Wall clock time and date at job start Wed Apr 1 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35942 * 117.00195 * 2 1 4 4 C 1.38264 * 121.64274 * 180.02562 * 3 2 1 5 5 C 1.35059 * 114.73097 * 180.02562 * 4 3 2 6 6 S 1.76199 * 127.20408 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.40198 * 203.54153 * 6 5 4 8 8 O 1.42096 * 106.39959 * 336.46218 * 6 5 4 9 9 N 1.65599 * 107.21658 * 90.00209 * 6 5 4 10 10 C 1.47083 * 120.87957 * 269.71905 * 9 6 5 11 11 C 1.53699 * 108.27495 * 128.75578 * 10 9 6 12 12 N 1.46904 * 109.25783 * 54.08377 * 11 10 9 13 13 C 1.46891 * 110.99848 * 172.60477 * 12 11 10 14 14 C 1.50705 * 109.47572 * 294.30103 * 13 12 11 15 15 H 1.07997 * 119.99808 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99823 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00024 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99329 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47393 * 60.00411 * 18 16 14 20 20 H 1.48504 * 109.46909 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47416 * 299.99914 * 18 16 14 22 22 C 1.46892 * 111.26793 * 296.75799 * 12 11 10 23 23 C 1.47082 * 120.88437 * 89.99984 * 9 6 5 24 24 S 1.72029 * 105.59356 * 0.24216 * 5 4 3 25 25 N 1.30340 * 121.63878 * 0.03102 * 3 2 1 26 26 H 1.08999 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46786 * 299.99519 * 1 2 3 28 28 H 1.08995 * 109.47316 * 59.99056 * 1 2 3 29 29 H 1.08006 * 122.63357 * 0.02562 * 4 3 2 30 30 H 1.08997 * 109.63211 * 248.52671 * 10 9 6 31 31 H 1.09006 * 109.62825 * 9.10657 * 10 9 6 32 32 H 1.08999 * 109.64758 * 294.08072 * 11 10 9 33 33 H 1.09006 * 109.44062 * 173.96171 * 11 10 9 34 34 H 1.09006 * 109.47234 * 54.30716 * 13 12 11 35 35 H 1.09004 * 109.47152 * 174.30253 * 13 12 11 36 36 H 0.97002 * 119.99248 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.49071 * 303.14309 * 22 12 11 38 38 H 1.08994 * 109.49445 * 183.06620 * 22 12 11 39 39 H 1.09001 * 109.62307 * 350.89699 * 23 9 6 40 40 H 1.08997 * 109.62726 * 111.47389 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 3.4244 1.3231 -0.0005 5 6 3.8883 2.5915 0.0001 6 16 5.5723 3.1100 0.0003 7 8 5.5880 4.4222 0.5454 8 8 6.3234 2.0334 0.5442 9 7 6.0407 3.2551 -1.5814 10 6 6.6313 2.1165 -2.3012 11 6 5.8692 1.9346 -3.6235 12 7 5.8709 3.2043 -4.3624 13 6 5.3068 3.0312 -5.7076 14 6 6.2070 2.1349 -6.5184 15 1 7.1079 1.7336 -6.0783 16 6 5.8805 1.8272 -7.8222 17 7 4.7832 2.3156 -8.3580 18 14 6.9960 0.7157 -8.8268 19 1 7.1046 -0.6079 -8.1623 20 1 6.4258 0.5408 -10.1869 21 1 8.3441 1.3298 -8.9300 22 6 5.1556 4.2524 -3.6224 23 6 5.8828 4.5276 -2.3019 24 16 2.4910 3.5950 0.0084 25 7 1.3680 2.3242 0.0006 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 4.0785 0.4636 -0.0014 30 1 7.6827 2.3182 -2.5058 31 1 6.5396 1.2139 -1.6970 32 1 4.8417 1.6358 -3.4162 33 1 6.3582 1.1652 -4.2212 34 1 4.3176 2.5798 -5.6315 35 1 5.2263 4.0026 -6.1956 36 1 4.5534 2.0987 -9.2751 37 1 4.1380 3.9212 -3.4151 38 1 5.1274 5.1641 -4.2190 39 1 5.2960 5.2198 -1.6980 40 1 6.8636 4.9566 -2.5065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434606640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:54 Heat of formation + Delta-G solvation = -70.825371 kcal Electronic energy + Delta-G solvation = -26722.644671 eV Core-core repulsion = 22791.424211 eV Total energy + Delta-G solvation = -3931.220460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39097 -39.79658 -38.59704 -37.92957 -37.18137 -36.05532 -34.28140 -32.76931 -32.08672 -29.66460 -29.08485 -26.80357 -25.66288 -24.70326 -23.61460 -22.47514 -21.50570 -20.37505 -19.68721 -18.99627 -18.65221 -18.45522 -17.57721 -17.40354 -16.99707 -16.70669 -15.94974 -15.88379 -15.69981 -15.59049 -15.32892 -15.04125 -14.85358 -14.77922 -14.09436 -13.74094 -13.61113 -13.49172 -13.30753 -13.22509 -13.03239 -12.91886 -12.68739 -12.58640 -12.55078 -12.41587 -12.28563 -12.23010 -12.09986 -12.03974 -11.62554 -11.39530 -11.25506 -10.58567 -10.20903 -9.60563 -8.98896 -8.17865 -6.27381 -1.22726 -0.87457 -0.08701 0.29203 0.98554 1.44924 1.47139 1.54712 1.67004 2.01604 2.42192 2.43858 3.12742 3.15446 3.28580 3.48634 3.59819 3.98329 4.12913 4.18418 4.23516 4.25273 4.28465 4.35444 4.38316 4.50300 4.61682 4.76013 4.80201 4.87203 5.04431 5.06520 5.09296 5.24215 5.29057 5.47083 5.67983 5.80120 6.07509 6.33542 6.64372 6.89178 7.42728 8.92935 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.003608 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.908897 B = 7758.158396 C = 8983.942326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.300 6.300 3 C 0.284 3.716 4 C -0.062 4.062 5 C -0.775 4.775 6 S 2.738 3.262 7 O -0.952 6.952 8 O -0.952 6.952 9 N -0.987 5.987 10 C 0.130 3.870 11 C 0.049 3.951 12 N -0.537 5.537 13 C 0.209 3.791 14 C -0.521 4.521 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.288 1.288 21 H -0.268 1.268 22 C 0.036 3.964 23 C 0.128 3.872 24 S 0.427 5.573 25 N -0.524 5.524 26 H 0.134 0.866 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.197 0.803 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.018 0.982 33 H 0.082 0.918 34 H -0.042 1.042 35 H 0.006 0.994 36 H 0.263 0.737 37 H 0.022 0.978 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 -0.560 19.331 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.206 6.206 3 C 0.070 3.930 4 C -0.104 4.104 5 C -0.984 4.984 6 S 2.821 3.179 7 O -0.943 6.943 8 O -0.942 6.942 9 N -0.827 5.827 10 C 0.005 3.995 11 C -0.081 4.081 12 N -0.262 5.262 13 C 0.083 3.917 14 C -0.559 4.559 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.577 5.577 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.214 1.214 21 H -0.193 1.193 22 C -0.094 4.094 23 C 0.003 3.997 24 S 0.580 5.420 25 N -0.367 5.367 26 H 0.152 0.848 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.214 0.786 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.036 0.964 33 H 0.100 0.900 34 H -0.024 1.024 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.712 1.097 19.882 20.462 hybrid contribution -0.824 -2.366 -1.336 2.840 sum -5.537 -1.269 18.545 19.396 Atomic orbital electron populations 1.23281 0.74916 1.05824 1.02481 1.86300 1.24727 1.21555 1.88009 1.20525 0.90468 0.85536 0.96425 1.20322 0.92984 0.98111 0.98954 1.37259 1.33012 1.07522 1.20651 1.01028 0.71547 0.73042 0.72271 1.93598 1.86303 1.37849 1.76521 1.93579 1.67491 1.56628 1.76534 1.57699 1.74396 1.19680 1.30930 1.21853 0.98436 0.87747 0.91476 1.22452 0.98203 0.92750 0.94667 1.61918 1.54472 1.07028 1.02745 1.19360 0.91806 0.95238 0.85339 1.21466 1.08313 1.28969 0.97173 0.91283 1.25876 0.96700 0.97866 0.99095 1.70082 1.26115 1.46508 1.14986 0.85479 0.78908 0.79259 0.77233 1.19136 1.21398 1.19265 1.22534 0.94862 0.96541 0.95483 1.21763 1.03125 0.83293 0.91481 1.83744 0.85332 1.08937 1.63981 1.76230 1.28833 1.02790 1.28870 0.84846 0.91701 0.92582 0.78615 0.88580 0.87148 0.96407 0.89951 1.02440 0.97540 0.92859 0.95932 0.89665 0.87032 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.47 113.37 1.19 1.65 16 2 O -0.30 -6.58 10.54 -92.90 -0.98 -7.56 16 3 C 0.28 6.86 7.42 84.92 0.63 7.49 16 4 C -0.06 -1.39 10.02 21.54 0.22 -1.18 16 5 C -0.78 -17.73 6.64 67.09 0.45 -17.28 16 6 S 2.74 64.46 5.86 -56.49 -0.33 64.12 16 7 O -0.95 -24.68 16.75 -128.00 -2.14 -26.82 16 8 O -0.95 -25.17 16.66 -128.00 -2.13 -27.30 16 9 N -0.99 -23.73 3.32 -511.32 -1.70 -25.43 16 10 C 0.13 3.28 6.56 86.50 0.57 3.84 16 11 C 0.05 1.66 5.47 86.54 0.47 2.14 16 12 N -0.54 -20.92 4.62 -898.88 -4.15 -25.07 16 13 C 0.21 10.53 4.72 85.56 0.40 10.93 16 14 C -0.52 -27.97 8.41 25.60 0.22 -27.76 16 15 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 16 C 0.00 0.14 5.46 84.66 0.46 0.60 16 17 N -0.94 -55.07 13.29 21.45 0.28 -54.78 16 18 Si 0.97 42.78 29.54 68.60 2.03 44.81 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 C 0.04 1.11 5.62 86.38 0.49 1.60 16 23 C 0.13 3.04 6.53 86.35 0.56 3.60 16 24 S 0.43 9.61 23.65 -56.49 -1.34 8.27 16 25 N -0.52 -13.06 11.14 -176.10 -1.96 -15.02 16 26 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.11 2.30 7.21 -2.38 -0.02 2.28 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 3.04 6.67 -2.38 -0.02 3.03 16 34 H -0.04 -2.35 8.12 -2.38 -0.02 -2.37 16 35 H 0.01 0.35 7.97 -2.39 -0.02 0.34 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 38 H 0.09 2.61 7.99 -2.39 -0.02 2.59 16 39 H 0.11 2.12 7.22 -2.39 -0.02 2.10 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -68.96 359.65 -5.71 -74.67 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.06 Total: 4.49 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 5.65 Total: -14.37 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -7.53 Total: -120.30 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -5.25 Total: -61.69 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 74.06 SS G_CDS: -1.67 Total: 72.39 kcal Total: -68.96 -5.71 -74.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434606640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.846 kcal (2) G-P(sol) polarization free energy of solvation -68.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds