Wall clock time and date at job start Wed Apr 1 2020 04:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34815 * 126.59302 * 2 1 4 4 C 1.36597 * 106.84151 * 180.10794 * 3 2 1 5 5 C 1.47522 * 125.77340 * 179.89643 * 4 3 2 6 6 O 1.21586 * 120.00165 * 359.71952 * 5 4 3 7 7 N 1.34777 * 119.99661 * 179.71922 * 5 4 3 8 8 N 1.40101 * 119.99743 * 179.97438 * 7 5 4 9 9 C 1.34772 * 120.00115 * 179.97438 * 8 7 5 10 10 O 1.21616 * 120.00245 * 0.02562 * 9 8 7 11 11 C 1.47428 * 120.00087 * 180.02562 * 9 8 7 12 12 C 1.39682 * 120.21827 * 0.27732 * 11 9 8 13 13 C 1.37802 * 119.93818 * 180.23559 * 12 11 9 14 14 C 1.38659 * 120.38428 * 359.76163 * 13 12 11 15 15 C 1.37910 * 120.43657 * 359.97438 * 14 13 12 16 16 C 1.39115 * 120.05151 * 359.97438 * 15 14 13 17 17 S 1.76194 * 120.18617 * 180.02562 * 16 15 14 18 18 C 1.76194 * 100.00243 * 353.16114 * 17 16 15 19 19 H 1.07995 * 120.00099 * 354.34284 * 18 17 16 20 20 C 1.38808 * 119.99872 * 174.34821 * 18 17 16 21 21 N 1.31557 * 120.00032 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00267 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47088 * 89.99914 * 22 20 18 24 24 H 1.48499 * 109.47298 * 210.00147 * 22 20 18 25 25 H 1.48497 * 109.47183 * 330.00404 * 22 20 18 26 26 N 1.34406 * 108.45223 * 359.63705 * 4 3 2 27 27 N 1.28760 * 109.52784 * 0.22249 * 26 4 3 28 28 H 1.09009 * 109.47138 * 270.27387 * 1 2 3 29 29 H 1.09004 * 109.47490 * 30.26825 * 1 2 3 30 30 H 1.09004 * 109.47541 * 150.27099 * 1 2 3 31 31 H 1.07999 * 126.58008 * 359.97422 * 3 2 1 32 32 H 0.97002 * 120.00652 * 0.02562 * 7 5 4 33 33 H 0.97003 * 120.00235 * 359.97438 * 8 7 5 34 34 H 1.08003 * 120.02310 * 359.97344 * 12 11 9 35 35 H 1.08006 * 119.80229 * 179.78615 * 13 12 11 36 36 H 1.08000 * 119.78021 * 180.02562 * 14 13 12 37 37 H 1.08002 * 119.97140 * 180.02562 * 15 14 13 38 38 H 0.96995 * 120.00347 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2686 1.0824 0.0000 4 6 3.5542 0.6208 -0.0025 5 6 4.7704 1.4558 -0.0055 6 8 4.6755 2.6680 -0.0112 7 7 5.9866 0.8750 -0.0021 8 7 7.1415 1.6681 -0.0055 9 6 8.3577 1.0873 -0.0015 10 8 8.4527 -0.1251 0.0046 11 6 9.5731 1.9218 -0.0046 12 6 9.4694 3.3148 -0.0058 13 6 10.6092 4.0893 -0.0135 14 6 11.8615 3.4941 -0.0152 15 6 11.9821 2.1202 -0.0086 16 6 10.8435 1.3210 0.0003 17 16 10.9934 -0.4345 0.0095 18 6 12.7352 -0.5940 -0.2032 19 1 13.3396 0.2824 -0.3846 20 6 13.3306 -1.8462 -0.1377 21 7 14.6310 -1.9654 -0.2970 22 14 12.2854 -3.3621 0.1766 23 1 11.8249 -3.9232 -1.1190 24 1 13.0924 -4.3791 0.8976 25 1 11.1079 -2.9893 1.0010 26 7 3.5238 -0.7229 0.0042 27 7 2.3008 -1.1257 0.0059 28 1 -0.3634 0.0049 1.0277 29 1 -0.3634 0.8876 -0.5180 30 1 -0.3634 -0.8924 -0.5096 31 1 1.9560 2.1162 -0.0004 32 1 6.0623 -0.0920 0.0021 33 1 7.0659 2.6351 -0.0108 34 1 8.4967 3.7843 -0.0049 35 1 10.5264 5.1661 -0.0180 36 1 12.7483 4.1104 -0.0209 37 1 12.9613 1.6646 -0.0096 38 1 15.0472 -2.8403 -0.2508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557478807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:47 Heat of formation + Delta-G solvation = 102.109944 kcal Electronic energy + Delta-G solvation = -26104.826589 eV Core-core repulsion = 22077.953967 eV Total energy + Delta-G solvation = -4026.872622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.60615 -40.25230 -39.03423 -37.60127 -35.32569 -35.06064 -32.74427 -32.21094 -31.29582 -30.44085 -29.87782 -28.20903 -25.94202 -24.47526 -23.23296 -22.64455 -22.11017 -21.35662 -20.69476 -18.90559 -17.95523 -17.67798 -17.09018 -16.71126 -16.36456 -15.79020 -15.42090 -15.24544 -15.09833 -14.95156 -14.55862 -14.43048 -14.05523 -13.88716 -13.73772 -13.70028 -13.31548 -12.68329 -12.54557 -12.28128 -11.92878 -11.68193 -11.37121 -11.23131 -11.19520 -10.97629 -10.84343 -10.63174 -10.54553 -10.05427 -9.74582 -9.72771 -9.46064 -8.89040 -8.57268 -8.33910 -8.25503 -6.84440 -6.50276 -4.22295 0.70188 1.24631 1.38663 1.50765 1.87599 1.90279 2.83804 2.90090 3.20514 3.29539 3.36208 3.43397 3.64971 3.84673 4.09283 4.13834 4.31389 4.38653 4.42187 4.55253 4.62514 4.71170 4.92156 4.93010 5.08563 5.21749 5.34547 5.49613 5.78178 5.85409 6.00125 6.19418 6.43668 6.62214 6.64634 6.73902 6.94154 7.02180 7.40268 7.48556 7.65461 7.72648 7.84288 8.31647 8.52642 8.93018 10.56568 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.002707 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.100173 B =10339.832653 C =12459.015662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.364 5.364 3 C 0.100 3.900 4 C -0.094 4.094 5 C 0.605 3.395 6 O -0.544 6.544 7 N -0.499 5.499 8 N -0.528 5.528 9 C 0.558 3.442 10 O -0.508 6.508 11 C -0.167 4.167 12 C -0.063 4.063 13 C -0.175 4.175 14 C -0.072 4.072 15 C -0.143 4.143 16 C -0.027 4.027 17 S 0.092 5.908 18 C -0.579 4.579 19 H 0.107 0.893 20 C 0.104 3.896 21 N -0.861 5.861 22 Si 0.848 3.152 23 H -0.262 1.262 24 H -0.268 1.268 25 H -0.232 1.232 26 N -0.200 5.200 27 N -0.059 5.059 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.209 0.791 32 H 0.440 0.560 33 H 0.428 0.572 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.017 9.628 0.948 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.149 5.149 3 C -0.057 4.057 4 C -0.235 4.235 5 C 0.389 3.611 6 O -0.420 6.420 7 N -0.244 5.244 8 N -0.280 5.280 9 C 0.348 3.652 10 O -0.383 6.383 11 C -0.183 4.183 12 C -0.083 4.083 13 C -0.199 4.199 14 C -0.094 4.094 15 C -0.168 4.168 16 C -0.147 4.147 17 S 0.354 5.646 18 C -0.725 4.725 19 H 0.125 0.875 20 C -0.108 4.108 21 N -0.494 5.494 22 Si 0.671 3.329 23 H -0.187 1.187 24 H -0.193 1.193 25 H -0.156 1.156 26 N -0.074 5.074 27 N -0.040 5.040 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.225 0.775 32 H 0.284 0.716 33 H 0.272 0.728 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.166 0.834 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.537 6.660 1.057 27.381 hybrid contribution 0.514 1.409 -0.047 1.501 sum -26.024 8.069 1.010 27.265 Atomic orbital electron populations 1.22240 0.72227 1.05983 1.04963 1.50424 1.09311 1.05653 1.49466 1.23318 0.89782 0.95146 0.97466 1.21016 0.93757 0.90349 1.18336 1.16607 0.80447 0.86612 0.77438 1.90820 1.86205 1.12640 1.52367 1.44470 0.97455 1.08886 1.73620 1.44921 0.96624 1.07543 1.78921 1.18492 0.81371 0.88349 0.77035 1.90803 1.84995 1.13455 1.49069 1.18745 0.90255 0.92711 1.16594 1.20944 0.98182 0.91904 0.97266 1.20734 0.92360 0.99049 1.07709 1.21177 0.97150 0.94613 0.96472 1.21572 0.99240 0.93251 1.02695 1.22473 0.93670 1.01314 0.97197 1.84087 1.07675 0.94898 1.77954 1.23522 0.93426 0.98876 1.56685 0.87516 1.24811 0.94709 0.98709 0.92544 1.69903 1.09290 1.25467 1.44721 0.86904 0.82102 0.83058 0.80791 1.18712 1.19319 1.15576 1.74724 1.13065 1.10005 1.09610 1.82074 0.93285 1.06266 1.22350 0.89025 0.88219 0.87898 0.77470 0.71585 0.72836 0.86687 0.86494 0.86409 0.83424 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.13 11.51 59.84 0.69 0.81 16 2 N -0.36 -2.49 4.03 -67.85 -0.27 -2.76 16 3 C 0.10 0.73 11.31 -16.83 -0.19 0.54 16 4 C -0.09 -1.04 6.99 -83.55 -0.58 -1.63 16 5 C 0.61 7.84 7.93 -12.48 -0.10 7.74 16 6 O -0.54 -7.65 16.70 5.29 0.09 -7.56 16 7 N -0.50 -7.13 6.26 30.45 0.19 -6.94 16 8 N -0.53 -7.96 6.21 30.43 0.19 -7.77 16 9 C 0.56 10.31 7.87 -12.52 -0.10 10.21 16 10 O -0.51 -10.99 13.61 5.26 0.07 -10.92 16 11 C -0.17 -3.12 5.89 -104.75 -0.62 -3.73 16 12 C -0.06 -0.94 9.53 -39.20 -0.37 -1.31 16 13 C -0.17 -2.53 10.02 -39.59 -0.40 -2.92 16 14 C -0.07 -1.17 10.03 -39.55 -0.40 -1.57 16 15 C -0.14 -2.90 9.22 -39.38 -0.36 -3.26 16 16 C -0.03 -0.59 6.14 -38.39 -0.24 -0.83 16 17 S 0.09 2.30 16.53 -107.50 -1.78 0.52 16 18 C -0.58 -16.02 9.54 30.94 0.30 -15.73 16 19 H 0.11 3.03 5.21 -52.49 -0.27 2.76 16 20 C 0.10 2.91 5.50 -17.46 -0.10 2.81 16 21 N -0.86 -24.87 13.96 55.49 0.77 -24.09 16 22 Si 0.85 20.75 27.74 -169.99 -4.71 16.03 16 23 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.23 -5.65 6.74 56.52 0.38 -5.26 16 26 N -0.20 -2.51 12.04 32.85 0.40 -2.12 16 27 N -0.06 -0.65 13.78 60.35 0.83 0.18 16 28 H 0.09 0.02 8.14 -51.92 -0.42 -0.41 16 29 H 0.10 -0.11 8.14 -51.93 -0.42 -0.53 16 30 H 0.10 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.44 6.48 7.69 -182.59 -1.40 5.08 16 33 H 0.43 5.60 6.03 -182.59 -1.10 4.50 16 34 H 0.12 1.32 6.40 -52.48 -0.34 0.99 16 35 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.15 3.26 5.04 -52.49 -0.26 2.99 16 38 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -35.19 350.58 -6.48 -41.67 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.07 Total: 7.33 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.47 Total: -8.86 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 2.11 Total: -43.49 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.16 Total: -18.48 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.71 Total: 16.03 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.78 Total: 0.52 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.19 -6.48 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557478807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.781 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds