Wall clock time and date at job start Wed Apr 1 2020 04:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38233 * 120.00073 * 2 1 4 4 C 1.38239 * 120.00190 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99602 * 0.02562 * 4 3 2 6 6 S 1.76205 * 119.99793 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.40073 * 336.46423 * 6 5 4 8 8 O 1.42094 * 106.40186 * 203.54156 * 6 5 4 9 9 N 1.65598 * 107.21690 * 90.00110 * 6 5 4 10 10 C 1.46498 * 119.99837 * 64.99992 * 9 6 5 11 11 C 1.50695 * 109.47300 * 164.99633 * 10 9 6 12 12 C 1.38300 * 119.93634 * 269.73138 * 11 10 9 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31556 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47268 * 60.00314 * 20 18 16 22 22 H 1.48504 * 109.46929 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47219 * 300.00047 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 C 1.38234 * 120.00278 * 0.25646 * 5 4 3 27 27 C 1.38237 * 119.99925 * 359.46902 * 26 5 4 28 28 H 1.09003 * 109.46990 * 89.99395 * 1 2 3 29 29 H 1.08994 * 109.46977 * 209.99717 * 1 2 3 30 30 H 1.09002 * 109.47047 * 329.99971 * 1 2 3 31 31 H 1.08007 * 120.00164 * 359.97438 * 3 2 1 32 32 H 1.07995 * 120.00086 * 179.97438 * 4 3 2 33 33 H 0.96996 * 119.99867 * 244.99922 * 9 6 5 34 34 H 1.08999 * 109.47244 * 45.00057 * 10 9 6 35 35 H 1.09004 * 109.47345 * 285.00119 * 10 9 6 36 36 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 37 37 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 38 38 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 40 40 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 41 41 H 1.07994 * 120.00113 * 179.72484 * 26 5 4 42 42 H 1.07995 * 120.00056 * 180.27878 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 16 6.0337 -0.0001 0.0005 7 8 6.4350 1.2497 -0.5438 8 8 6.4349 -1.2497 -0.5439 9 7 6.5239 -0.0001 1.5823 10 6 6.2285 -1.1500 2.4406 11 6 7.0744 -1.0779 3.6857 12 6 8.3194 -1.6795 3.7100 13 6 9.0994 -1.6103 4.8476 14 6 8.6273 -0.9457 5.9720 15 8 9.3888 -0.8815 7.0939 16 6 8.9218 -0.1262 8.1084 17 1 7.9441 0.3273 8.0383 18 6 9.6967 0.0685 9.2416 19 7 10.8878 -0.4835 9.3268 20 14 9.0492 1.1145 10.6473 21 1 7.7931 0.5191 11.1697 22 1 10.0611 1.1655 11.7331 23 1 8.7787 2.4899 10.1571 24 6 7.3742 -0.3475 5.9464 25 6 6.6014 -0.4154 4.8039 26 6 3.5805 -1.1972 -0.0054 27 6 2.1982 -1.1972 -0.0002 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1324 0.0001 33 1 7.0065 0.7612 1.9405 34 1 6.4514 -2.0715 1.9029 35 1 5.1740 -1.1362 2.7164 36 1 8.6839 -2.2005 2.8370 37 1 10.0734 -2.0765 4.8644 38 1 11.4297 -0.3476 10.1197 39 1 7.0042 0.1696 6.8194 40 1 5.6270 0.0499 4.7832 41 1 4.1205 -2.1324 -0.0098 42 1 1.6582 -2.1325 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067950569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:23 Heat of formation + Delta-G solvation = -55.973627 kcal Electronic energy + Delta-G solvation = -26608.281886 eV Core-core repulsion = 22645.801838 eV Total energy + Delta-G solvation = -3962.480048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.66570 -39.18471 -37.36895 -37.03573 -35.92446 -34.68214 -33.39770 -32.34853 -31.40596 -30.27453 -29.51700 -27.68139 -25.79963 -24.54211 -23.21849 -22.26282 -22.05567 -20.70572 -19.64378 -18.26916 -18.04486 -17.58139 -17.01495 -16.37733 -15.82377 -15.62045 -15.07076 -14.73301 -14.66507 -14.52504 -14.29240 -14.12604 -13.90098 -13.79792 -13.61460 -13.10616 -12.79430 -12.76656 -12.67433 -12.57773 -12.41967 -12.20836 -12.14263 -12.08895 -11.72153 -11.52369 -11.32680 -11.01528 -10.86974 -10.76126 -10.71831 -10.50167 -9.57980 -9.44940 -9.40691 -9.38119 -8.91137 -8.28020 -7.32344 -6.52886 -4.11747 0.23152 0.53225 0.95581 2.11372 2.13692 2.92290 3.08397 3.09559 3.12561 3.23186 3.68423 3.90174 4.15004 4.35067 4.42185 4.49292 4.55175 4.88512 4.93965 4.98881 5.01953 5.08679 5.19305 5.22080 5.24851 5.30017 5.52672 5.53978 5.59989 5.64083 5.75097 5.76900 5.80100 5.96821 6.06473 6.13252 6.33842 6.49008 6.60540 6.80799 6.91850 7.00952 7.16150 7.26705 7.35207 7.71994 7.91590 8.92205 9.60701 10.64536 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.002235 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.767720 B =12524.635042 C =13458.110615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.033 4.033 3 C -0.144 4.144 4 C -0.014 4.014 5 C -0.681 4.681 6 S 2.693 3.307 7 O -0.964 6.964 8 O -0.959 6.959 9 N -1.109 6.109 10 C 0.176 3.824 11 C -0.206 4.206 12 C -0.054 4.054 13 C -0.195 4.195 14 C 0.160 3.840 15 O -0.173 6.173 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.237 4.237 25 C -0.053 4.053 26 C -0.016 4.016 27 C -0.144 4.144 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.421 0.579 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.272 0.728 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.141 0.859 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.880 1.079 -16.866 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.034 4.034 3 C -0.163 4.163 4 C -0.033 4.033 5 C -0.767 4.767 6 S 2.783 3.217 7 O -0.954 6.954 8 O -0.949 6.949 9 N -0.870 5.870 10 C 0.051 3.949 11 C -0.208 4.208 12 C -0.073 4.073 13 C -0.214 4.214 14 C 0.105 3.895 15 O -0.075 6.075 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.493 5.493 20 Si 0.767 3.233 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.257 4.257 25 C -0.072 4.072 26 C -0.036 4.036 27 C -0.162 4.162 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.257 0.743 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.145 0.855 40 H 0.126 0.874 41 H 0.159 0.841 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.039 0.793 -17.434 25.099 hybrid contribution -0.914 0.911 1.270 1.811 sum -18.953 1.705 -16.164 24.969 Atomic orbital electron populations 1.20943 0.90629 1.03514 1.02935 1.20284 0.96480 0.93371 0.93221 1.21186 0.94210 0.97996 1.02928 1.20935 0.94680 0.96692 0.91038 1.31026 1.27523 0.99462 1.18683 1.01877 0.73559 0.73568 0.72735 1.93582 1.81394 1.43825 1.76614 1.93578 1.80464 1.44278 1.76579 1.55682 1.71985 1.28872 1.30495 1.19986 0.97840 0.87268 0.89769 1.19072 0.97496 1.09221 0.95053 1.20573 0.92964 0.97145 0.96587 1.20232 1.01533 1.07403 0.92242 1.19448 0.90130 0.92477 0.87437 1.83977 1.43744 1.60173 1.19651 1.21301 1.02864 1.28682 0.94135 0.88990 1.25319 0.95246 0.97601 0.98314 1.70026 1.09273 1.41012 1.29010 0.85763 0.78547 0.79618 0.79405 1.19458 1.20215 1.19438 1.21144 0.96189 1.08504 0.99832 1.20623 0.98046 0.96259 0.92242 1.20973 0.94733 0.96710 0.91142 1.21191 0.94216 0.97997 1.02827 0.90399 0.90887 0.90933 0.85115 0.84196 0.74321 0.90282 0.91944 0.86696 0.86332 0.91818 0.85460 0.87400 0.84080 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 36.01 0.36 -0.24 16 2 C -0.03 -0.26 5.88 -104.62 -0.62 -0.87 16 3 C -0.14 -1.18 9.70 -39.58 -0.38 -1.56 16 4 C -0.01 -0.14 9.52 -39.58 -0.38 -0.51 16 5 C -0.68 -7.07 5.95 -39.58 -0.24 -7.31 16 6 S 2.69 31.94 5.74 -107.50 -0.62 31.32 16 7 O -0.96 -13.72 17.28 -57.17 -0.99 -14.70 16 8 O -0.96 -13.65 16.75 -57.17 -0.96 -14.61 16 9 N -1.11 -12.63 5.99 -11.66 -0.07 -12.70 16 10 C 0.18 2.11 6.34 -5.20 -0.03 2.08 16 11 C -0.21 -3.17 5.28 -104.58 -0.55 -3.72 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 13 C -0.19 -3.92 9.99 -39.39 -0.39 -4.32 16 14 C 0.16 3.69 6.65 -39.10 -0.26 3.43 16 15 O -0.17 -4.78 9.76 0.07 0.00 -4.78 16 16 C -0.39 -10.66 9.49 30.89 0.29 -10.36 16 17 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 20 Si 0.94 19.94 29.55 -169.99 -5.02 14.91 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.24 -4.83 9.17 -39.39 -0.36 -5.19 16 25 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 26 C -0.02 -0.16 9.52 -39.58 -0.38 -0.53 16 27 C -0.14 -1.16 9.70 -39.58 -0.38 -1.55 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 32 H 0.14 1.19 7.62 -52.49 -0.40 0.79 16 33 H 0.42 4.64 8.64 -34.47 -0.30 4.34 16 34 H 0.08 0.89 7.69 -51.93 -0.40 0.49 16 35 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 38 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.13 2.60 5.64 -52.49 -0.30 2.31 16 40 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 41 H 0.14 1.17 7.61 -52.49 -0.40 0.78 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -33.87 375.55 -10.42 -44.29 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.00 Total: 6.71 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -4.18 Total: -32.23 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.69 Total: -36.57 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.94 Total: -34.09 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 31.94 SS G_CDS: -0.62 Total: 31.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.87 -10.42 -44.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067950569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.684 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds