Wall clock time and date at job start Wed Apr 1 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35942 * 117.00195 * 2 1 4 4 C 1.38264 * 121.64274 * 180.02562 * 3 2 1 5 5 C 1.35059 * 114.73097 * 180.02562 * 4 3 2 6 6 S 1.76199 * 127.20408 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.40198 * 203.54153 * 6 5 4 8 8 O 1.42096 * 106.39959 * 336.46218 * 6 5 4 9 9 N 1.65599 * 107.21658 * 90.00209 * 6 5 4 10 10 C 1.47083 * 120.87957 * 269.71905 * 9 6 5 11 11 C 1.53699 * 108.27495 * 128.75578 * 10 9 6 12 12 N 1.46904 * 109.25783 * 54.08377 * 11 10 9 13 13 C 1.46891 * 110.99848 * 172.60477 * 12 11 10 14 14 C 1.50705 * 109.47572 * 294.30103 * 13 12 11 15 15 H 1.07997 * 119.99808 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99823 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00024 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99329 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47393 * 60.00411 * 18 16 14 20 20 H 1.48504 * 109.46909 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47416 * 299.99914 * 18 16 14 22 22 C 1.46892 * 111.26793 * 296.75799 * 12 11 10 23 23 C 1.47082 * 120.88437 * 89.99984 * 9 6 5 24 24 S 1.72029 * 105.59356 * 0.24216 * 5 4 3 25 25 N 1.30340 * 121.63878 * 0.03102 * 3 2 1 26 26 H 1.08999 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46786 * 299.99519 * 1 2 3 28 28 H 1.08995 * 109.47316 * 59.99056 * 1 2 3 29 29 H 1.08006 * 122.63357 * 0.02562 * 4 3 2 30 30 H 1.08997 * 109.63211 * 248.52671 * 10 9 6 31 31 H 1.09006 * 109.62825 * 9.10657 * 10 9 6 32 32 H 1.08999 * 109.64758 * 294.08072 * 11 10 9 33 33 H 1.09006 * 109.44062 * 173.96171 * 11 10 9 34 34 H 1.09006 * 109.47234 * 54.30716 * 13 12 11 35 35 H 1.09004 * 109.47152 * 174.30253 * 13 12 11 36 36 H 0.97002 * 119.99248 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.49071 * 303.14309 * 22 12 11 38 38 H 1.08994 * 109.49445 * 183.06620 * 22 12 11 39 39 H 1.09001 * 109.62307 * 350.89699 * 23 9 6 40 40 H 1.08997 * 109.62726 * 111.47389 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 3.4244 1.3231 -0.0005 5 6 3.8883 2.5915 0.0001 6 16 5.5723 3.1100 0.0003 7 8 5.5880 4.4222 0.5454 8 8 6.3234 2.0334 0.5442 9 7 6.0407 3.2551 -1.5814 10 6 6.6313 2.1165 -2.3012 11 6 5.8692 1.9346 -3.6235 12 7 5.8709 3.2043 -4.3624 13 6 5.3068 3.0312 -5.7076 14 6 6.2070 2.1349 -6.5184 15 1 7.1079 1.7336 -6.0783 16 6 5.8805 1.8272 -7.8222 17 7 4.7832 2.3156 -8.3580 18 14 6.9960 0.7157 -8.8268 19 1 7.1046 -0.6079 -8.1623 20 1 6.4258 0.5408 -10.1869 21 1 8.3441 1.3298 -8.9300 22 6 5.1556 4.2524 -3.6224 23 6 5.8828 4.5276 -2.3019 24 16 2.4910 3.5950 0.0084 25 7 1.3680 2.3242 0.0006 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 4.0785 0.4636 -0.0014 30 1 7.6827 2.3182 -2.5058 31 1 6.5396 1.2139 -1.6970 32 1 4.8417 1.6358 -3.4162 33 1 6.3582 1.1652 -4.2212 34 1 4.3176 2.5798 -5.6315 35 1 5.2263 4.0026 -6.1956 36 1 4.5534 2.0987 -9.2751 37 1 4.1380 3.9212 -3.4151 38 1 5.1274 5.1641 -4.2190 39 1 5.2960 5.2198 -1.6980 40 1 6.8636 4.9566 -2.5065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434606640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:55 Heat of formation + Delta-G solvation = -44.329053 kcal Electronic energy + Delta-G solvation = -26721.495704 eV Core-core repulsion = 22791.424211 eV Total energy + Delta-G solvation = -3930.071493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.50200 -38.47288 -37.53078 -37.03495 -36.09627 -34.52355 -32.37756 -31.81880 -30.86662 -28.33389 -27.91722 -25.19004 -24.76066 -23.44232 -21.91286 -21.48255 -20.25029 -19.37245 -18.62243 -18.07081 -17.58182 -16.63095 -16.53783 -16.42127 -15.91053 -15.05455 -14.90971 -14.53574 -14.48584 -14.24765 -14.04397 -13.98336 -13.80788 -13.53035 -12.62997 -12.51627 -12.39289 -12.31862 -12.12059 -12.09843 -11.91367 -11.66259 -11.58745 -11.32789 -11.16835 -11.13361 -10.88867 -10.83927 -10.64824 -10.59496 -10.37200 -9.92442 -9.39510 -8.99350 -8.69716 -8.49808 -7.37690 -6.09358 -4.11435 -0.25914 0.14377 0.84561 1.22560 1.92792 2.67831 2.86129 3.29466 3.34199 3.36571 3.45049 4.16245 4.35956 4.39414 4.63349 4.81146 4.81425 4.91106 4.93452 5.07475 5.25158 5.25472 5.30573 5.39991 5.55441 5.62940 5.68669 5.70929 5.93088 6.07046 6.22155 6.36768 6.41908 6.61502 6.65220 7.17715 7.23337 7.70644 7.97415 8.08048 8.43725 8.95659 9.53403 11.01373 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.003608 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.908897 B = 7758.158396 C = 8983.942326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.291 6.291 3 C 0.293 3.707 4 C -0.060 4.060 5 C -0.768 4.768 6 S 2.717 3.283 7 O -0.943 6.943 8 O -0.940 6.940 9 N -0.986 5.986 10 C 0.122 3.878 11 C 0.049 3.951 12 N -0.532 5.532 13 C 0.194 3.806 14 C -0.511 4.511 15 H 0.064 0.936 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.039 3.961 23 C 0.124 3.876 24 S 0.416 5.584 25 N -0.509 5.509 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.179 0.821 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.024 0.976 33 H 0.099 0.901 34 H -0.010 1.010 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.025 0.975 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 0.085 18.155 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.197 6.197 3 C 0.079 3.921 4 C -0.101 4.101 5 C -0.977 4.977 6 S 2.799 3.201 7 O -0.933 6.933 8 O -0.930 6.930 9 N -0.827 5.827 10 C -0.002 4.002 11 C -0.081 4.081 12 N -0.257 5.257 13 C 0.069 3.931 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.091 4.091 23 C -0.001 4.001 24 S 0.569 5.431 25 N -0.352 5.352 26 H 0.123 0.877 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.196 0.804 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.042 0.958 33 H 0.117 0.883 34 H 0.008 0.992 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.688 1.736 18.674 19.598 hybrid contribution -0.425 -2.581 -1.017 2.807 sum -6.113 -0.845 17.657 18.705 Atomic orbital electron populations 1.23035 0.76388 1.03924 1.02644 1.86303 1.23212 1.22012 1.88200 1.20320 0.90068 0.85233 0.96476 1.20069 0.92850 0.97573 0.99634 1.37354 1.33261 1.07155 1.19940 1.01706 0.71871 0.73660 0.72840 1.93612 1.86039 1.37258 1.76364 1.93597 1.66846 1.56245 1.76304 1.57711 1.74357 1.19771 1.30871 1.21899 0.98704 0.86478 0.93157 1.22436 0.98087 0.94232 0.93296 1.62006 1.54487 1.05157 1.04057 1.19727 0.93423 0.97381 0.82542 1.21104 1.08098 1.29012 0.96731 0.91762 1.24984 0.95338 0.96391 0.97779 1.69945 1.24229 1.44918 1.14644 0.86555 0.80818 0.80931 0.79059 1.20255 1.21404 1.20099 1.22418 0.94803 0.97715 0.94203 1.21717 1.02483 0.82931 0.92931 1.83824 0.85712 1.09397 1.64173 1.76273 1.28134 1.02336 1.28455 0.87711 0.92101 0.91892 0.80356 0.89509 0.89503 0.95803 0.88314 0.99207 0.94989 0.92819 0.95636 0.89795 0.89572 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.47 101.05 1.06 1.35 16 2 O -0.29 -3.36 10.54 -19.56 -0.21 -3.57 16 3 C 0.29 3.68 7.42 -18.17 -0.13 3.55 16 4 C -0.06 -0.71 10.02 -40.70 -0.41 -1.12 16 5 C -0.77 -9.41 6.64 29.60 0.20 -9.21 16 6 S 2.72 34.96 5.86 -107.50 -0.63 34.33 16 7 O -0.94 -13.30 16.75 -57.17 -0.96 -14.26 16 8 O -0.94 -13.56 16.66 -57.17 -0.95 -14.51 16 9 N -0.99 -12.93 3.32 -112.97 -0.38 -13.30 16 10 C 0.12 1.67 6.56 -3.36 -0.02 1.65 16 11 C 0.05 0.85 5.47 -3.46 -0.02 0.83 16 12 N -0.53 -10.35 4.62 -235.47 -1.09 -11.43 16 13 C 0.19 4.74 4.72 -4.98 -0.02 4.72 16 14 C -0.51 -13.55 8.41 -34.44 -0.29 -13.84 16 15 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16 18 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.04 0.62 5.62 -3.70 -0.02 0.59 16 23 C 0.12 1.60 6.53 -3.60 -0.02 1.58 16 24 S 0.42 4.92 23.65 -107.50 -2.54 2.37 16 25 N -0.51 -6.55 11.14 28.91 0.32 -6.23 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.02 7.21 -51.93 -0.37 0.64 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 34 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 35 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 39 H 0.09 0.93 7.22 -51.93 -0.37 0.55 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -32.19 359.65 -10.32 -42.50 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -5.24 Total: -3.62 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 0.22 Total: -8.45 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.40 Total: -56.08 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -2.12 Total: -32.34 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 39.87 SS G_CDS: -3.17 Total: 36.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.19 -10.32 -42.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434606640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.828 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds