Wall clock time and date at job start Wed Apr 1 2020 04:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34815 * 126.59302 * 2 1 4 4 C 1.36597 * 106.84151 * 180.10794 * 3 2 1 5 5 C 1.47522 * 125.77340 * 179.89643 * 4 3 2 6 6 O 1.21586 * 120.00165 * 359.71952 * 5 4 3 7 7 N 1.34777 * 119.99661 * 179.71922 * 5 4 3 8 8 N 1.40101 * 119.99743 * 179.97438 * 7 5 4 9 9 C 1.34772 * 120.00115 * 179.97438 * 8 7 5 10 10 O 1.21616 * 120.00245 * 0.02562 * 9 8 7 11 11 C 1.47428 * 120.00087 * 180.02562 * 9 8 7 12 12 C 1.39682 * 120.21827 * 0.27732 * 11 9 8 13 13 C 1.37802 * 119.93818 * 180.23559 * 12 11 9 14 14 C 1.38659 * 120.38428 * 359.76163 * 13 12 11 15 15 C 1.37910 * 120.43657 * 359.97438 * 14 13 12 16 16 C 1.39115 * 120.05151 * 359.97438 * 15 14 13 17 17 S 1.76194 * 120.18617 * 180.02562 * 16 15 14 18 18 C 1.76194 * 100.00243 * 353.16114 * 17 16 15 19 19 H 1.07995 * 120.00099 * 354.34284 * 18 17 16 20 20 C 1.38808 * 119.99872 * 174.34821 * 18 17 16 21 21 N 1.31557 * 120.00032 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00267 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47088 * 89.99914 * 22 20 18 24 24 H 1.48499 * 109.47298 * 210.00147 * 22 20 18 25 25 H 1.48497 * 109.47183 * 330.00404 * 22 20 18 26 26 N 1.34406 * 108.45223 * 359.63705 * 4 3 2 27 27 N 1.28760 * 109.52784 * 0.22249 * 26 4 3 28 28 H 1.09009 * 109.47138 * 270.27387 * 1 2 3 29 29 H 1.09004 * 109.47490 * 30.26825 * 1 2 3 30 30 H 1.09004 * 109.47541 * 150.27099 * 1 2 3 31 31 H 1.07999 * 126.58008 * 359.97422 * 3 2 1 32 32 H 0.97002 * 120.00652 * 0.02562 * 7 5 4 33 33 H 0.97003 * 120.00235 * 359.97438 * 8 7 5 34 34 H 1.08003 * 120.02310 * 359.97344 * 12 11 9 35 35 H 1.08006 * 119.80229 * 179.78615 * 13 12 11 36 36 H 1.08000 * 119.78021 * 180.02562 * 14 13 12 37 37 H 1.08002 * 119.97140 * 180.02562 * 15 14 13 38 38 H 0.96995 * 120.00347 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2686 1.0824 0.0000 4 6 3.5542 0.6208 -0.0025 5 6 4.7704 1.4558 -0.0055 6 8 4.6755 2.6680 -0.0112 7 7 5.9866 0.8750 -0.0021 8 7 7.1415 1.6681 -0.0055 9 6 8.3577 1.0873 -0.0015 10 8 8.4527 -0.1251 0.0046 11 6 9.5731 1.9218 -0.0046 12 6 9.4694 3.3148 -0.0058 13 6 10.6092 4.0893 -0.0135 14 6 11.8615 3.4941 -0.0152 15 6 11.9821 2.1202 -0.0086 16 6 10.8435 1.3210 0.0003 17 16 10.9934 -0.4345 0.0095 18 6 12.7352 -0.5940 -0.2032 19 1 13.3396 0.2824 -0.3846 20 6 13.3306 -1.8462 -0.1377 21 7 14.6310 -1.9654 -0.2970 22 14 12.2854 -3.3621 0.1766 23 1 11.8249 -3.9232 -1.1190 24 1 13.0924 -4.3791 0.8976 25 1 11.1079 -2.9893 1.0010 26 7 3.5238 -0.7229 0.0042 27 7 2.3008 -1.1257 0.0059 28 1 -0.3634 0.0049 1.0277 29 1 -0.3634 0.8876 -0.5180 30 1 -0.3634 -0.8924 -0.5096 31 1 1.9560 2.1162 -0.0004 32 1 6.0623 -0.0920 0.0021 33 1 7.0659 2.6351 -0.0108 34 1 8.4967 3.7843 -0.0049 35 1 10.5264 5.1661 -0.0180 36 1 12.7483 4.1104 -0.0209 37 1 12.9613 1.6646 -0.0096 38 1 15.0472 -2.8403 -0.2508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557478807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:46 Heat of formation + Delta-G solvation = 74.237084 kcal Electronic energy + Delta-G solvation = -26106.035247 eV Core-core repulsion = 22077.953967 eV Total energy + Delta-G solvation = -4028.081280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.29849 -41.54087 -40.26402 -39.02234 -36.54442 -35.66041 -34.81687 -33.44684 -32.21623 -31.89264 -31.03302 -28.65830 -27.98987 -25.57389 -24.42020 -23.52765 -23.22842 -22.53488 -21.88129 -20.24221 -19.32972 -18.96504 -18.33842 -17.54156 -17.37000 -17.23432 -16.80900 -16.53605 -16.39966 -15.70985 -15.68479 -15.61121 -15.50163 -15.38073 -15.06613 -14.35024 -14.15619 -13.98756 -13.75475 -13.67069 -13.17588 -13.13523 -13.07650 -12.54292 -12.51516 -12.31902 -12.27002 -11.80932 -11.56875 -11.48708 -11.37063 -11.30674 -10.60194 -10.47646 -10.17636 -9.98816 -9.49861 -8.68171 -8.58929 -6.30749 -0.14396 0.11275 0.44835 0.46558 0.58223 1.00515 1.22594 1.24623 1.40814 1.61011 1.75018 2.09137 2.15528 2.60271 2.77228 2.78395 2.93280 3.10677 3.41376 3.72703 3.89430 3.90324 3.92384 4.22817 4.39966 4.42367 4.52617 4.57822 4.70034 4.73297 4.74271 5.02106 5.28070 5.41202 5.42201 5.45756 5.60124 5.63026 5.67191 6.02826 6.17246 6.36662 6.64931 6.84345 6.85573 7.21725 8.51637 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.002707 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.100173 B =10339.832653 C =12459.015662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.349 5.349 3 C 0.127 3.873 4 C -0.124 4.124 5 C 0.613 3.387 6 O -0.553 6.553 7 N -0.509 5.509 8 N -0.510 5.510 9 C 0.556 3.444 10 O -0.544 6.544 11 C -0.165 4.165 12 C -0.054 4.054 13 C -0.144 4.144 14 C -0.064 4.064 15 C -0.167 4.167 16 C -0.048 4.048 17 S 0.027 5.973 18 C -0.583 4.583 19 H 0.083 0.917 20 C 0.055 3.945 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.262 1.262 24 H -0.253 1.253 25 H -0.236 1.236 26 N -0.233 5.233 27 N -0.091 5.091 28 H 0.110 0.890 29 H 0.135 0.865 30 H 0.107 0.893 31 H 0.250 0.750 32 H 0.437 0.563 33 H 0.440 0.560 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.112 13.592 1.155 33.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.133 5.133 3 C -0.033 4.033 4 C -0.266 4.266 5 C 0.399 3.601 6 O -0.429 6.429 7 N -0.255 5.255 8 N -0.261 5.261 9 C 0.346 3.654 10 O -0.422 6.422 11 C -0.180 4.180 12 C -0.073 4.073 13 C -0.166 4.166 14 C -0.085 4.085 15 C -0.191 4.191 16 C -0.166 4.166 17 S 0.283 5.717 18 C -0.730 4.730 19 H 0.101 0.899 20 C -0.152 4.152 21 N -0.541 5.541 22 Si 0.723 3.277 23 H -0.186 1.186 24 H -0.177 1.177 25 H -0.159 1.159 26 N -0.107 5.107 27 N -0.071 5.071 28 H 0.128 0.872 29 H 0.153 0.847 30 H 0.125 0.875 31 H 0.266 0.734 32 H 0.280 0.720 33 H 0.286 0.714 34 H 0.179 0.821 35 H 0.189 0.811 36 H 0.169 0.831 37 H 0.135 0.865 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -30.716 10.724 1.267 32.558 hybrid contribution 1.432 0.669 -0.123 1.586 sum -29.283 11.392 1.143 31.442 Atomic orbital electron populations 1.22787 0.68964 1.08000 1.06789 1.50800 1.10910 1.04498 1.47101 1.23894 0.88272 0.96614 0.94485 1.21017 0.94331 0.90122 1.21102 1.16850 0.80313 0.86689 0.76248 1.90799 1.86365 1.12955 1.52826 1.44692 0.97411 1.08755 1.74604 1.44585 0.96335 1.08031 1.77175 1.18526 0.82350 0.87857 0.76716 1.90792 1.85528 1.15128 1.50772 1.19027 0.89081 0.94594 1.15282 1.21481 1.00910 0.89914 0.95038 1.21389 0.90716 1.01648 1.02893 1.21590 0.99812 0.92775 0.94311 1.21471 0.97570 0.95300 1.04798 1.22456 0.95657 0.98940 0.99549 1.84009 1.05569 0.99442 1.82680 1.23627 0.94815 0.98261 1.56248 0.89881 1.25555 0.95704 1.01248 0.92696 1.69977 1.10599 1.26264 1.47277 0.86093 0.80703 0.80212 0.80677 1.18630 1.17652 1.15936 1.74700 1.14217 1.11065 1.10704 1.81982 0.93388 1.08117 1.23655 0.87217 0.84702 0.87458 0.73440 0.72036 0.71423 0.82060 0.81107 0.83128 0.86541 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.06 11.51 127.77 1.47 1.41 16 2 N -0.35 -3.82 4.03 -368.58 -1.49 -5.31 16 3 C 0.13 1.44 11.31 83.85 0.95 2.39 16 4 C -0.12 -2.58 6.99 40.82 0.29 -2.29 16 5 C 0.61 14.87 7.93 86.69 0.69 15.56 16 6 O -0.55 -13.90 16.70 -3.99 -0.07 -13.97 16 7 N -0.51 -14.17 6.26 -175.83 -1.10 -15.27 16 8 N -0.51 -14.48 6.21 -175.88 -1.09 -15.57 16 9 C 0.56 20.33 7.87 86.66 0.68 21.01 16 10 O -0.54 -24.36 13.61 -4.08 -0.06 -24.42 16 11 C -0.17 -5.96 5.89 -19.95 -0.12 -6.07 16 12 C -0.05 -1.35 9.53 22.52 0.21 -1.14 16 13 C -0.14 -3.32 10.02 22.27 0.22 -3.09 16 14 C -0.06 -1.88 10.03 22.29 0.22 -1.66 16 15 C -0.17 -6.86 9.22 22.40 0.21 -6.66 16 16 C -0.05 -2.16 6.14 23.04 0.14 -2.02 16 17 S 0.03 1.41 16.53 -56.49 -0.93 0.48 16 18 C -0.58 -34.66 9.54 67.96 0.65 -34.01 16 19 H 0.08 5.16 5.21 -2.91 -0.02 5.14 16 20 C 0.05 3.25 5.50 84.87 0.47 3.72 16 21 N -0.91 -55.33 13.96 21.65 0.30 -55.03 16 22 Si 0.90 45.28 27.74 68.60 1.90 47.19 16 23 H -0.26 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.25 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.24 -11.85 6.74 99.48 0.67 -11.18 16 26 N -0.23 -5.83 12.04 -49.99 -0.60 -6.43 16 27 N -0.09 -1.92 13.78 37.02 0.51 -1.41 16 28 H 0.11 -0.39 8.14 -2.38 -0.02 -0.40 16 29 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.11 -0.10 8.14 -2.38 -0.02 -0.12 16 31 H 0.25 0.55 8.06 -2.91 -0.02 0.53 16 32 H 0.44 13.14 7.69 -213.32 -1.64 11.50 16 33 H 0.44 9.97 6.03 -213.32 -1.29 8.68 16 34 H 0.16 2.64 6.40 -2.91 -0.02 2.62 16 35 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.12 5.54 5.04 -2.91 -0.01 5.53 16 38 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -85.56 350.58 1.67 -83.89 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -1.79 Total: 18.72 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 6.08 Total: -12.85 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -3.47 Total: -99.02 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.12 Total: -38.39 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -0.93 Total: 0.48 kcal Total: -85.56 1.67 -83.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557478807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.122 kcal (2) G-P(sol) polarization free energy of solvation -85.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds