Wall clock time and date at job start Wed Apr 1 2020 04:33:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35942 * 117.00195 * 2 1
4 4 C 1.38264 * 121.64274 * 180.02562 * 3 2 1
5 5 C 1.35059 * 114.73097 * 180.02562 * 4 3 2
6 6 S 1.76199 * 127.20408 * 179.97438 * 5 4 3
7 7 O 1.42100 * 106.40198 * 203.54153 * 6 5 4
8 8 O 1.42096 * 106.39959 * 336.46218 * 6 5 4
9 9 N 1.65599 * 107.21658 * 90.00209 * 6 5 4
10 10 C 1.47083 * 120.87957 * 269.71905 * 9 6 5
11 11 C 1.53699 * 108.27495 * 128.75578 * 10 9 6
12 12 N 1.46904 * 109.25783 * 54.08377 * 11 10 9
13 13 C 1.46891 * 110.99848 * 172.60477 * 12 11 10
14 14 C 1.50705 * 109.47572 * 294.30103 * 13 12 11
15 15 H 1.07997 * 119.99808 * 0.02562 * 14 13 12
16 16 C 1.37878 * 119.99823 * 180.02562 * 14 13 12
17 17 N 1.31511 * 120.00024 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 119.99329 * 180.02562 * 16 14 13
19 19 H 1.48503 * 109.47393 * 60.00411 * 18 16 14
20 20 H 1.48504 * 109.46909 * 179.97438 * 18 16 14
21 21 H 1.48493 * 109.47416 * 299.99914 * 18 16 14
22 22 C 1.46892 * 111.26793 * 296.75799 * 12 11 10
23 23 C 1.47082 * 120.88437 * 89.99984 * 9 6 5
24 24 S 1.72029 * 105.59356 * 0.24216 * 5 4 3
25 25 N 1.30340 * 121.63878 * 0.03102 * 3 2 1
26 26 H 1.08999 * 109.47103 * 179.97438 * 1 2 3
27 27 H 1.09002 * 109.46786 * 299.99519 * 1 2 3
28 28 H 1.08995 * 109.47316 * 59.99056 * 1 2 3
29 29 H 1.08006 * 122.63357 * 0.02562 * 4 3 2
30 30 H 1.08997 * 109.63211 * 248.52671 * 10 9 6
31 31 H 1.09006 * 109.62825 * 9.10657 * 10 9 6
32 32 H 1.08999 * 109.64758 * 294.08072 * 11 10 9
33 33 H 1.09006 * 109.44062 * 173.96171 * 11 10 9
34 34 H 1.09006 * 109.47234 * 54.30716 * 13 12 11
35 35 H 1.09004 * 109.47152 * 174.30253 * 13 12 11
36 36 H 0.97002 * 119.99248 * 180.02562 * 17 16 14
37 37 H 1.09002 * 109.49071 * 303.14309 * 22 12 11
38 38 H 1.08994 * 109.49445 * 183.06620 * 22 12 11
39 39 H 1.09001 * 109.62307 * 350.89699 * 23 9 6
40 40 H 1.08997 * 109.62726 * 111.47389 * 23 9 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2112 0.0000
4 6 3.4244 1.3231 -0.0005
5 6 3.8883 2.5915 0.0001
6 16 5.5723 3.1100 0.0003
7 8 5.5880 4.4222 0.5454
8 8 6.3234 2.0334 0.5442
9 7 6.0407 3.2551 -1.5814
10 6 6.6313 2.1165 -2.3012
11 6 5.8692 1.9346 -3.6235
12 7 5.8709 3.2043 -4.3624
13 6 5.3068 3.0312 -5.7076
14 6 6.2070 2.1349 -6.5184
15 1 7.1079 1.7336 -6.0783
16 6 5.8805 1.8272 -7.8222
17 7 4.7832 2.3156 -8.3580
18 14 6.9960 0.7157 -8.8268
19 1 7.1046 -0.6079 -8.1623
20 1 6.4258 0.5408 -10.1869
21 1 8.3441 1.3298 -8.9300
22 6 5.1556 4.2524 -3.6224
23 6 5.8828 4.5276 -2.3019
24 16 2.4910 3.5950 0.0084
25 7 1.3680 2.3242 0.0006
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3633 0.5138 0.8901
28 1 -0.3634 0.5139 -0.8898
29 1 4.0785 0.4636 -0.0014
30 1 7.6827 2.3182 -2.5058
31 1 6.5396 1.2139 -1.6970
32 1 4.8417 1.6358 -3.4162
33 1 6.3582 1.1652 -4.2212
34 1 4.3176 2.5798 -5.6315
35 1 5.2263 4.0026 -6.1956
36 1 4.5534 2.0987 -9.2751
37 1 4.1380 3.9212 -3.4151
38 1 5.1274 5.1641 -4.2190
39 1 5.2960 5.2198 -1.6980
40 1 6.8636 4.9566 -2.5065
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001434606640.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:33:55
Heat of formation + Delta-G solvation = -44.329053 kcal
Electronic energy + Delta-G solvation = -26721.495704 eV
Core-core repulsion = 22791.424211 eV
Total energy + Delta-G solvation = -3930.071493 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 347.081 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.50200 -38.47288 -37.53078 -37.03495 -36.09627 -34.52355 -32.37756 -31.81880
-30.86662 -28.33389 -27.91722 -25.19004 -24.76066 -23.44232 -21.91286 -21.48255
-20.25029 -19.37245 -18.62243 -18.07081 -17.58182 -16.63095 -16.53783 -16.42127
-15.91053 -15.05455 -14.90971 -14.53574 -14.48584 -14.24765 -14.04397 -13.98336
-13.80788 -13.53035 -12.62997 -12.51627 -12.39289 -12.31862 -12.12059 -12.09843
-11.91367 -11.66259 -11.58745 -11.32789 -11.16835 -11.13361 -10.88867 -10.83927
-10.64824 -10.59496 -10.37200 -9.92442 -9.39510 -8.99350 -8.69716 -8.49808
-7.37690 -6.09358 -4.11435 -0.25914 0.14377 0.84561 1.22560 1.92792
2.67831 2.86129 3.29466 3.34199 3.36571 3.45049 4.16245 4.35956
4.39414 4.63349 4.81146 4.81425 4.91106 4.93452 5.07475 5.25158
5.25472 5.30573 5.39991 5.55441 5.62940 5.68669 5.70929 5.93088
6.07046 6.22155 6.36768 6.41908 6.61502 6.65220 7.17715 7.23337
7.70644 7.97415 8.08048 8.43725 8.95659 9.53403 11.01373
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.011592 B = 0.003608 C = 0.003116
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2414.908897 B = 7758.158396 C = 8983.942326
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.291 6.291
3 C 0.293 3.707
4 C -0.060 4.060
5 C -0.768 4.768
6 S 2.717 3.283
7 O -0.943 6.943
8 O -0.940 6.940
9 N -0.986 5.986
10 C 0.122 3.878
11 C 0.049 3.951
12 N -0.532 5.532
13 C 0.194 3.806
14 C -0.511 4.511
15 H 0.064 0.936
16 C 0.057 3.943
17 N -0.898 5.898
18 Si 0.899 3.101
19 H -0.277 1.277
20 H -0.288 1.288
21 H -0.276 1.276
22 C 0.039 3.961
23 C 0.124 3.876
24 S 0.416 5.584
25 N -0.509 5.509
26 H 0.105 0.895
27 H 0.060 0.940
28 H 0.062 0.938
29 H 0.179 0.821
30 H 0.087 0.913
31 H 0.087 0.913
32 H 0.024 0.976
33 H 0.099 0.901
34 H -0.010 1.010
35 H 0.032 0.968
36 H 0.262 0.738
37 H 0.025 0.975
38 H 0.084 0.916
39 H 0.086 0.914
40 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.155 0.085 18.155 18.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.197 6.197
3 C 0.079 3.921
4 C -0.101 4.101
5 C -0.977 4.977
6 S 2.799 3.201
7 O -0.933 6.933
8 O -0.930 6.930
9 N -0.827 5.827
10 C -0.002 4.002
11 C -0.081 4.081
12 N -0.257 5.257
13 C 0.069 3.931
14 C -0.549 4.549
15 H 0.082 0.918
16 C -0.145 4.145
17 N -0.537 5.537
18 Si 0.726 3.274
19 H -0.203 1.203
20 H -0.214 1.214
21 H -0.201 1.201
22 C -0.091 4.091
23 C -0.001 4.001
24 S 0.569 5.431
25 N -0.352 5.352
26 H 0.123 0.877
27 H 0.079 0.921
28 H 0.081 0.919
29 H 0.196 0.804
30 H 0.105 0.895
31 H 0.105 0.895
32 H 0.042 0.958
33 H 0.117 0.883
34 H 0.008 0.992
35 H 0.050 0.950
36 H 0.072 0.928
37 H 0.044 0.956
38 H 0.102 0.898
39 H 0.104 0.896
40 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -5.688 1.736 18.674 19.598
hybrid contribution -0.425 -2.581 -1.017 2.807
sum -6.113 -0.845 17.657 18.705
Atomic orbital electron populations
1.23035 0.76388 1.03924 1.02644 1.86303 1.23212 1.22012 1.88200
1.20320 0.90068 0.85233 0.96476 1.20069 0.92850 0.97573 0.99634
1.37354 1.33261 1.07155 1.19940 1.01706 0.71871 0.73660 0.72840
1.93612 1.86039 1.37258 1.76364 1.93597 1.66846 1.56245 1.76304
1.57711 1.74357 1.19771 1.30871 1.21899 0.98704 0.86478 0.93157
1.22436 0.98087 0.94232 0.93296 1.62006 1.54487 1.05157 1.04057
1.19727 0.93423 0.97381 0.82542 1.21104 1.08098 1.29012 0.96731
0.91762 1.24984 0.95338 0.96391 0.97779 1.69945 1.24229 1.44918
1.14644 0.86555 0.80818 0.80931 0.79059 1.20255 1.21404 1.20099
1.22418 0.94803 0.97715 0.94203 1.21717 1.02483 0.82931 0.92931
1.83824 0.85712 1.09397 1.64173 1.76273 1.28134 1.02336 1.28455
0.87711 0.92101 0.91892 0.80356 0.89509 0.89503 0.95803 0.88314
0.99207 0.94989 0.92819 0.95636 0.89795 0.89572 0.89456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.30 10.47 101.05 1.06 1.35 16
2 O -0.29 -3.36 10.54 -19.56 -0.21 -3.57 16
3 C 0.29 3.68 7.42 -18.17 -0.13 3.55 16
4 C -0.06 -0.71 10.02 -40.70 -0.41 -1.12 16
5 C -0.77 -9.41 6.64 29.60 0.20 -9.21 16
6 S 2.72 34.96 5.86 -107.50 -0.63 34.33 16
7 O -0.94 -13.30 16.75 -57.17 -0.96 -14.26 16
8 O -0.94 -13.56 16.66 -57.17 -0.95 -14.51 16
9 N -0.99 -12.93 3.32 -112.97 -0.38 -13.30 16
10 C 0.12 1.67 6.56 -3.36 -0.02 1.65 16
11 C 0.05 0.85 5.47 -3.46 -0.02 0.83 16
12 N -0.53 -10.35 4.62 -235.47 -1.09 -11.43 16
13 C 0.19 4.74 4.72 -4.98 -0.02 4.72 16
14 C -0.51 -13.55 8.41 -34.44 -0.29 -13.84 16
15 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16
16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16
17 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16
18 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16
19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16
20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16
21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
22 C 0.04 0.62 5.62 -3.70 -0.02 0.59 16
23 C 0.12 1.60 6.53 -3.60 -0.02 1.58 16
24 S 0.42 4.92 23.65 -107.50 -2.54 2.37 16
25 N -0.51 -6.55 11.14 28.91 0.32 -6.23 16
26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16
27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16
30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
31 H 0.09 1.02 7.21 -51.93 -0.37 0.64 16
32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
33 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16
34 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16
35 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16
36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
37 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16
38 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16
39 H 0.09 0.93 7.22 -51.93 -0.37 0.55 16
40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
LS Contribution 359.65 15.07 5.42 5.42
Total: -1.00 -32.19 359.65 -10.32 -42.50
By element:
Atomic # 1 Polarization: 1.62 SS G_CDS: -5.24 Total: -3.62 kcal
Atomic # 6 Polarization: -8.66 SS G_CDS: 0.22 Total: -8.45 kcal
Atomic # 7 Polarization: -55.68 SS G_CDS: -0.40 Total: -56.08 kcal
Atomic # 8 Polarization: -30.22 SS G_CDS: -2.12 Total: -32.34 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal
Atomic # 16 Polarization: 39.87 SS G_CDS: -3.17 Total: 36.70 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -32.19 -10.32 -42.50 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001434606640.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.828 kcal
(2) G-P(sol) polarization free energy of solvation -32.186 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.014 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds