Wall clock time and date at job start Wed Apr 1 2020 04:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47056 * 2 1 4 4 C 1.46506 * 120.00126 * 270.00078 * 3 2 1 5 5 C 1.50704 * 109.46887 * 270.00187 * 4 3 2 6 6 H 1.07994 * 120.00266 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99719 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00063 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00128 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47195 * 59.99780 * 9 7 5 11 11 H 1.48497 * 109.47426 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47306 * 300.00080 * 9 7 5 13 13 C 1.34780 * 120.00347 * 90.00226 * 3 2 1 14 14 O 1.21280 * 120.00375 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99766 * 0.02562 * 13 3 2 16 16 O 1.45196 * 109.47411 * 180.02562 * 15 13 3 17 17 C 1.34839 * 117.00510 * 180.02562 * 16 15 13 18 18 O 1.21575 * 119.99712 * 359.97438 * 17 16 15 19 19 C 1.46835 * 120.00654 * 180.02562 * 17 16 15 20 20 C 1.33768 * 124.66862 * 180.02562 * 19 17 16 21 21 C 1.40375 * 115.56360 * 180.02562 * 20 19 17 22 22 C 1.41593 * 128.83792 * 179.97438 * 21 20 19 23 23 C 1.35915 * 120.48900 * 180.02562 * 22 21 20 24 24 C 1.38976 * 120.69860 * 359.97438 * 23 22 21 25 25 C 1.37390 * 120.19186 * 0.02562 * 24 23 22 26 26 C 1.39904 * 120.18434 * 359.97438 * 25 24 23 27 27 S 1.75481 * 124.66084 * 0.02562 * 19 17 16 28 28 H 1.09001 * 109.47005 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47006 * 299.99947 * 1 2 3 30 30 H 1.08998 * 109.46988 * 59.99752 * 1 2 3 31 31 H 1.08997 * 109.47006 * 240.00053 * 2 1 3 32 32 H 1.09005 * 109.47539 * 119.99872 * 2 1 3 33 33 H 1.08998 * 109.47107 * 30.00071 * 4 3 2 34 34 H 1.09000 * 109.46924 * 150.00030 * 4 3 2 35 35 H 0.96995 * 120.00221 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.47338 * 59.99492 * 15 13 3 37 37 H 1.09005 * 109.46766 * 299.99924 * 15 13 3 38 38 H 1.07997 * 122.21526 * 359.97438 * 20 19 17 39 39 H 1.07993 * 119.75044 * 0.31789 * 22 21 20 40 40 H 1.07999 * 119.64743 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.90274 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.91147 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1266 -3.6176 9 14 5.9137 2.0976 -3.4164 10 1 6.1416 0.6410 -3.5944 11 1 6.1612 2.7975 -4.7025 12 1 6.8409 2.6208 -2.3811 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9924 1.3060 2.4723 16 8 2.3063 2.1958 3.5759 17 6 2.1354 1.7096 4.8220 18 8 1.7346 0.5730 4.9813 19 6 2.4325 2.5532 5.9865 20 6 2.2973 2.1671 7.2601 21 6 2.6355 3.1299 8.2240 22 6 2.5984 3.0244 9.6355 23 6 2.9668 4.0747 10.4155 24 6 3.3867 5.2699 9.8440 25 6 3.4336 5.4034 8.4774 26 6 3.0595 4.3367 7.6532 27 16 3.0135 4.2067 5.8988 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1384 35 1 3.6755 3.5177 -4.4431 36 1 2.6230 0.4187 2.5298 37 1 0.9445 1.0115 2.5302 38 1 1.9503 1.1804 7.5288 39 1 2.2795 2.1009 10.0957 40 1 2.9329 3.9795 11.4908 41 1 3.6761 6.0965 10.4760 42 1 3.7602 6.3344 8.0382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050800076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:37 Heat of formation + Delta-G solvation = -87.270456 kcal Electronic energy + Delta-G solvation = -26513.133106 eV Core-core repulsion = 22549.295926 eV Total energy + Delta-G solvation = -3963.837180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87457 -40.80549 -40.44001 -37.85126 -37.02743 -36.30587 -34.95452 -32.03522 -31.82101 -31.31333 -30.35538 -28.47180 -26.08920 -24.87396 -24.42026 -24.07222 -22.76552 -21.19217 -20.29642 -19.90343 -18.67685 -18.52635 -18.11852 -17.91220 -17.51037 -17.06839 -16.69900 -16.35355 -16.19187 -15.99397 -15.37003 -15.02197 -14.87386 -14.69100 -14.63555 -14.53167 -14.13006 -13.97497 -13.77299 -13.63125 -13.30328 -13.11236 -12.80251 -12.67532 -12.54240 -12.35575 -12.31593 -12.25955 -12.10846 -12.05347 -11.85677 -11.75843 -11.65220 -10.81966 -10.78693 -10.65631 -9.69656 -9.57677 -8.88737 -8.24523 -6.39029 -0.95030 0.24667 0.25187 0.69084 0.78589 1.05179 1.35864 1.40275 1.47173 1.55097 1.59956 2.25774 2.40842 2.70632 3.05414 3.35337 3.40125 3.66246 3.80648 3.90279 3.91144 3.98932 4.12510 4.29127 4.36101 4.36321 4.56794 4.57535 4.61322 4.69166 4.84647 4.92784 4.97865 5.01212 5.02903 5.18129 5.21228 5.34741 5.37918 5.48945 5.51929 5.77342 5.88464 6.02391 6.29125 6.57623 6.69522 7.17722 7.34156 8.82808 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.002260 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.723112 B =12387.694047 C =13527.691919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.062 3.938 16 O -0.345 6.345 17 C 0.540 3.460 18 O -0.509 6.509 19 C -0.247 4.247 20 C -0.006 4.006 21 C -0.117 4.117 22 C -0.062 4.062 23 C -0.122 4.122 24 C -0.073 4.073 25 C -0.108 4.108 26 C -0.139 4.139 27 S 0.131 5.869 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.031 0.969 34 H -0.001 1.001 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.174 0.826 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.806 -3.069 30.009 30.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.143 3.857 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.014 4.014 16 O -0.261 6.261 17 C 0.385 3.615 18 O -0.399 6.399 19 C -0.363 4.363 20 C -0.039 4.039 21 C -0.125 4.125 22 C -0.082 4.082 23 C -0.142 4.142 24 C -0.094 4.094 25 C -0.131 4.131 26 C -0.256 4.256 27 S 0.400 5.600 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.017 0.983 35 H 0.077 0.923 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.191 0.809 39 H 0.175 0.825 40 H 0.183 0.817 41 H 0.183 0.817 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.412 -1.789 28.473 28.732 hybrid contribution 0.427 -0.795 -0.220 0.928 sum -2.986 -2.583 28.252 28.527 Atomic orbital electron populations 1.22180 0.94273 1.03852 1.01844 1.21889 0.95605 0.80885 1.04507 1.48205 1.63523 1.15297 1.05573 1.18797 0.95642 0.91632 0.79677 1.21664 0.97789 1.32308 1.06650 0.92763 1.25855 1.02428 0.94425 0.96403 1.70038 1.37799 1.33969 1.14817 0.85471 0.78944 0.79087 0.77339 1.18354 1.20261 1.20471 1.20477 0.78466 0.86654 0.85787 1.90689 1.47066 1.20178 1.87712 1.22941 1.05130 0.91905 0.81419 1.86635 1.79193 1.45496 1.14763 1.19995 0.74084 0.85029 0.82368 1.90844 1.43628 1.18794 1.86660 1.22467 1.18430 1.00521 0.94882 1.20507 0.93402 1.01131 0.88902 1.18381 1.05850 0.92414 0.95825 1.21227 0.96671 1.00932 0.89329 1.21213 0.98509 0.92450 1.02014 1.21655 0.95328 0.98987 0.93455 1.20848 1.01215 0.97101 0.93939 1.23454 1.05586 0.99509 0.97017 1.85014 1.67304 1.07056 1.00626 0.88273 0.92469 0.93659 0.89862 0.88341 0.95098 0.98305 0.92325 0.85960 0.85543 0.80878 0.82532 0.81682 0.81670 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.24 71.98 0.74 -3.31 16 2 C 0.09 2.82 5.93 86.38 0.51 3.33 16 3 N -0.59 -25.56 2.46 -826.14 -2.03 -27.59 16 4 C 0.26 14.32 5.16 85.63 0.44 14.76 16 5 C -0.55 -31.71 9.39 25.60 0.24 -31.47 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 9 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 C 0.50 21.99 7.75 87.66 0.68 22.67 16 14 O -0.58 -31.82 16.08 15.77 0.25 -31.56 16 15 C 0.06 2.05 4.51 71.24 0.32 2.37 16 16 O -0.35 -12.42 9.57 -51.13 -0.49 -12.91 16 17 C 0.54 16.86 7.93 70.07 0.56 17.42 16 18 O -0.51 -15.92 16.51 19.59 0.32 -15.59 16 19 C -0.25 -6.69 6.32 23.50 0.15 -6.55 16 20 C -0.01 -0.13 9.79 21.77 0.21 0.08 16 21 C -0.12 -2.17 5.87 -21.49 -0.13 -2.30 16 22 C -0.06 -0.70 10.03 22.56 0.23 -0.47 16 23 C -0.12 -0.97 9.94 21.91 0.22 -0.75 16 24 C -0.07 -0.66 10.03 22.25 0.22 -0.44 16 25 C -0.11 -1.62 10.07 22.47 0.23 -1.39 16 26 C -0.14 -2.87 6.50 23.12 0.15 -2.72 16 27 S 0.13 3.49 23.05 -56.49 -1.30 2.19 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 32 H 0.10 2.34 6.44 -2.38 -0.02 2.32 16 33 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 34 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.12 3.41 7.40 -2.38 -0.02 3.39 16 37 H 0.13 3.38 7.18 -2.38 -0.02 3.37 16 38 H 0.17 2.93 7.96 -2.91 -0.02 2.90 16 39 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 41 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 42 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -80.99 381.13 5.35 -75.65 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.05 Total: 6.39 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 5.23 Total: 12.17 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.74 Total: -83.69 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: 0.09 Total: -60.06 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.30 Total: 2.19 kcal Total: -80.99 5.35 -75.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050800076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.625 kcal (2) G-P(sol) polarization free energy of solvation -80.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds