Wall clock time and date at job start Wed Apr 1 2020 04:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46977 * 2 1 4 4 C 1.34211 * 125.71279 * 125.00053 * 3 2 1 5 5 C 1.38497 * 107.34598 * 180.02562 * 4 3 2 6 6 C 1.47099 * 126.46780 * 179.97438 * 5 4 3 7 7 O 1.21557 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.48485 * 119.99583 * 179.97438 * 6 5 4 9 9 O 1.21541 * 120.00038 * 354.17654 * 8 6 5 10 10 N 1.34782 * 119.99441 * 174.17048 * 8 6 5 11 11 C 1.36011 * 120.00074 * 4.59241 * 10 8 6 12 12 H 1.07993 * 119.99960 * 319.65018 * 11 10 8 13 13 C 1.39668 * 119.99836 * 139.65608 * 11 10 8 14 14 N 1.30943 * 119.99850 * 2.84557 * 13 11 10 15 15 Si 1.86794 * 120.00007 * 182.84827 * 13 11 10 16 16 H 1.48494 * 109.47240 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47018 * 119.99964 * 15 13 11 18 18 H 1.48499 * 109.47414 * 239.99973 * 15 13 11 19 19 C 1.39684 * 119.99602 * 184.59253 * 10 8 6 20 20 C 1.38990 * 120.06909 * 112.66545 * 19 10 8 21 21 C 1.38050 * 119.93166 * 180.27409 * 20 19 10 22 22 C 1.38429 * 120.07126 * 359.51447 * 21 20 19 23 23 Cl 1.73596 * 119.93585 * 180.21203 * 22 21 20 24 24 C 1.38435 * 120.13111 * 0.46415 * 22 21 20 25 25 C 1.38059 * 120.06547 * 359.78848 * 24 22 21 26 26 C 1.41489 * 107.05830 * 0.22783 * 5 4 3 27 27 N 1.30378 * 108.00997 * 359.61427 * 26 5 4 28 28 H 1.09005 * 109.47421 * 59.99732 * 1 2 3 29 29 H 1.09000 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46912 * 300.00043 * 1 2 3 31 31 H 1.08998 * 109.46670 * 240.00027 * 2 1 3 32 32 H 1.08992 * 109.46860 * 120.00139 * 2 1 3 33 33 H 1.08004 * 126.33212 * 0.02562 * 4 3 2 34 34 H 0.96998 * 119.99641 * 184.99979 * 14 13 11 35 35 H 1.08001 * 120.03138 * 359.97438 * 20 19 10 36 36 H 1.08007 * 119.96759 * 179.74242 * 21 20 19 37 37 H 1.07997 * 119.96810 * 179.77078 * 24 22 21 38 38 H 1.08004 * 120.03252 * 179.97438 * 25 24 22 39 39 H 1.08001 * 125.98906 * 179.73554 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8688 1.9115 0.8926 5 6 3.0704 3.2344 0.5355 6 6 3.9288 4.2064 1.2299 7 8 4.5466 3.8720 2.2220 8 6 4.0406 5.5961 0.7190 9 8 3.5089 5.9025 -0.3301 10 7 4.7318 6.5177 1.4187 11 6 5.4044 6.1538 2.5435 12 1 4.9605 5.4535 3.2354 13 6 6.6692 6.6861 2.8037 14 7 7.1837 7.5773 1.9939 15 14 7.6268 6.1265 4.3067 16 1 6.8313 5.1196 5.0539 17 1 8.9129 5.5208 3.8770 18 1 7.8980 7.2938 5.1837 19 6 4.7571 7.8464 0.9887 20 6 4.1366 8.8347 1.7438 21 6 4.1586 10.1462 1.3133 22 6 4.8063 10.4790 0.1361 23 17 4.8364 12.1301 -0.3992 24 6 5.4256 9.4970 -0.6180 25 6 5.4026 8.1829 -0.1953 26 6 2.2903 3.4759 -0.6199 27 7 1.6758 2.3686 -0.9301 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.3137 1.4011 1.7340 34 1 8.0901 7.8932 2.1334 35 1 3.6337 8.5761 2.6639 36 1 3.6730 10.9140 1.8975 37 1 5.9270 9.7591 -1.5379 38 1 5.8856 7.4172 -0.7842 39 1 2.2182 4.4127 -1.1526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611174561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:55 Heat of formation + Delta-G solvation = 35.321160 kcal Electronic energy + Delta-G solvation = -27384.352171 eV Core-core repulsion = 23320.246912 eV Total energy + Delta-G solvation = -4064.105258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.36144 -41.43428 -39.75807 -38.58018 -37.42144 -36.54443 -35.35589 -33.71671 -31.86283 -31.53268 -30.78622 -30.53968 -27.23829 -26.33001 -24.64079 -23.73197 -23.53044 -21.98467 -21.50822 -20.73992 -19.71995 -18.25670 -17.89184 -17.56788 -17.05327 -16.56339 -16.56116 -16.27215 -15.99240 -15.72238 -15.32113 -15.20297 -14.93914 -14.61769 -14.32758 -14.18585 -14.00495 -13.80153 -13.62128 -13.34641 -13.26207 -12.96159 -12.94378 -12.83414 -12.51263 -12.36815 -12.18042 -12.11867 -11.91203 -11.68431 -11.50100 -11.13671 -10.52653 -10.14987 -9.82204 -9.75781 -9.67278 -9.22667 -8.26386 -6.10794 -0.03785 0.44133 0.58578 0.91179 1.26632 1.41369 1.45719 1.47134 1.58713 1.68698 2.19521 2.49389 2.65236 2.86008 3.15035 3.51229 3.83312 3.87882 4.02106 4.07902 4.09163 4.17268 4.24041 4.39606 4.51713 4.52424 4.66351 4.76228 4.80077 4.86000 4.92463 5.12404 5.22077 5.25284 5.39192 5.46598 5.52500 5.71414 5.81642 5.93929 6.08257 6.22892 6.54991 6.72662 6.99583 7.31183 7.74839 8.64349 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.003398 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.982547 B = 8237.165857 C =10272.724127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.114 3.886 3 N -0.354 5.354 4 C 0.142 3.858 5 C -0.331 4.331 6 C 0.421 3.579 7 O -0.446 6.446 8 C 0.417 3.583 9 O -0.588 6.588 10 N -0.378 5.378 11 C -0.355 4.355 12 H 0.116 0.884 13 C 0.015 3.985 14 N -0.867 5.867 15 Si 0.984 3.016 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.275 1.275 19 C 0.196 3.804 20 C -0.129 4.129 21 C -0.101 4.101 22 C -0.055 4.055 23 Cl -0.071 7.071 24 C -0.105 4.105 25 C -0.077 4.077 26 C 0.103 3.897 27 N -0.324 5.324 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.220 0.780 34 H 0.275 0.725 35 H 0.124 0.876 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.099 0.901 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -8.403 -0.643 11.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.132 5.132 4 C -0.012 4.012 5 C -0.345 4.345 6 C 0.297 3.703 7 O -0.321 6.321 8 C 0.207 3.793 9 O -0.475 6.475 10 N -0.093 5.093 11 C -0.482 4.482 12 H 0.133 0.867 13 C -0.192 4.192 14 N -0.501 5.501 15 Si 0.807 3.193 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.200 1.200 19 C 0.105 3.895 20 C -0.149 4.149 21 C -0.120 4.120 22 C -0.082 4.082 23 Cl -0.043 7.043 24 C -0.125 4.125 25 C -0.097 4.097 26 C -0.084 4.084 27 N -0.144 5.144 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.152 0.848 33 H 0.237 0.763 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.117 0.883 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.943 -8.882 -1.495 12.008 hybrid contribution 1.465 0.646 0.999 1.887 sum -6.477 -8.236 -0.496 10.490 Atomic orbital electron populations 1.22035 0.93155 1.04361 1.02325 1.22321 0.96706 0.74837 1.06573 1.49081 1.33250 1.11573 1.19307 1.23571 0.90608 0.92474 0.94528 1.20599 1.12785 0.96080 1.05006 1.21068 0.79133 0.87121 0.82961 1.90528 1.38321 1.80264 1.22951 1.20934 0.85287 0.87775 0.85264 1.90533 1.52630 1.80917 1.23383 1.41219 1.41484 1.03943 1.22677 1.20340 0.99357 1.28389 1.00154 0.86699 1.26383 0.97561 0.94422 1.00849 1.69766 1.15856 1.26418 1.38100 0.85002 0.77974 0.78397 0.77908 1.18451 1.20345 1.20015 1.17897 0.93558 0.85072 0.92924 1.21047 1.00974 0.92487 1.00405 1.20879 0.99863 0.95853 0.95360 1.20716 1.04771 0.85310 0.97420 1.98303 1.97710 1.18169 1.90078 1.20845 1.00156 0.91037 1.00413 1.20705 0.97081 0.95644 0.96248 1.24547 0.92107 0.97291 0.94426 1.77075 1.25140 0.97541 1.14682 0.93025 0.87589 0.92859 0.88070 0.84752 0.76326 0.91433 0.85794 0.83100 0.84002 0.88307 0.79052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.09 71.98 0.73 -1.29 16 2 C 0.11 1.47 7.21 86.38 0.62 2.09 16 3 N -0.35 -8.53 3.65 -345.94 -1.26 -9.79 16 4 C 0.14 3.75 11.27 84.39 0.95 4.70 16 5 C -0.33 -11.96 6.12 -20.09 -0.12 -12.08 16 6 C 0.42 18.36 7.08 27.33 0.19 18.55 16 7 O -0.45 -20.25 13.93 -3.90 -0.05 -20.31 16 8 C 0.42 20.45 7.52 86.98 0.65 21.11 16 9 O -0.59 -29.34 13.83 -3.85 -0.05 -29.39 16 10 N -0.38 -19.21 2.61 -461.40 -1.21 -20.42 16 11 C -0.36 -18.28 7.83 84.39 0.66 -17.62 16 12 H 0.12 5.96 5.72 -2.91 -0.02 5.94 16 13 C 0.01 0.74 5.41 85.17 0.46 1.20 16 14 N -0.87 -44.66 10.98 21.78 0.24 -44.42 16 15 Si 0.98 40.42 29.56 68.60 2.03 42.44 16 16 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 17 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 C 0.20 9.49 2.98 38.25 0.11 9.60 16 20 C -0.13 -5.61 9.80 22.41 0.22 -5.39 16 21 C -0.10 -3.73 9.82 22.27 0.22 -3.51 16 22 C -0.06 -2.03 6.32 22.36 0.14 -1.89 16 23 Cl -0.07 -2.14 28.95 -2.72 -0.08 -2.22 16 24 C -0.11 -4.15 9.82 22.27 0.22 -3.93 16 25 C -0.08 -3.57 8.37 22.41 0.19 -3.38 16 26 C 0.10 3.70 11.12 85.71 0.95 4.66 16 27 N -0.32 -10.21 12.32 -56.17 -0.69 -10.90 16 28 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 32 H 0.13 0.80 8.06 -2.39 -0.02 0.78 16 33 H 0.22 4.12 8.06 -2.91 -0.02 4.09 16 34 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 35 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 36 H 0.15 4.58 8.06 -2.91 -0.02 4.55 16 37 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 38 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.19 7.34 6.27 -2.91 -0.02 7.32 16 Total: -1.00 -65.51 359.12 6.22 -59.29 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 1.10 Total: 22.88 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 6.20 Total: 12.83 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.92 Total: -85.53 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -0.11 Total: -49.70 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.08 Total: -2.22 kcal Total: -65.51 6.22 -59.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611174561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.611 kcal (2) G-P(sol) polarization free energy of solvation -65.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds