Wall clock time and date at job start Wed Apr 1 2020 04:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81405 * 109.47369 * 2 1 4 4 O 1.42101 * 113.54317 * 179.11407 * 3 2 1 5 5 C 1.81401 * 107.16436 * 305.30910 * 3 2 1 6 6 C 1.53004 * 109.47501 * 295.33905 * 5 3 2 7 7 N 1.49351 * 107.52220 * 60.64789 * 3 2 1 8 8 S 1.65599 * 119.99986 * 65.35459 * 7 3 2 9 9 O 1.42105 * 106.39913 * 61.90602 * 8 7 3 10 10 O 1.42089 * 106.40445 * 288.98392 * 8 7 3 11 11 N 1.65598 * 107.21910 * 175.43990 * 8 7 3 12 12 C 1.38824 * 119.99757 * 62.11675 * 11 8 7 13 13 C 1.39794 * 119.58683 * 352.30946 * 12 11 8 14 14 C 1.38591 * 119.49368 * 180.02562 * 13 12 11 15 15 C 1.38391 * 118.68067 * 0.02562 * 14 13 12 16 16 C 1.40555 * 119.14844 * 359.97438 * 15 14 13 17 17 C 1.41318 * 119.78481 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00054 * 9.35111 * 17 16 15 19 19 C 1.40026 * 119.99880 * 189.35097 * 17 16 15 20 20 N 1.30748 * 119.99512 * 192.61060 * 19 17 16 21 21 Si 1.86803 * 120.00108 * 12.33754 * 19 17 16 22 22 H 1.48498 * 109.46840 * 275.57841 * 21 19 17 23 23 H 1.48495 * 109.47053 * 35.57610 * 21 19 17 24 24 H 1.48497 * 109.47119 * 155.57733 * 21 19 17 25 25 N 1.31959 * 119.58104 * 172.60356 * 12 11 8 26 26 H 1.08997 * 109.46948 * 185.13758 * 1 2 3 27 27 H 1.09006 * 109.46893 * 305.13149 * 1 2 3 28 28 H 1.08999 * 109.47321 * 65.12750 * 1 2 3 29 29 H 1.09004 * 109.47128 * 240.00084 * 2 1 3 30 30 H 1.09000 * 109.47448 * 120.00171 * 2 1 3 31 31 H 1.09002 * 109.47365 * 55.33618 * 5 3 2 32 32 H 1.09003 * 109.46748 * 175.33683 * 5 3 2 33 33 H 1.08996 * 109.46694 * 59.99847 * 6 5 3 34 34 H 1.08996 * 109.47128 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.46576 * 300.00196 * 6 5 3 36 36 H 0.96998 * 120.00054 * 242.12116 * 11 8 7 37 37 H 1.07998 * 120.25441 * 0.04410 * 13 12 11 38 38 H 1.08001 * 120.66141 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.42649 * 180.02562 * 15 14 13 40 40 H 0.97004 * 119.99651 * 179.72494 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 3.5520 1.8112 0.0201 5 6 1.3687 2.5490 -1.4144 6 6 1.8604 1.9091 -2.7143 7 7 1.6264 2.3669 1.2414 8 16 2.1425 1.8440 2.7255 9 8 3.5470 2.0575 2.7600 10 8 1.5444 0.5719 2.9329 11 7 1.4873 2.8591 3.8580 12 6 0.1088 2.9456 3.9978 13 6 -0.7203 2.2994 3.0763 14 6 -2.0962 2.3876 3.2174 15 6 -2.6100 3.1187 4.2741 16 6 -1.7244 3.7458 5.1674 17 6 -2.2345 4.4953 6.2515 18 1 -3.2891 4.4627 6.4817 19 6 -1.3725 5.2803 7.0270 20 7 -1.7845 5.7739 8.1655 21 14 0.3685 5.6158 6.4388 22 1 1.2503 4.4882 6.8339 23 1 0.3735 5.7535 4.9602 24 1 0.8655 6.8723 7.0546 25 7 -0.4023 3.6418 4.9955 26 1 -0.3633 -1.0235 0.0920 27 1 -0.3633 0.5914 0.8405 28 1 -0.3634 0.4322 -0.9323 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.2848 2.4536 -1.3499 32 1 1.6420 3.6041 -1.4027 33 1 1.5871 0.8540 -2.7259 34 1 1.4005 2.4134 -3.5641 35 1 2.9443 2.0044 -2.7788 36 1 2.0666 3.3932 4.4236 37 1 -0.2920 1.7356 2.2608 38 1 -2.7544 1.8961 2.5162 39 1 -3.6778 3.2057 4.4110 40 1 -1.1860 6.3144 8.7046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364954885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:57 Heat of formation + Delta-G solvation = -72.246512 kcal Electronic energy + Delta-G solvation = -27418.749599 eV Core-core repulsion = 23487.467514 eV Total energy + Delta-G solvation = -3931.282085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70149 -38.57201 -37.77288 -37.27169 -36.62189 -35.26989 -34.85464 -34.56719 -33.21664 -32.98624 -31.01538 -27.56006 -25.32933 -24.72566 -23.90946 -23.47104 -21.49450 -20.12455 -19.56820 -19.02930 -18.62344 -18.36310 -17.78458 -17.18854 -16.92172 -16.84380 -16.22793 -15.92576 -15.67623 -15.20659 -15.09308 -14.74651 -14.63547 -14.29204 -14.08143 -13.88943 -13.73126 -13.60583 -13.50280 -13.33923 -13.30115 -13.19133 -13.01083 -12.79968 -12.54772 -12.46636 -12.37332 -12.23340 -12.12035 -12.00120 -11.98033 -11.44423 -11.26211 -11.01720 -10.36841 -9.70482 -9.25308 -8.95727 -6.71311 -1.76037 -0.52307 0.66512 0.89160 1.30232 1.40931 1.48875 1.55523 1.60456 1.74961 2.38712 2.57684 2.63502 3.25037 3.41766 3.58479 3.62891 3.67526 3.76194 3.79500 3.90018 4.14585 4.34667 4.42374 4.56114 4.59506 4.75062 4.78460 4.79252 4.90859 4.92803 5.02224 5.22858 5.25843 5.38037 5.47599 5.67860 5.78826 6.00215 6.14725 6.55148 6.66058 7.59985 8.02749 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.003994 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.643026 B = 7008.627665 C = 7573.070793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.571 4.571 3 S 2.252 3.748 4 O -0.979 6.979 5 C -0.448 4.448 6 C -0.175 4.175 7 N -1.523 6.523 8 S 2.799 3.201 9 O -1.014 7.014 10 O -0.994 6.994 11 N -1.035 6.035 12 C 0.396 3.604 13 C -0.326 4.326 14 C -0.007 4.007 15 C -0.289 4.289 16 C 0.255 3.745 17 C -0.444 4.444 18 H 0.086 0.914 19 C 0.060 3.940 20 N -0.826 5.826 21 Si 1.032 2.968 22 H -0.289 1.289 23 H -0.278 1.278 24 H -0.319 1.319 25 N -0.623 5.623 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.193 0.807 30 H 0.126 0.874 31 H 0.192 0.808 32 H 0.161 0.839 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.071 0.929 36 H 0.419 0.581 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.127 0.873 40 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -10.704 -27.727 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.709 4.709 3 S 2.452 3.548 4 O -0.965 6.965 5 C -0.590 4.590 6 C -0.235 4.235 7 N -1.544 6.544 8 S 2.804 3.196 9 O -0.997 6.997 10 O -0.976 6.976 11 N -0.783 5.783 12 C 0.162 3.838 13 C -0.352 4.352 14 C -0.031 4.031 15 C -0.311 4.311 16 C 0.130 3.870 17 C -0.476 4.476 18 H 0.104 0.896 19 C -0.160 4.160 20 N -0.451 5.451 21 Si 0.868 3.132 22 H -0.216 1.216 23 H -0.205 1.205 24 H -0.252 1.252 25 N -0.350 5.350 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.210 0.790 30 H 0.144 0.856 31 H 0.210 0.790 32 H 0.179 0.821 33 H 0.125 0.875 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.253 0.747 37 H 0.168 0.832 38 H 0.183 0.817 39 H 0.145 0.855 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.217 -10.498 -26.638 28.940 hybrid contribution 0.473 0.245 0.820 0.978 sum 4.689 -10.253 -25.817 28.172 Atomic orbital electron populations 1.21927 0.87399 1.06898 1.05599 1.30171 1.10075 1.16141 1.14554 1.13535 0.76885 0.82026 0.82385 1.93630 1.29898 1.86076 1.86860 1.29030 1.14608 1.11654 1.03743 1.22162 1.03314 1.03821 0.94159 1.76072 1.79412 1.70476 1.28423 1.01104 0.71211 0.72576 0.74704 1.93640 1.32715 1.86275 1.87048 1.93616 1.78188 1.40097 1.85678 1.53200 1.12376 1.60464 1.52245 1.18099 0.82420 0.92119 0.91203 1.21412 0.94808 1.14196 1.04749 1.21238 0.93627 0.92932 0.95321 1.21771 0.99753 1.09304 1.00300 1.18511 0.85923 0.90624 0.91962 1.19544 0.96939 1.22307 1.08816 0.89596 1.26753 1.04381 0.92003 0.92830 1.69633 1.40021 1.25516 1.09930 0.84050 0.76996 0.74006 0.78196 1.21635 1.20483 1.25196 1.66037 1.15751 1.28077 1.25141 0.87986 0.91915 0.86041 0.78970 0.85581 0.79020 0.82105 0.87454 0.85371 0.91012 0.74707 0.83188 0.81685 0.85472 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.61 71.98 0.69 -0.66 16 2 C -0.57 -6.63 6.01 71.98 0.43 -6.19 16 3 S 2.25 43.51 3.77 -37.15 -0.14 43.37 16 4 O -0.98 -29.80 16.94 -134.93 -2.29 -32.09 16 5 C -0.45 -2.05 6.39 71.98 0.46 -1.59 16 6 C -0.18 0.21 9.88 71.98 0.71 0.92 16 7 N -1.52 -45.88 9.05 37.02 0.34 -45.54 16 8 S 2.80 112.40 5.11 -37.15 -0.19 112.21 16 9 O -1.01 -46.45 17.03 -121.57 -2.07 -48.52 16 10 O -0.99 -39.05 14.57 -128.00 -1.86 -40.92 16 11 N -1.03 -46.80 5.92 -55.37 -0.33 -47.13 16 12 C 0.40 19.16 7.56 133.42 1.01 20.17 16 13 C -0.33 -13.27 8.64 22.73 0.20 -13.08 16 14 C -0.01 -0.27 10.15 22.39 0.23 -0.05 16 15 C -0.29 -12.86 9.83 22.87 0.22 -12.64 16 16 C 0.25 13.60 6.29 40.18 0.25 13.86 16 17 C -0.44 -25.26 9.68 23.46 0.23 -25.03 16 18 H 0.09 4.93 8.06 -2.91 -0.02 4.91 16 19 C 0.06 3.40 5.52 85.29 0.47 3.87 16 20 N -0.83 -46.34 13.92 21.84 0.30 -46.04 16 21 Si 1.03 53.53 25.40 68.60 1.74 55.27 16 22 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 23 H -0.28 -14.86 6.63 99.48 0.66 -14.20 16 24 H -0.32 -15.58 7.11 99.48 0.71 -14.88 16 25 N -0.62 -33.68 4.95 -186.58 -0.92 -34.60 16 26 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.93 5.79 -2.38 -0.01 0.92 16 28 H 0.12 -0.24 7.18 -2.39 -0.02 -0.26 16 29 H 0.19 0.05 7.82 -2.39 -0.02 0.03 16 30 H 0.13 2.24 6.77 -2.39 -0.02 2.22 16 31 H 0.19 -0.47 7.28 -2.39 -0.02 -0.49 16 32 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 -0.76 7.65 -2.39 -0.02 -0.78 16 34 H 0.13 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.42 18.59 8.95 -96.75 -0.87 17.72 16 37 H 0.15 5.05 2.80 -2.91 -0.01 5.04 16 38 H 0.17 4.27 8.06 -2.91 -0.02 4.24 16 39 H 0.13 5.12 8.06 -2.91 -0.02 5.10 16 40 H 0.30 15.17 8.29 -92.71 -0.77 14.41 16 Total: -1.00 -93.87 346.31 -0.34 -94.21 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.18 Total: 10.19 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 4.90 Total: -20.41 kcal Atomic # 7 Polarization: -172.70 SS G_CDS: -0.61 Total: -173.31 kcal Atomic # 8 Polarization: -115.31 SS G_CDS: -6.22 Total: -121.53 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 1.74 Total: 55.27 kcal Atomic # 16 Polarization: 155.91 SS G_CDS: -0.33 Total: 155.58 kcal Total: -93.87 -0.34 -94.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364954885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.962 kcal (2) G-P(sol) polarization free energy of solvation -93.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds