Wall clock time and date at job start Wed Apr 1 2020 04:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38304 * 120.07256 * 0.53125 * 12 11 10 14 14 C 1.50699 * 119.93206 * 179.74744 * 13 12 11 15 15 N 1.46505 * 109.46837 * 270.01794 * 14 13 12 16 16 S 1.65602 * 119.99755 * 165.00307 * 15 14 13 17 17 O 1.42096 * 104.27343 * 181.07545 * 16 15 14 18 18 O 1.42099 * 104.27508 * 308.92728 * 16 15 14 19 19 C 1.81397 * 104.45139 * 65.00191 * 16 15 14 20 20 C 1.50698 * 109.47271 * 179.97438 * 19 16 15 21 21 C 1.38233 * 119.99953 * 269.72720 * 20 19 16 22 22 C 1.38237 * 119.99691 * 179.76427 * 21 20 19 23 23 C 1.38245 * 119.99943 * 0.50773 * 22 21 20 24 24 C 1.38231 * 119.99746 * 359.74527 * 23 22 21 25 25 C 1.38236 * 120.00451 * 0.02562 * 24 23 22 26 26 C 1.38305 * 120.13385 * 359.76794 * 13 12 11 27 27 C 1.38101 * 120.07071 * 359.95556 * 26 13 12 28 28 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 31 31 H 1.08986 * 109.47504 * 30.02088 * 14 13 12 32 32 H 1.09005 * 109.46821 * 150.02396 * 14 13 12 33 33 H 0.96998 * 119.99902 * 345.00153 * 15 14 13 34 34 H 1.09000 * 109.46719 * 300.00107 * 19 16 15 35 35 H 1.08998 * 109.46850 * 59.99421 * 19 16 15 36 36 H 1.07995 * 119.99855 * 359.97438 * 21 20 19 37 37 H 1.08000 * 120.00284 * 180.23097 * 22 21 20 38 38 H 1.07995 * 119.99743 * 179.72631 * 23 22 21 39 39 H 1.08004 * 119.99846 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00124 * 179.97438 * 25 24 23 41 41 H 1.07999 * 119.96326 * 179.97438 * 26 13 12 42 42 H 1.07997 * 120.03156 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 7 6.2546 -6.6939 -0.8897 16 16 7.3294 -7.9421 -1.0607 17 8 7.4308 -8.1272 -2.4659 18 8 8.4554 -7.5427 -0.2913 19 6 6.5024 -9.3605 -0.2897 20 6 7.3923 -10.5730 -0.3838 21 6 7.3003 -11.4148 -1.4765 22 6 8.1201 -12.5243 -1.5651 23 6 9.0246 -12.7978 -0.5560 24 6 9.1128 -11.9589 0.5391 25 6 8.2964 -10.8468 0.6255 26 6 3.8531 -4.7987 0.2042 27 6 3.2232 -3.5745 0.0950 28 1 -0.4849 0.8401 0.0004 29 1 5.9419 -1.5655 0.2316 30 1 7.0534 -3.7517 0.4353 31 1 6.8228 -6.0905 1.0369 32 1 5.2443 -6.9068 0.9360 33 1 5.8509 -6.2906 -1.6741 34 1 6.3005 -9.1379 0.7581 35 1 5.5633 -9.5585 -0.8065 36 1 6.5904 -11.2037 -2.2624 37 1 8.0509 -13.1799 -2.4205 38 1 9.6619 -13.6671 -0.6232 39 1 9.8191 -12.1728 1.3277 40 1 8.3651 -10.1916 1.4813 41 1 3.2703 -5.7080 0.1940 42 1 2.1486 -3.5262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067950638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:46 Heat of formation + Delta-G solvation = -71.693314 kcal Electronic energy + Delta-G solvation = -26323.569939 eV Core-core repulsion = 22360.408234 eV Total energy + Delta-G solvation = -3963.161705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92785 -40.19437 -38.79860 -38.15399 -37.01322 -35.87539 -34.42391 -34.02323 -31.86035 -31.83769 -31.07810 -28.34971 -27.62096 -25.76906 -23.69463 -23.57627 -22.65174 -22.10035 -20.36634 -19.83733 -19.15589 -18.68833 -17.98009 -17.57160 -17.11968 -16.68142 -16.41864 -16.16077 -16.05857 -15.76735 -15.69135 -15.46519 -15.03705 -14.64411 -14.35675 -14.31339 -14.21629 -14.07634 -13.81549 -13.72985 -13.59431 -13.49243 -13.18410 -13.09404 -12.99372 -12.52938 -12.40715 -12.36968 -12.18966 -11.97260 -11.95782 -11.91510 -11.28487 -10.91427 -10.45550 -9.90950 -9.80994 -9.66952 -9.06665 -8.50768 -6.23071 -0.87626 0.38131 0.41941 0.56191 0.57420 1.31672 1.34968 1.50999 1.83539 2.27132 2.71001 2.77326 2.87446 3.03725 3.16100 3.22264 3.41156 3.78670 3.85562 4.05575 4.09587 4.17137 4.19664 4.25951 4.47077 4.49839 4.53354 4.55893 4.58769 4.65333 4.81647 4.98053 4.99440 5.02169 5.09539 5.25934 5.36200 5.47513 5.48289 5.55981 5.57336 5.73389 5.80256 5.90245 6.01532 6.07034 6.22804 6.83801 7.58108 8.60394 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.034111 B = 0.001847 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.650021 B =15157.836997 C =15383.941333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.398 4.398 8 H 0.085 0.915 9 O -0.246 6.246 10 C 0.124 3.876 11 C -0.197 4.197 12 C -0.055 4.055 13 C -0.167 4.167 14 C 0.165 3.835 15 N -1.113 6.113 16 S 2.614 3.386 17 O -0.993 6.993 18 O -0.986 6.986 19 C -0.566 4.566 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.130 4.130 23 C -0.117 4.117 24 C -0.129 4.129 25 C -0.122 4.122 26 C -0.050 4.050 27 C -0.240 4.240 28 H 0.284 0.716 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.421 0.579 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.277 -26.138 1.675 30.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.103 0.897 9 O -0.153 6.153 10 C 0.075 3.925 11 C -0.216 4.216 12 C -0.074 4.074 13 C -0.169 4.169 14 C 0.041 3.959 15 N -0.873 5.873 16 S 2.711 3.289 17 O -0.984 6.984 18 O -0.976 6.976 19 C -0.696 4.696 20 C -0.116 4.116 21 C -0.144 4.144 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.068 4.068 27 C -0.259 4.259 28 H 0.094 0.906 29 H 0.143 0.857 30 H 0.165 0.835 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.256 0.744 34 H 0.189 0.811 35 H 0.186 0.814 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.102 -25.768 1.408 30.959 hybrid contribution -1.241 0.969 -0.202 1.588 sum 15.861 -24.799 1.206 29.462 Atomic orbital electron populations 1.69722 1.06809 1.29568 1.50020 1.25257 0.95873 1.02079 0.95600 0.85244 0.78812 0.77653 0.79189 1.19260 1.19271 1.18782 1.20723 0.78005 0.96187 1.52516 0.89738 1.83521 1.21369 1.27693 1.82731 1.19752 0.93163 0.85269 0.94317 1.20502 0.90705 0.99770 1.10667 1.21020 1.00300 0.90440 0.95597 1.19620 0.93067 0.94947 1.09284 1.20264 1.00506 0.92376 0.82784 1.55581 1.65746 1.51251 1.14768 1.04786 0.74527 0.75814 0.73755 1.93548 1.86458 1.86605 1.31745 1.93546 1.49740 1.80925 1.73371 1.29484 1.11464 1.11513 1.17123 1.19215 0.98617 0.96692 0.97122 1.21506 1.00159 0.95025 0.97706 1.21545 0.95783 0.97459 0.99962 1.21662 0.98226 1.00088 0.93607 1.21557 0.99315 0.94506 0.99274 1.21525 0.95466 0.98318 0.98816 1.21040 0.94280 0.96486 0.95012 1.21327 1.00363 0.93184 1.11041 0.90587 0.85741 0.83483 0.88970 0.87648 0.74382 0.81104 0.81419 0.84373 0.83569 0.83320 0.83418 0.83965 0.83302 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.09 13.96 21.61 0.30 -53.79 16 2 C 0.01 0.60 5.49 84.83 0.47 1.07 16 3 Si 0.97 44.99 28.62 68.60 1.96 46.95 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.40 -22.91 9.95 67.92 0.68 -22.23 16 8 H 0.09 5.04 5.44 -2.91 -0.02 5.03 16 9 O -0.25 -13.07 8.59 -22.72 -0.20 -13.27 16 10 C 0.12 5.58 6.65 22.58 0.15 5.73 16 11 C -0.20 -7.25 9.99 22.39 0.22 -7.03 16 12 C -0.05 -1.58 9.69 22.25 0.22 -1.36 16 13 C -0.17 -4.22 5.28 -19.83 -0.10 -4.33 16 14 C 0.17 2.76 6.25 85.63 0.54 3.29 16 15 N -1.11 -19.23 5.88 -190.79 -1.12 -20.36 16 16 S 2.61 49.42 5.44 -56.49 -0.31 49.11 16 17 O -0.99 -26.08 18.08 -127.65 -2.31 -28.38 16 18 O -0.99 -24.86 17.50 -127.65 -2.23 -27.10 16 19 C -0.57 -6.16 6.20 71.24 0.44 -5.71 16 20 C -0.11 -1.74 5.14 -19.87 -0.10 -1.84 16 21 C -0.12 -1.88 9.70 22.27 0.22 -1.66 16 22 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 23 C -0.12 -1.35 10.05 22.27 0.22 -1.13 16 24 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 25 C -0.12 -1.76 9.70 22.27 0.22 -1.55 16 26 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 27 C -0.24 -9.70 9.17 22.39 0.21 -9.50 16 28 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 30 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.09 1.43 7.64 -2.39 -0.02 1.41 16 32 H 0.11 0.99 8.08 -2.38 -0.02 0.97 16 33 H 0.42 7.55 8.61 -96.74 -0.83 6.72 16 34 H 0.17 0.87 8.09 -2.39 -0.02 0.85 16 35 H 0.17 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 39 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 40 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 41 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 42 H 0.11 4.97 5.64 -2.91 -0.02 4.95 16 Total: -1.00 -78.42 376.77 0.35 -78.07 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.22 Total: 19.06 kcal Atomic # 6 Polarization: -54.32 SS G_CDS: 4.03 Total: -50.29 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -0.82 Total: -74.15 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -4.74 Total: -68.75 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.96 Total: 46.95 kcal Atomic # 16 Polarization: 49.42 SS G_CDS: -0.31 Total: 49.11 kcal Total: -78.42 0.35 -78.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067950638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.376 kcal (2) G-P(sol) polarization free energy of solvation -78.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds