Wall clock time and date at job start Wed Apr 1 2020 04:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 117.00145 * 2 1 4 4 C 1.38755 * 120.05443 * 5.06160 * 3 2 1 5 5 C 1.38122 * 119.93924 * 180.31685 * 4 3 2 6 6 C 1.38287 * 120.06210 * 359.68302 * 5 4 3 7 7 C 1.38243 * 120.10745 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.05677 * 0.02562 * 7 6 5 9 9 S 1.76198 * 120.02528 * 179.97438 * 8 7 6 10 10 O 1.42093 * 106.40704 * 2.79529 * 9 8 7 11 11 O 1.42108 * 106.40316 * 229.87082 * 9 8 7 12 12 N 1.65607 * 107.21563 * 116.33551 * 9 8 7 13 13 C 1.36939 * 120.00089 * 97.48671 * 12 9 8 14 14 H 1.08000 * 120.00103 * 3.17055 * 13 12 9 15 15 C 1.38806 * 119.99783 * 183.17342 * 13 12 9 16 16 N 1.31621 * 120.00150 * 5.21489 * 15 13 12 17 17 Si 1.86801 * 120.00030 * 185.20961 * 15 13 12 18 18 H 1.48499 * 109.46992 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47164 * 119.99909 * 17 15 13 20 20 H 1.48493 * 109.47511 * 240.00160 * 17 15 13 21 21 C 1.46495 * 119.99684 * 277.48429 * 12 9 8 22 22 C 1.50701 * 109.47319 * 5.05225 * 21 12 9 23 23 C 1.38229 * 119.99997 * 82.99747 * 22 21 12 24 24 C 1.38241 * 120.00062 * 179.97438 * 23 22 21 25 25 C 1.38242 * 119.99767 * 0.07260 * 24 23 22 26 26 C 1.38237 * 119.99862 * 359.90612 * 25 24 23 27 27 C 1.38230 * 119.99964 * 0.04603 * 26 25 24 28 28 H 1.08999 * 109.47242 * 184.39126 * 1 2 3 29 29 H 1.09000 * 109.46935 * 304.39644 * 1 2 3 30 30 H 1.09003 * 109.46850 * 64.39597 * 1 2 3 31 31 H 1.08003 * 120.02824 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.96906 * 179.69925 * 5 4 3 33 33 H 1.07995 * 119.94605 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.97669 * 180.02562 * 7 6 5 35 35 H 0.97003 * 119.99814 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.46998 * 245.04792 * 21 12 9 37 37 H 1.09004 * 109.46901 * 125.05140 * 21 12 9 38 38 H 1.07997 * 120.00242 * 359.70007 * 23 22 21 39 39 H 1.07991 * 119.99978 * 179.97438 * 24 23 22 40 40 H 1.07998 * 119.99885 * 179.97438 * 25 24 23 41 41 H 1.07996 * 119.99914 * 180.02562 * 26 25 24 42 42 H 1.08003 * 119.99769 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2956 2.3732 0.1060 5 6 1.9246 3.6029 0.0991 6 6 3.3015 3.6761 -0.0066 7 6 4.0518 2.5193 -0.1062 8 6 3.4273 1.2867 -0.1009 9 16 4.3844 -0.1871 -0.2286 10 8 5.7458 0.2193 -0.2545 11 8 3.7862 -0.9664 -1.2555 12 7 4.1752 -1.0311 1.1808 13 6 3.2608 -2.0487 1.2402 14 1 2.7129 -2.3348 0.3545 15 6 3.0381 -2.7125 2.4387 16 7 3.6283 -2.2985 3.5399 17 14 1.9006 -4.1935 2.4889 18 1 1.3669 -4.4539 1.1278 19 1 2.6560 -5.3822 2.9596 20 1 0.7752 -3.9220 3.4188 21 6 4.9683 -0.6890 2.3640 22 6 5.8010 0.5333 2.0745 23 6 5.2455 1.7930 2.1975 24 6 6.0094 2.9142 1.9324 25 6 7.3285 2.7755 1.5428 26 6 7.8841 1.5156 1.4202 27 6 7.1204 0.3946 1.6862 28 1 -0.3634 -1.0246 0.0787 29 1 -0.3633 0.5805 0.8480 30 1 -0.3633 0.4441 -0.9268 31 1 0.2203 2.3166 0.1890 32 1 1.3406 4.5080 0.1767 33 1 3.7914 4.6385 -0.0113 34 1 5.1270 2.5789 -0.1883 35 1 3.4723 -2.7622 4.3776 36 1 5.6229 -1.5232 2.6162 37 1 4.3015 -0.4843 3.2016 38 1 4.2134 1.9012 2.4965 39 1 5.5753 3.8984 2.0281 40 1 7.9253 3.6514 1.3353 41 1 8.9148 1.4072 1.1162 42 1 7.5544 -0.5897 1.5900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053669815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:53 Heat of formation + Delta-G solvation = -30.640585 kcal Electronic energy + Delta-G solvation = -30600.208852 eV Core-core repulsion = 26638.827327 eV Total energy + Delta-G solvation = -3961.381525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.07033 -40.27573 -38.33212 -37.61595 -37.32296 -36.41058 -33.48277 -32.43616 -31.77166 -31.50597 -30.85459 -28.14781 -27.51029 -25.28777 -24.12754 -23.23109 -23.03264 -22.07089 -20.28487 -19.56725 -18.98406 -18.37110 -17.73254 -17.20611 -16.95617 -16.64542 -16.12689 -16.05753 -15.95488 -15.64142 -15.56045 -15.35596 -15.03898 -14.56705 -14.20144 -14.08169 -13.94472 -13.66488 -13.51557 -13.22491 -12.94059 -12.80241 -12.71521 -12.64816 -12.56063 -12.46024 -12.37120 -12.09354 -11.95810 -11.78557 -11.74882 -11.55175 -11.32828 -10.92661 -10.29669 -9.94468 -9.42526 -9.25314 -9.13866 -7.95612 -5.68614 -0.11799 0.11954 0.45746 0.70665 0.82137 1.44990 1.48635 1.60686 2.31811 2.40771 2.59758 2.79468 3.06389 3.20794 3.38650 3.76177 3.94267 4.01365 4.16821 4.20847 4.23196 4.36305 4.37162 4.39357 4.44778 4.50541 4.70524 4.72046 4.83101 4.85772 4.90360 5.09444 5.18777 5.25463 5.33158 5.38105 5.45090 5.47978 5.61228 5.77777 5.83281 5.88145 5.89289 6.07567 6.39813 6.40986 6.66147 7.07263 7.47194 8.92363 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.007190 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.529841 B = 3893.231399 C = 5449.841875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.201 3.799 4 C -0.242 4.242 5 C -0.028 4.028 6 C -0.184 4.184 7 C 0.011 3.989 8 C -0.729 4.729 9 S 2.644 3.356 10 O -0.977 6.977 11 O -1.018 7.018 12 N -0.846 5.846 13 C -0.285 4.285 14 H 0.098 0.902 15 C -0.010 4.010 16 N -0.909 5.909 17 Si 0.974 3.026 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.208 3.792 22 C -0.139 4.139 23 C -0.116 4.116 24 C -0.127 4.127 25 C -0.116 4.116 26 C -0.129 4.129 27 C -0.056 4.056 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.140 0.860 35 H 0.262 0.738 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.135 0.865 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 14.024 -1.895 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.153 3.847 4 C -0.262 4.262 5 C -0.046 4.046 6 C -0.203 4.203 7 C -0.008 4.008 8 C -0.816 4.816 9 S 2.741 3.259 10 O -0.967 6.967 11 O -1.008 7.008 12 N -0.677 5.677 13 C -0.419 4.419 14 H 0.115 0.885 15 C -0.211 4.211 16 N -0.553 5.553 17 Si 0.799 3.201 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.199 1.199 21 C 0.083 3.917 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.145 4.145 25 C -0.134 4.134 26 C -0.147 4.147 27 C -0.075 4.075 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.173 0.827 32 H 0.186 0.814 33 H 0.180 0.820 34 H 0.158 0.842 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.153 0.847 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.667 13.534 -2.496 13.862 hybrid contribution -1.296 -0.901 0.513 1.659 sum -2.963 12.632 -1.984 13.126 Atomic orbital electron populations 1.23381 0.76378 1.05328 1.02610 1.86329 1.23856 1.26773 1.86837 1.18769 0.90928 0.85851 0.89199 1.21611 1.01348 0.92066 1.11134 1.21604 0.94884 0.97510 0.90559 1.21472 0.94422 0.98653 1.05728 1.21037 1.00426 0.90292 0.89027 1.30601 1.05334 1.21157 1.24470 1.04013 0.74572 0.73400 0.73931 1.93569 1.32474 1.83551 1.87136 1.93360 1.79426 1.70286 1.57771 1.53415 1.47950 1.39144 1.27161 1.19615 1.18396 1.06760 0.97106 0.88461 1.25859 0.99159 1.01716 0.94358 1.70211 1.44385 1.41255 0.99439 0.85140 0.78300 0.78273 0.78375 1.19181 1.20691 1.19923 1.20115 0.91725 0.91539 0.88334 1.20642 0.96315 0.95741 1.01484 1.20988 0.99202 0.92485 1.00825 1.21216 0.94513 0.98175 1.00562 1.21374 0.95274 0.97551 0.99232 1.21234 1.00305 0.92652 1.00533 1.20835 0.93260 0.98793 0.94617 0.87615 0.90815 0.90750 0.82711 0.81369 0.81993 0.84218 0.92715 0.93881 0.89522 0.87931 0.83680 0.83179 0.84711 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.88 113.37 1.12 1.61 16 2 O -0.33 -13.53 8.23 -84.61 -0.70 -14.23 16 3 C 0.20 7.76 6.63 22.51 0.15 7.90 16 4 C -0.24 -6.88 9.08 22.37 0.20 -6.67 16 5 C -0.03 -0.63 10.04 22.25 0.22 -0.40 16 6 C -0.18 -4.53 10.04 22.28 0.22 -4.31 16 7 C 0.01 0.38 6.07 22.26 0.14 0.51 16 8 C -0.73 -30.01 4.91 22.37 0.11 -29.90 16 9 S 2.64 130.26 4.63 -56.49 -0.26 130.00 16 10 O -0.98 -46.59 11.69 -128.00 -1.50 -48.09 16 11 O -1.02 -57.04 15.99 -123.32 -1.97 -59.01 16 12 N -0.85 -44.19 3.32 -347.19 -1.15 -45.35 16 13 C -0.28 -15.69 8.60 84.03 0.72 -14.96 16 14 H 0.10 5.57 6.92 -2.91 -0.02 5.55 16 15 C -0.01 -0.55 5.44 84.86 0.46 -0.09 16 16 N -0.91 -48.80 9.49 21.65 0.21 -48.60 16 17 Si 0.97 42.50 29.56 68.60 2.03 44.53 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 C 0.21 10.33 4.65 85.63 0.40 10.72 16 22 C -0.14 -5.89 3.04 -19.87 -0.06 -5.95 16 23 C -0.12 -4.25 5.93 22.27 0.13 -4.12 16 24 C -0.13 -3.62 7.53 22.27 0.17 -3.46 16 25 C -0.12 -3.15 10.04 22.27 0.22 -2.92 16 26 C -0.13 -4.09 9.98 22.27 0.22 -3.87 16 27 C -0.06 -2.20 7.16 22.27 0.16 -2.04 16 28 H 0.11 2.84 8.14 -2.39 -0.02 2.83 16 29 H 0.07 1.75 7.16 -2.39 -0.02 1.73 16 30 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 31 H 0.16 3.38 6.28 -2.91 -0.02 3.36 16 32 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.14 4.69 5.51 -2.91 -0.02 4.67 16 35 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 36 H 0.04 2.28 7.59 -2.39 -0.02 2.27 16 37 H 0.09 4.60 6.26 -2.38 -0.01 4.58 16 38 H 0.10 3.91 7.81 -2.91 -0.02 3.89 16 39 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 41 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 42 H 0.10 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -72.37 343.64 2.29 -70.08 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 1.04 Total: 28.62 kcal Atomic # 6 Polarization: -62.55 SS G_CDS: 4.59 Total: -57.96 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -0.95 Total: -93.94 kcal Atomic # 8 Polarization: -117.16 SS G_CDS: -4.16 Total: -121.33 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 130.26 SS G_CDS: -0.26 Total: 130.00 kcal Total: -72.37 2.29 -70.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053669815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.437 kcal (2) G-P(sol) polarization free energy of solvation -72.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds