Wall clock time and date at job start Wed Apr 1 2020 04:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48497 * 109.47231 * 269.99668 * 3 2 1 5 5 H 1.48499 * 109.47342 * 30.00193 * 3 2 1 6 6 H 1.48505 * 109.46935 * 149.99895 * 3 2 1 7 7 C 1.37881 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99733 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00081 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99537 * 269.99553 * 10 9 7 12 12 C 1.52998 * 109.47320 * 269.99999 * 11 10 9 13 13 C 1.53001 * 117.50250 * 243.75090 * 12 11 10 14 14 C 1.52993 * 117.49859 * 175.08875 * 12 11 10 15 15 C 1.34777 * 120.00199 * 90.00203 * 10 9 7 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 10 9 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 10 9 18 18 S 1.81396 * 109.46989 * 179.72353 * 17 15 10 19 19 C 1.81397 * 102.99966 * 179.97438 * 18 17 15 20 20 H 1.09004 * 110.01477 * 54.29577 * 19 18 17 21 21 C 1.53874 * 110.02970 * 175.67741 * 19 18 17 22 22 C 1.54169 * 108.70775 * 166.47004 * 21 19 18 23 23 S 1.82912 * 105.08292 * 332.09214 * 22 21 19 24 24 O 1.42097 * 109.35610 * 115.52341 * 23 22 21 25 25 O 1.42101 * 109.35600 * 248.58869 * 23 22 21 26 26 C 1.55056 * 110.02698 * 292.91849 * 19 18 17 27 27 H 0.97004 * 119.99796 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46867 * 59.99962 * 9 7 2 29 29 H 1.09005 * 109.46937 * 299.99970 * 9 7 2 30 30 H 1.08994 * 109.46996 * 30.00327 * 11 10 9 31 31 H 1.09001 * 109.46578 * 150.00190 * 11 10 9 32 32 H 1.09001 * 115.54991 * 29.41912 * 12 11 10 33 33 H 1.08997 * 117.49565 * 359.97438 * 13 12 11 34 34 H 1.08994 * 117.49846 * 145.01594 * 13 12 11 35 35 H 1.09000 * 117.49956 * 214.97916 * 14 12 11 36 36 H 1.09001 * 117.49952 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.46965 * 299.72211 * 17 15 10 38 38 H 1.08994 * 109.46990 * 59.72065 * 17 15 10 39 39 H 1.08996 * 109.64765 * 286.32422 * 21 19 18 40 40 H 1.08999 * 109.64894 * 46.61996 * 21 19 18 41 41 H 1.09001 * 110.31628 * 90.99020 * 22 21 19 42 42 H 1.08997 * 110.31795 * 213.18733 * 22 21 19 43 43 H 1.09001 * 110.78505 * 316.54242 * 26 19 18 44 44 H 1.09002 * 110.78989 * 80.00547 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0010 11 6 4.2434 -3.2662 1.2698 12 6 5.6883 -3.0260 1.7120 13 6 6.6125 -4.2423 1.7976 14 6 6.1089 -3.5715 3.0781 15 6 4.2248 -3.2105 -1.1662 16 8 4.0227 -2.6387 -2.2165 17 6 4.7211 -4.6335 -1.1663 18 16 4.9171 -5.2054 -2.8765 19 6 5.5118 -6.9069 -2.6722 20 1 4.8279 -7.4671 -2.0345 21 6 5.6325 -7.5914 -4.0450 22 6 6.4486 -8.8890 -3.8805 23 16 7.5479 -8.5819 -2.4512 24 8 7.2076 -9.4704 -1.3958 25 8 8.8934 -8.4997 -2.9010 26 6 6.9327 -6.9018 -2.0515 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8889 30 1 3.5624 -2.8822 2.0292 31 1 4.0764 -4.3354 1.1391 32 1 6.1276 -2.0818 1.3901 33 1 6.1910 -5.2138 1.5393 34 1 7.6598 -4.0983 1.5324 35 1 6.8253 -2.9865 3.6548 36 1 5.3561 -4.1012 3.6620 37 1 5.6821 -4.6831 -0.6542 38 1 4.0015 -5.2693 -0.6507 39 1 4.6388 -7.8292 -4.4245 40 1 6.1396 -6.9257 -4.7433 41 1 5.7858 -9.7294 -3.6744 42 1 7.0380 -9.0816 -4.7769 43 1 7.5565 -6.1402 -2.5195 44 1 6.8831 -6.7537 -0.9728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103438296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:04 Heat of formation + Delta-G solvation = -70.922181 kcal Electronic energy + Delta-G solvation = -26305.541185 eV Core-core repulsion = 22477.856871 eV Total energy + Delta-G solvation = -3827.684314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.42236 -37.44061 -37.37902 -36.84401 -36.32196 -34.67345 -32.60453 -30.86367 -30.07937 -28.06454 -26.25028 -25.83274 -22.63701 -22.47767 -21.98764 -20.89967 -19.27803 -18.73751 -17.59950 -17.29692 -16.99459 -16.79635 -16.27405 -15.96706 -15.45075 -15.35769 -14.96242 -14.93374 -14.63751 -14.27496 -14.09292 -13.96709 -13.16959 -12.94621 -12.77091 -12.66772 -12.57067 -12.54776 -12.44420 -12.39570 -12.10823 -11.74001 -11.63097 -11.61055 -11.57699 -11.22200 -10.99355 -10.90458 -10.63053 -10.45996 -10.19599 -10.04664 -9.90562 -9.60713 -9.26463 -8.64247 -7.93173 -7.74003 -6.14161 -4.13696 -0.41524 1.23857 2.03183 2.38499 3.09400 3.13573 3.25146 3.30801 3.33152 3.54229 3.55340 3.78992 3.85084 4.02359 4.12167 4.34134 4.34577 4.42773 4.59304 4.76134 4.82571 4.87390 5.03462 5.06351 5.08218 5.14924 5.17716 5.21404 5.31515 5.34761 5.42363 5.50615 5.66264 5.79557 5.89322 6.00464 6.24350 6.58330 6.84009 7.17458 7.53349 8.03616 8.38776 8.73781 8.88833 9.45418 10.99085 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002828 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.395056 B = 9897.939423 C =11056.215170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.218 3.782 10 N -0.584 5.584 11 C 0.140 3.860 12 C -0.169 4.169 13 C -0.189 4.189 14 C -0.172 4.172 15 C 0.527 3.473 16 O -0.519 6.519 17 C -0.133 4.133 18 S -0.131 6.131 19 C -0.093 4.093 20 H 0.111 0.889 21 C -0.092 4.092 22 C -0.586 4.586 23 S 2.387 3.613 24 O -0.936 6.936 25 O -0.937 6.937 26 C -0.585 4.585 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.152 0.848 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.907 -17.123 -1.501 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.098 3.902 10 N -0.315 5.315 11 C 0.015 3.985 12 C -0.188 4.188 13 C -0.226 4.226 14 C -0.210 4.210 15 C 0.311 3.689 16 O -0.395 6.395 17 C -0.284 4.284 18 S 0.097 5.903 19 C -0.223 4.223 20 H 0.130 0.870 21 C -0.132 4.132 22 C -0.718 4.718 23 S 2.569 3.431 24 O -0.934 6.934 25 O -0.934 6.934 26 C -0.716 4.716 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.170 0.830 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.102 -16.650 -2.575 22.625 hybrid contribution -0.088 0.682 1.065 1.268 sum 15.014 -15.968 -1.510 21.970 Atomic orbital electron populations 1.69893 1.06207 1.27073 1.50199 1.24845 0.94757 0.98946 0.94338 0.86861 0.80161 0.83801 0.78929 1.19845 1.21016 1.19059 1.21290 0.89045 0.94885 1.51760 0.90722 1.19711 0.95779 0.77192 0.97563 1.47783 1.63897 1.15917 1.03909 1.21099 0.93370 0.96727 0.87258 1.22951 0.96721 0.98512 1.00656 1.23092 0.99751 0.96894 1.02886 1.22913 1.03565 1.03898 0.90585 1.19322 0.78742 0.86177 0.84625 1.90729 1.51309 1.66944 1.30525 1.23774 1.06019 1.00014 0.98585 1.87575 1.86184 1.07850 1.08699 1.23955 0.96522 1.01571 1.00254 0.87040 1.21632 1.03331 0.92767 0.95429 1.30485 1.15025 1.06070 1.20171 1.09241 0.76838 0.78868 0.78130 1.93629 1.85169 1.61570 1.52985 1.93623 1.31729 1.86315 1.81727 1.31106 1.05911 1.23571 1.11050 0.92482 0.94952 0.94447 0.88845 0.91231 0.87305 0.89004 0.88937 0.88815 0.88517 0.87223 0.87469 0.87768 0.88531 0.84242 0.83938 0.83018 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.53 -14.80 9.94 -34.44 -0.34 -15.15 16 8 H 0.07 2.28 8.06 -52.48 -0.42 1.86 16 9 C 0.22 5.10 4.23 -5.20 -0.02 5.07 16 10 N -0.58 -11.17 2.46 -175.06 -0.43 -11.60 16 11 C 0.14 2.01 5.50 -4.04 -0.02 1.99 16 12 C -0.17 -2.02 5.97 -90.62 -0.54 -2.56 16 13 C -0.19 -1.75 9.19 -26.69 -0.25 -2.00 16 14 C -0.17 -1.66 10.25 -26.70 -0.27 -1.93 16 15 C 0.53 10.06 7.69 -10.98 -0.08 9.97 16 16 O -0.52 -12.27 15.44 5.55 0.09 -12.19 16 17 C -0.13 -1.75 4.85 36.01 0.17 -1.57 16 18 S -0.13 -1.65 20.31 -107.50 -2.18 -3.83 16 19 C -0.09 -0.68 3.08 -25.19 -0.08 -0.76 16 20 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.09 -0.51 5.76 -25.67 -0.15 -0.66 16 22 C -0.59 -2.50 7.26 37.77 0.27 -2.22 16 23 S 2.39 16.55 6.10 -107.50 -0.66 15.89 16 24 O -0.94 -9.75 18.14 -57.73 -1.05 -10.80 16 25 O -0.94 -9.91 18.15 -57.73 -1.05 -10.96 16 26 C -0.59 -3.67 6.55 38.24 0.25 -3.42 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 29 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 30 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.07 0.82 6.17 -51.93 -0.32 0.50 16 32 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.09 0.73 7.87 -51.93 -0.41 0.33 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 1.16 6.86 -51.92 -0.36 0.80 16 38 H 0.11 1.22 7.40 -51.93 -0.38 0.83 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.52 8.11 -51.93 -0.42 0.09 16 41 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.15 0.88 8.11 -51.93 -0.42 0.46 16 44 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -38.83 384.72 -11.38 -50.21 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.85 Total: -1.38 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.15 Total: -11.23 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.34 Total: -37.98 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -2.01 Total: -33.95 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 14.90 SS G_CDS: -2.84 Total: 12.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.83 -11.38 -50.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.713 kcal (2) G-P(sol) polarization free energy of solvation -38.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds