774 12 C 0.188 3.812 13 C -0.367 4.367 14 C -0.044 4.044 15 C -0.304 4.304 16 C 0.148 3.852 17 C -0.438 4.438 18 H 0.117 0.883 19 C -0.140 4.140 20 N -0.419 5.419 21 Si 0.829 3.171 22 H -0.203 1.203 23 H -0.189 1.189 24 H -0.264 1.264 25 N -0.322 5.322 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.156 0.844 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.257 0.743 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.733 -8.612 -21.517 23.875 hybrid contribution -0.013 -0.101 -0.343 0.358 sum 5.720 -8.713 -21.860 24.217 Atomic orbital electron populations 1.21703 0.88762 1.06157 1.04087 1.30347 1.09159 1.20277 1.12971 1.11622 0.77344 0.79838 0.81303 1.93681 1.26379 1.84820 1.85572 1.29055 1.13582 1.12613 1.07891 1.21856 1.03386 1.01553 0.95508 1.76370 1.79978 1.67736 1.28736 1.01278 0.71779 0.72879 0.73707 1.93690 1.30357 1.85887 1.86282 1.93646 1.78366 1.39686 1.84950 1.52987 1.13000 1.60345 1.51051 1.17614 0.81306 0.91537 0.90784 1.20766 0.94257 1.16322 1.05325 1.20638 0.93471 0.94596 0.95716 1.21485 0.99114 1.09531 1.00267 1.18252 0.85254 0.90283 0.91440 1.19532 0.97359 1.20011 1.06922 0.88321 1.26421 1.03064 0.91835 0.92638 1.69638 1.39152 1.23772 1.09298 0.84606 0.78702 0.74228 0.79523 1.20283 1.18905 1.26417 1.66164 1.15261 1.27029 1.23776 0.89277 0.88977 0.91136 0.84391 0.83043 0.82773 0.82601 0.90660 0.88334 0.90168 0.74345 0.86526 0.87433 0.87283 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.61 37.16 0.36 -0.70 16 2 C -0.59 -4.62 6.01 37.16 0.22 -4.40 16 3 S 2.31 25.01 3.77 -98.05 -0.37 24.64 16 4 O -0.92 -13.90 16.94 -49.93 -0.85 -14.75 16 5 C -0.49 -2.45 6.39 37.16 0.24 -2.21 16 6 C -0.16 -0.41 9.88 37.16 0.37 -0.05 16 7 N -1.51 -23.59 9.05 60.35 0.55 -23.04 16 8 S 2.80 55.26 5.11 -98.05 -0.50 54.76 16 9 O -0.98 -21.34 17.03 -63.90 -1.09 -22.43 16 10 O -0.98 -19.33 14.57 -57.17 -0.83 -20.16 16 11 N -1.02 -22.51 5.92 31.15 0.18 -22.33 16 12 C 0.42 10.24 7.56 -155.32 -1.17 9.07 16 13 C -0.34 -7.33 8.64 -38.87 -0.34 -7.67 16 14 C -0.02 -0.41 10.15 -39.39 -0.40 -0.81 16 15 C -0.28 -6.50 9.83 -38.65 -0.38 -6.88 16 16 C 0.27 7.16 6.29 -85.00 -0.54 6.63 16 17 C -0.41 -11.18 9.68 -37.74 -0.37 -11.55 16 18 H 0.10 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.08 2.28 5.52 -17.34 -0.10 2.19 16 20 N -0.80 -21.53 13.92 55.55 0.77 -20.76 16 21 Si 0.99 25.04 25.40 -169.99 -4.32 20.73 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.26 -6.81 6.63 56.52 0.37 -6.43 16 24 H -0.33 -8.03 7.11 56.52 0.40 -7.62 16 25 N -0.60 -15.83 4.95 -10.33 -0.05 -15.88 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.91 5.79 -51.93 -0.30 0.61 16 28 H 0.07 0.22 7.18 -51.93 -0.37 -0.15 16 29 H 0.14 0.43 7.82 -51.92 -0.41 0.02 16 30 H 0.15 1.48 6.77 -51.92 -0.35 1.13 16 31 H 0.15 0.40 7.28 -51.92 -0.38 0.02 16 32 H 0.16 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.07 0.02 7.65 -51.93 -0.40 -0.38 16 34 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.42 8.82 8.95 -34.47 -0.31 8.51 16 37 H 0.12 2.14 2.80 -52.49 -0.15 1.99 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.29 7.15 8.29 -40.82 -0.34 6.82 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -38.95 346.31 -8.17 -47.11 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -4.78 Total: 3.28 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -2.10 Total: -16.39 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: 1.45 Total: -82.01 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -2.77 Total: -57.34 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.32 Total: 20.73 kcal Atomic # 16 Polarization: 80.27 SS G_CDS: -0.87 Total: 79.40 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.95 -8.17 -47.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364954885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.762 kcal (2) G-P(sol) polarization free energy of solvation -38.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds