Wall clock time and date at job start Wed Apr 1 2020 04:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48500 * 109.46965 * 240.00116 * 3 2 1 5 5 H 1.48499 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47354 * 120.00363 * 3 2 1 7 7 C 1.38953 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00088 * 156.93293 * 7 2 1 9 9 N 1.37095 * 119.99974 * 336.93174 * 7 2 1 10 10 C 1.34779 * 120.00004 * 307.90317 * 9 7 2 11 11 O 1.21300 * 120.00002 * 180.02562 * 10 9 7 12 12 C 1.50701 * 120.00227 * 359.97438 * 10 9 7 13 13 S 1.81398 * 109.47096 * 180.02562 * 12 10 9 14 14 C 1.81404 * 102.99776 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.64095 * 305.69975 * 14 13 12 16 16 C 1.53879 * 109.64491 * 66.12914 * 14 13 12 17 17 C 1.54974 * 106.65617 * 167.15300 * 16 14 13 18 18 S 1.83285 * 102.47916 * 317.38209 * 17 16 14 19 19 O 1.42100 * 109.35529 * 269.89991 * 18 17 16 20 20 O 1.42104 * 109.47479 * 136.73787 * 18 17 16 21 21 C 1.54159 * 109.64393 * 185.26941 * 14 13 12 22 22 C 1.46498 * 119.99933 * 127.90268 * 9 7 2 23 23 C 1.53880 * 110.03319 * 60.83939 * 22 9 7 24 24 C 1.54262 * 106.59689 * 240.71321 * 23 22 9 25 25 C 1.54883 * 104.20004 * 336.38842 * 24 23 22 26 26 C 1.54264 * 110.03391 * 303.67365 * 22 9 7 27 27 H 0.96996 * 120.00229 * 355.39166 * 1 2 3 28 28 H 1.08993 * 109.47243 * 300.00222 * 12 10 9 29 29 H 1.08999 * 109.46680 * 59.99915 * 12 10 9 30 30 H 1.08994 * 110.02914 * 286.31943 * 16 14 13 31 31 H 1.09000 * 110.02970 * 47.74694 * 16 14 13 32 32 H 1.08999 * 110.75657 * 199.17548 * 17 16 14 33 33 H 1.08995 * 110.90932 * 75.65559 * 17 16 14 34 34 H 1.09001 * 110.32387 * 331.14326 * 21 14 13 35 35 H 1.09003 * 110.31978 * 93.33983 * 21 14 13 36 36 H 1.09008 * 110.05673 * 182.25528 * 22 9 7 37 37 H 1.09003 * 110.02938 * 0.02562 * 23 22 9 38 38 H 1.09002 * 110.03066 * 121.42546 * 23 22 9 39 39 H 1.08999 * 110.48324 * 95.07256 * 24 23 22 40 40 H 1.09001 * 110.48667 * 217.70531 * 24 23 22 41 41 H 1.08999 * 110.75867 * 279.62780 * 25 24 23 42 42 H 1.08996 * 110.75884 * 156.25395 * 25 24 23 43 43 H 1.09003 * 110.48468 * 261.56849 * 26 22 9 44 44 H 1.08991 * 110.48610 * 24.21392 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0241 -1.2406 -0.3670 9 7 1.4056 -2.3434 0.4642 10 6 0.8254 -2.3509 1.6807 11 8 0.2921 -3.3597 2.0920 12 6 0.8403 -1.1063 2.5303 13 16 -0.0129 -1.4337 4.0973 14 6 0.1070 0.1539 4.9666 15 1 1.1503 0.4648 5.0194 16 6 -0.7127 1.2180 4.2158 17 6 -0.8383 2.4349 5.1672 18 16 -1.1916 1.6411 6.7810 19 8 -2.5970 1.5037 6.9406 20 8 -0.4222 2.2698 7.7968 21 6 -0.4634 0.0089 6.3914 22 6 1.3916 -3.5534 -0.3616 23 6 2.8319 -4.0146 -0.6454 24 6 3.0129 -3.9770 -2.1769 25 6 1.5723 -4.0970 -2.7328 26 6 0.7477 -3.2516 -1.7305 27 1 -0.4850 0.8373 0.0675 28 1 1.8715 -0.8165 2.7322 29 1 0.3330 -0.2994 2.0016 30 1 -0.1950 1.5125 3.3030 31 1 -1.7012 0.8268 3.9753 32 1 -1.6637 3.0788 4.8638 33 1 0.0959 2.9949 5.2079 34 1 -1.2319 -0.7637 6.4148 35 1 0.3339 -0.2276 7.0961 36 1 0.8389 -4.3450 0.1446 37 1 3.5413 -3.3384 -0.1684 38 1 2.9783 -5.0300 -0.2769 39 1 3.4633 -3.0333 -2.4846 40 1 3.6216 -4.8176 -2.5099 41 1 1.2410 -5.1354 -2.7265 42 1 1.5092 -3.6763 -3.7364 43 1 -0.2969 -3.5630 -1.7378 44 1 0.8321 -2.1908 -1.9662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128270910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:06 Heat of formation + Delta-G solvation = -106.060377 kcal Electronic energy + Delta-G solvation = -27034.726490 eV Core-core repulsion = 23205.518469 eV Total energy + Delta-G solvation = -3829.208021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -39.08088 -37.16803 -36.76085 -36.50287 -36.04487 -34.35728 -31.71665 -30.16149 -29.09380 -28.04084 -26.81258 -25.41089 -24.77213 -21.73662 -20.18231 -19.99891 -19.46994 -18.96546 -17.20460 -17.02216 -16.61794 -16.07354 -15.77851 -15.50114 -15.39238 -14.81350 -14.51380 -14.48896 -14.33138 -14.07533 -13.49217 -13.44691 -12.76768 -12.61214 -12.59482 -12.48309 -12.28341 -12.17300 -12.11675 -12.03999 -11.68785 -11.42902 -11.24988 -11.06547 -10.95264 -10.79565 -10.73031 -10.58258 -10.57328 -10.43744 -10.33073 -10.07750 -9.76800 -9.56384 -8.95383 -8.54946 -7.57399 -7.15872 -6.61970 -4.44070 -0.11621 1.84823 2.46074 2.91787 2.93871 3.02200 3.04785 3.43925 3.82945 3.89229 3.92693 4.23446 4.38575 4.45692 4.61724 4.66337 4.68556 4.87158 5.27516 5.28129 5.29591 5.33598 5.47870 5.50472 5.72299 5.86251 5.98978 6.01051 6.06032 6.16057 6.22830 6.25866 6.35182 6.42840 6.46039 6.56415 6.63810 6.81683 7.00754 7.16907 7.25804 7.79469 8.43017 8.67847 9.35549 9.80509 10.38107 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.003241 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.099031 B = 8636.344762 C = 9584.160345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.048 3.952 3 Si 0.893 3.107 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.332 4.332 8 H 0.085 0.915 9 N -0.442 5.442 10 C 0.529 3.471 11 O -0.593 6.593 12 C -0.109 4.109 13 S -0.181 6.181 14 C -0.078 4.078 15 H 0.104 0.896 16 C -0.119 4.119 17 C -0.583 4.583 18 S 2.390 3.610 19 O -0.935 6.935 20 O -0.942 6.942 21 C -0.565 4.565 22 C 0.134 3.866 23 C -0.127 4.127 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.120 4.120 27 H 0.272 0.728 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 3.144 3.692 5.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.159 4.159 3 Si 0.718 3.282 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.460 4.460 8 H 0.103 0.897 9 N -0.162 5.162 10 C 0.317 3.683 11 O -0.478 6.478 12 C -0.260 4.260 13 S 0.047 5.953 14 C -0.208 4.208 15 H 0.123 0.877 16 C -0.160 4.160 17 C -0.715 4.715 18 S 2.573 3.427 19 O -0.932 6.932 20 O -0.940 6.940 21 C -0.695 4.695 22 C 0.030 3.970 23 C -0.166 4.166 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.158 4.158 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.153 0.847 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.901 2.126 4.979 5.488 hybrid contribution 1.457 1.862 -1.388 2.742 sum 2.358 3.988 3.590 5.861 Atomic orbital electron populations 1.70114 1.05927 1.28530 1.43585 1.25556 0.94979 0.99960 0.95409 0.86532 0.80026 0.81827 0.79855 1.19219 1.20555 1.19436 1.19193 0.97041 0.84773 1.44999 0.89745 1.43306 1.51141 1.09975 1.11779 1.19320 0.80142 0.87038 0.81818 1.90556 1.49440 1.34652 1.73146 1.23970 1.03504 1.04299 0.94196 1.87266 1.76996 1.12511 1.18550 1.23494 1.03357 0.99650 0.94289 0.87740 1.22709 1.03341 0.90588 0.99360 1.30603 1.12264 1.08439 1.20145 1.09095 0.76002 0.79361 0.78227 1.93622 1.28453 1.85530 1.85625 1.93602 1.72385 1.73608 1.54359 1.30374 1.13541 1.22408 1.03208 1.21610 0.94576 0.89158 0.91663 1.22415 0.98219 1.00227 0.95733 1.22258 0.96651 1.00784 0.95729 1.22448 0.95766 0.99413 0.98492 1.22575 0.97571 1.01917 0.93783 0.91727 0.88839 0.84731 0.88039 0.87847 0.84192 0.84479 0.83571 0.83723 0.90258 0.91130 0.92789 0.91702 0.92880 0.92456 0.92350 0.92973 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.66 11.47 55.50 0.64 -19.02 16 2 C 0.05 1.04 3.46 -17.47 -0.06 0.98 16 3 Si 0.89 16.93 29.61 -169.99 -5.03 11.89 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 7 C -0.33 -7.42 6.88 -14.93 -0.10 -7.53 16 8 H 0.08 1.86 7.33 -52.48 -0.38 1.48 16 9 N -0.44 -10.09 2.36 -106.54 -0.25 -10.34 16 10 C 0.53 12.65 7.19 -10.98 -0.08 12.57 16 11 O -0.59 -15.60 15.22 5.54 0.08 -15.52 16 12 C -0.11 -2.25 4.63 36.01 0.17 -2.08 16 13 S -0.18 -3.28 20.12 -107.50 -2.16 -5.44 16 14 C -0.08 -0.98 3.07 -25.67 -0.08 -1.06 16 15 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.12 -1.40 5.55 -25.23 -0.14 -1.54 16 17 C -0.58 -5.22 7.31 38.20 0.28 -4.94 16 18 S 2.39 25.18 6.10 -107.50 -0.66 24.53 16 19 O -0.94 -13.06 18.15 -57.73 -1.05 -14.11 16 20 O -0.94 -12.54 18.15 -57.73 -1.05 -13.59 16 21 C -0.57 -5.87 6.76 37.76 0.26 -5.61 16 22 C 0.13 2.78 3.29 -66.81 -0.22 2.56 16 23 C -0.13 -2.24 6.26 -25.61 -0.16 -2.40 16 24 C -0.12 -1.78 6.83 -25.08 -0.17 -1.95 16 25 C -0.12 -1.91 6.91 -24.74 -0.17 -2.08 16 26 C -0.12 -2.33 6.41 -25.07 -0.16 -2.49 16 27 H 0.27 5.98 8.31 -40.82 -0.34 5.64 16 28 H 0.09 1.81 8.10 -51.93 -0.42 1.39 16 29 H 0.14 2.83 4.44 -51.92 -0.23 2.59 16 30 H 0.10 1.26 7.74 -51.93 -0.40 0.86 16 31 H 0.10 1.24 8.12 -51.93 -0.42 0.82 16 32 H 0.14 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.15 1.54 7.85 -51.93 -0.41 1.13 16 35 H 0.14 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.77 6.95 -51.92 -0.36 1.41 16 37 H 0.07 1.30 7.03 -51.93 -0.37 0.94 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.09 1.99 6.97 -51.93 -0.36 1.63 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -31.25 371.31 -11.24 -42.49 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.72 Total: 9.07 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.64 Total: -15.56 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: 0.39 Total: -29.36 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -2.01 Total: -43.22 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.89 kcal Atomic # 16 Polarization: 21.90 SS G_CDS: -2.82 Total: 19.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.25 -11.24 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128270910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.571 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds