Wall clock time and date at job start Wed Apr 1 2020 04:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46977 * 2 1 4 4 C 1.34211 * 125.71279 * 125.00053 * 3 2 1 5 5 C 1.38497 * 107.34598 * 180.02562 * 4 3 2 6 6 C 1.47099 * 126.46780 * 179.97438 * 5 4 3 7 7 O 1.21557 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.48485 * 119.99583 * 179.97438 * 6 5 4 9 9 O 1.21541 * 120.00038 * 354.17654 * 8 6 5 10 10 N 1.34782 * 119.99441 * 174.17048 * 8 6 5 11 11 C 1.36011 * 120.00074 * 4.59241 * 10 8 6 12 12 H 1.07993 * 119.99960 * 319.65018 * 11 10 8 13 13 C 1.39668 * 119.99836 * 139.65608 * 11 10 8 14 14 N 1.30943 * 119.99850 * 2.84557 * 13 11 10 15 15 Si 1.86794 * 120.00007 * 182.84827 * 13 11 10 16 16 H 1.48494 * 109.47240 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47018 * 119.99964 * 15 13 11 18 18 H 1.48499 * 109.47414 * 239.99973 * 15 13 11 19 19 C 1.39684 * 119.99602 * 184.59253 * 10 8 6 20 20 C 1.38990 * 120.06909 * 112.66545 * 19 10 8 21 21 C 1.38050 * 119.93166 * 180.27409 * 20 19 10 22 22 C 1.38429 * 120.07126 * 359.51447 * 21 20 19 23 23 Cl 1.73596 * 119.93585 * 180.21203 * 22 21 20 24 24 C 1.38435 * 120.13111 * 0.46415 * 22 21 20 25 25 C 1.38059 * 120.06547 * 359.78848 * 24 22 21 26 26 C 1.41489 * 107.05830 * 0.22783 * 5 4 3 27 27 N 1.30378 * 108.00997 * 359.61427 * 26 5 4 28 28 H 1.09005 * 109.47421 * 59.99732 * 1 2 3 29 29 H 1.09000 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46912 * 300.00043 * 1 2 3 31 31 H 1.08998 * 109.46670 * 240.00027 * 2 1 3 32 32 H 1.08992 * 109.46860 * 120.00139 * 2 1 3 33 33 H 1.08004 * 126.33212 * 0.02562 * 4 3 2 34 34 H 0.96998 * 119.99641 * 184.99979 * 14 13 11 35 35 H 1.08001 * 120.03138 * 359.97438 * 20 19 10 36 36 H 1.08007 * 119.96759 * 179.74242 * 21 20 19 37 37 H 1.07997 * 119.96810 * 179.77078 * 24 22 21 38 38 H 1.08004 * 120.03252 * 179.97438 * 25 24 22 39 39 H 1.08001 * 125.98906 * 179.73554 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8688 1.9115 0.8926 5 6 3.0704 3.2344 0.5355 6 6 3.9288 4.2064 1.2299 7 8 4.5466 3.8720 2.2220 8 6 4.0406 5.5961 0.7190 9 8 3.5089 5.9025 -0.3301 10 7 4.7318 6.5177 1.4187 11 6 5.4044 6.1538 2.5435 12 1 4.9605 5.4535 3.2354 13 6 6.6692 6.6861 2.8037 14 7 7.1837 7.5773 1.9939 15 14 7.6268 6.1265 4.3067 16 1 6.8313 5.1196 5.0539 17 1 8.9129 5.5208 3.8770 18 1 7.8980 7.2938 5.1837 19 6 4.7571 7.8464 0.9887 20 6 4.1366 8.8347 1.7438 21 6 4.1586 10.1462 1.3133 22 6 4.8063 10.4790 0.1361 23 17 4.8364 12.1301 -0.3992 24 6 5.4256 9.4970 -0.6180 25 6 5.4026 8.1829 -0.1953 26 6 2.2903 3.4759 -0.6199 27 7 1.6758 2.3686 -0.9301 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.3137 1.4011 1.7340 34 1 8.0901 7.8932 2.1334 35 1 3.6337 8.5761 2.6639 36 1 3.6730 10.9140 1.8975 37 1 5.9270 9.7591 -1.5379 38 1 5.8856 7.4172 -0.7842 39 1 2.2182 4.4127 -1.1526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611174561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:56 Heat of formation + Delta-G solvation = 50.257724 kcal Electronic energy + Delta-G solvation = -27383.704473 eV Core-core repulsion = 23320.246912 eV Total energy + Delta-G solvation = -4063.457560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08478 -39.76825 -38.15831 -36.90346 -35.88713 -34.91699 -34.38376 -31.89218 -30.36949 -30.25839 -29.59133 -28.93031 -25.54137 -24.77419 -23.61274 -22.21251 -21.94694 -20.56708 -20.26691 -19.08339 -18.15534 -16.90549 -16.36080 -15.90585 -15.59496 -15.28552 -14.98919 -14.70623 -14.44419 -14.28579 -13.93417 -13.82580 -13.48301 -13.22280 -12.79342 -12.69676 -12.64405 -12.50623 -12.32458 -12.15443 -11.88368 -11.62345 -11.50803 -11.30226 -11.15754 -10.96047 -10.73440 -10.59632 -10.41704 -10.19964 -9.89419 -9.36007 -9.33093 -8.41479 -8.38103 -8.18356 -8.06064 -7.53081 -6.46466 -4.22087 1.44675 2.00762 2.20478 2.26907 2.47288 2.75561 3.04353 3.17402 3.21282 3.26686 3.85179 4.15008 4.32445 4.42290 4.54218 4.71979 4.85515 4.95299 4.95786 5.20881 5.32423 5.48632 5.53976 5.59901 5.60784 5.68595 5.81381 5.90243 6.16391 6.24395 6.25614 6.40044 6.73396 6.82966 6.88878 6.97277 7.00791 7.33076 7.38283 7.46610 7.78372 7.85566 7.96422 8.47115 8.83881 9.11014 9.55461 10.46832 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.003398 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.982547 B = 8237.165857 C =10272.724127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 N -0.368 5.368 4 C 0.113 3.887 5 C -0.295 4.295 6 C 0.416 3.584 7 O -0.427 6.427 8 C 0.430 3.570 9 O -0.577 6.577 10 N -0.365 5.365 11 C -0.341 4.341 12 H 0.123 0.877 13 C 0.051 3.949 14 N -0.844 5.844 15 Si 0.926 3.074 16 H -0.262 1.262 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.222 3.778 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.055 4.055 23 Cl -0.103 7.103 24 C -0.108 4.108 25 C -0.057 4.057 26 C 0.113 3.887 27 N -0.315 5.315 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.184 0.816 34 H 0.276 0.724 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 -7.256 -1.308 10.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.148 5.148 4 C -0.038 4.038 5 C -0.308 4.308 6 C 0.290 3.710 7 O -0.300 6.300 8 C 0.221 3.779 9 O -0.463 6.463 10 N -0.081 5.081 11 C -0.468 4.468 12 H 0.140 0.860 13 C -0.159 4.159 14 N -0.478 5.478 15 Si 0.752 3.248 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.206 1.206 19 C 0.131 3.869 20 C -0.134 4.134 21 C -0.128 4.128 22 C -0.081 4.081 23 Cl -0.074 7.074 24 C -0.127 4.127 25 C -0.077 4.077 26 C -0.075 4.075 27 N -0.134 5.134 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.201 0.799 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.429 -7.730 -2.132 10.931 hybrid contribution 1.457 0.351 1.331 2.004 sum -5.972 -7.379 -0.802 9.527 Atomic orbital electron populations 1.22052 0.93686 1.02719 1.03824 1.21722 0.96220 0.77503 1.03850 1.48602 1.34733 1.10494 1.20930 1.23138 0.92138 0.93951 0.94529 1.20773 1.11302 0.94817 1.03891 1.21065 0.79112 0.87662 0.83150 1.90559 1.36981 1.80333 1.22116 1.20285 0.85824 0.86595 0.85235 1.90564 1.52442 1.80338 1.22923 1.41041 1.41280 1.03197 1.22576 1.20311 0.98676 1.27979 0.99825 0.85976 1.25703 0.97102 0.94437 0.98633 1.69648 1.15823 1.25576 1.36754 0.85857 0.79452 0.78796 0.80734 1.18576 1.20361 1.20561 1.17618 0.92318 0.84983 0.92025 1.20895 1.00509 0.91700 1.00259 1.20574 1.00727 0.96178 0.95292 1.20620 1.05831 0.83871 0.97782 1.98293 1.97862 1.20855 1.90401 1.20633 1.00546 0.91885 0.99672 1.20770 0.96012 0.94805 0.96075 1.24777 0.91416 0.97063 0.94206 1.77126 1.25207 0.97392 1.13719 0.90913 0.90793 0.92002 0.89625 0.88608 0.79916 0.91286 0.85943 0.86134 0.86172 0.86276 0.77503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.09 37.16 0.37 -0.89 16 2 C 0.13 1.06 7.21 -4.04 -0.03 1.03 16 3 N -0.37 -4.86 3.65 -60.69 -0.22 -5.09 16 4 C 0.11 1.62 11.27 -16.42 -0.18 1.44 16 5 C -0.29 -5.28 6.12 -104.97 -0.64 -5.92 16 6 C 0.42 8.77 7.08 -31.77 -0.22 8.55 16 7 O -0.43 -9.50 13.93 5.32 0.07 -9.43 16 8 C 0.43 10.03 7.52 -12.03 -0.09 9.94 16 9 O -0.58 -13.60 13.83 5.33 0.07 -13.52 16 10 N -0.37 -8.89 2.61 -59.80 -0.16 -9.04 16 11 C -0.34 -8.47 7.83 -15.17 -0.12 -8.59 16 12 H 0.12 3.06 5.72 -52.49 -0.30 2.76 16 13 C 0.05 1.25 5.41 -17.40 -0.09 1.16 16 14 N -0.84 -21.21 10.98 55.53 0.61 -20.60 16 15 Si 0.93 19.49 29.56 -169.99 -5.03 14.46 16 16 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 C 0.22 5.16 2.98 -83.72 -0.25 4.91 16 20 C -0.11 -2.42 9.80 -39.37 -0.39 -2.80 16 21 C -0.11 -2.06 9.82 -39.58 -0.39 -2.45 16 22 C -0.05 -1.03 6.32 -39.44 -0.25 -1.28 16 23 Cl -0.10 -1.66 28.95 -51.86 -1.50 -3.16 16 24 C -0.11 -2.12 9.82 -39.57 -0.39 -2.51 16 25 C -0.06 -1.27 8.37 -39.37 -0.33 -1.60 16 26 C 0.11 1.97 11.12 -16.93 -0.19 1.78 16 27 N -0.31 -5.04 12.32 30.89 0.38 -4.66 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.54 8.06 -51.93 -0.42 0.12 16 33 H 0.18 2.06 8.06 -52.48 -0.42 1.64 16 34 H 0.28 6.64 8.31 -40.82 -0.34 6.31 16 35 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 36 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 37 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.12 2.74 8.06 -52.48 -0.42 2.31 16 39 H 0.21 3.72 6.27 -52.49 -0.33 3.39 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -29.01 359.12 -7.53 -36.54 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -3.99 Total: 6.31 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -3.19 Total: 2.76 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.61 Total: -39.39 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.15 Total: -22.95 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -1.50 Total: -3.16 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.01 -7.53 -36.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611174561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.800 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds