Wall clock time and date at job start Wed Apr 1 2020 04:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48500 * 109.46965 * 240.00116 * 3 2 1 5 5 H 1.48499 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47354 * 120.00363 * 3 2 1 7 7 C 1.38953 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00088 * 156.93293 * 7 2 1 9 9 N 1.37095 * 119.99974 * 336.93174 * 7 2 1 10 10 C 1.34779 * 120.00004 * 307.90317 * 9 7 2 11 11 O 1.21300 * 120.00002 * 180.02562 * 10 9 7 12 12 C 1.50701 * 120.00227 * 359.97438 * 10 9 7 13 13 S 1.81398 * 109.47096 * 180.02562 * 12 10 9 14 14 C 1.81404 * 102.99776 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.64095 * 305.69975 * 14 13 12 16 16 C 1.53879 * 109.64491 * 66.12914 * 14 13 12 17 17 C 1.54974 * 106.65617 * 167.15300 * 16 14 13 18 18 S 1.83285 * 102.47916 * 317.38209 * 17 16 14 19 19 O 1.42100 * 109.35529 * 269.89991 * 18 17 16 20 20 O 1.42104 * 109.47479 * 136.73787 * 18 17 16 21 21 C 1.54159 * 109.64393 * 185.26941 * 14 13 12 22 22 C 1.46498 * 119.99933 * 127.90268 * 9 7 2 23 23 C 1.53880 * 110.03319 * 60.83939 * 22 9 7 24 24 C 1.54262 * 106.59689 * 240.71321 * 23 22 9 25 25 C 1.54883 * 104.20004 * 336.38842 * 24 23 22 26 26 C 1.54264 * 110.03391 * 303.67365 * 22 9 7 27 27 H 0.96996 * 120.00229 * 355.39166 * 1 2 3 28 28 H 1.08993 * 109.47243 * 300.00222 * 12 10 9 29 29 H 1.08999 * 109.46680 * 59.99915 * 12 10 9 30 30 H 1.08994 * 110.02914 * 286.31943 * 16 14 13 31 31 H 1.09000 * 110.02970 * 47.74694 * 16 14 13 32 32 H 1.08999 * 110.75657 * 199.17548 * 17 16 14 33 33 H 1.08995 * 110.90932 * 75.65559 * 17 16 14 34 34 H 1.09001 * 110.32387 * 331.14326 * 21 14 13 35 35 H 1.09003 * 110.31978 * 93.33983 * 21 14 13 36 36 H 1.09008 * 110.05673 * 182.25528 * 22 9 7 37 37 H 1.09003 * 110.02938 * 0.02562 * 23 22 9 38 38 H 1.09002 * 110.03066 * 121.42546 * 23 22 9 39 39 H 1.08999 * 110.48324 * 95.07256 * 24 23 22 40 40 H 1.09001 * 110.48667 * 217.70531 * 24 23 22 41 41 H 1.08999 * 110.75867 * 279.62780 * 25 24 23 42 42 H 1.08996 * 110.75884 * 156.25395 * 25 24 23 43 43 H 1.09003 * 110.48468 * 261.56849 * 26 22 9 44 44 H 1.08991 * 110.48610 * 24.21392 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0241 -1.2406 -0.3670 9 7 1.4056 -2.3434 0.4642 10 6 0.8254 -2.3509 1.6807 11 8 0.2921 -3.3597 2.0920 12 6 0.8403 -1.1063 2.5303 13 16 -0.0129 -1.4337 4.0973 14 6 0.1070 0.1539 4.9666 15 1 1.1503 0.4648 5.0194 16 6 -0.7127 1.2180 4.2158 17 6 -0.8383 2.4349 5.1672 18 16 -1.1916 1.6411 6.7810 19 8 -2.5970 1.5037 6.9406 20 8 -0.4222 2.2698 7.7968 21 6 -0.4634 0.0089 6.3914 22 6 1.3916 -3.5534 -0.3616 23 6 2.8319 -4.0146 -0.6454 24 6 3.0129 -3.9770 -2.1769 25 6 1.5723 -4.0970 -2.7328 26 6 0.7477 -3.2516 -1.7305 27 1 -0.4850 0.8373 0.0675 28 1 1.8715 -0.8165 2.7322 29 1 0.3330 -0.2994 2.0016 30 1 -0.1950 1.5125 3.3030 31 1 -1.7012 0.8268 3.9753 32 1 -1.6637 3.0788 4.8638 33 1 0.0959 2.9949 5.2079 34 1 -1.2319 -0.7637 6.4148 35 1 0.3339 -0.2276 7.0961 36 1 0.8389 -4.3450 0.1446 37 1 3.5413 -3.3384 -0.1684 38 1 2.9783 -5.0300 -0.2769 39 1 3.4633 -3.0333 -2.4846 40 1 3.6216 -4.8176 -2.5099 41 1 1.2410 -5.1354 -2.7265 42 1 1.5092 -3.6763 -3.7364 43 1 -0.2969 -3.5630 -1.7378 44 1 0.8321 -2.1908 -1.9662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128270910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:06 Heat of formation + Delta-G solvation = -125.794314 kcal Electronic energy + Delta-G solvation = -27035.582218 eV Core-core repulsion = 23205.518469 eV Total energy + Delta-G solvation = -3830.063749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79323 -38.36072 -38.14577 -37.46331 -37.01967 -36.07801 -33.42043 -31.05731 -30.67975 -29.48409 -28.34496 -26.60496 -26.22910 -22.70977 -21.79632 -21.41378 -21.09181 -19.85380 -18.58517 -18.05337 -17.85721 -17.63362 -17.13494 -16.86886 -16.64447 -16.21093 -15.99939 -15.87049 -15.55050 -15.08338 -14.96167 -14.63012 -14.24833 -14.18285 -13.85694 -13.56844 -13.40102 -13.31072 -13.25628 -13.13550 -13.05686 -13.00927 -12.57656 -12.53725 -12.30380 -12.18202 -12.10288 -11.89847 -11.83753 -11.80222 -11.41542 -11.36137 -11.29517 -10.94381 -10.64093 -10.31615 -9.31103 -8.63356 -8.32099 -6.21506 -0.99586 0.57999 1.41923 1.48457 1.54224 1.56487 1.62613 2.06250 2.30637 2.55614 2.91922 3.00069 3.04450 3.30785 3.44250 3.57902 3.84626 3.88720 3.90987 3.98713 4.14545 4.35471 4.42694 4.46183 4.52783 4.60673 4.69446 4.74980 4.77363 4.80235 4.81499 4.90565 4.91486 4.98362 5.06101 5.14311 5.23360 5.38754 5.47830 5.52764 5.62260 6.07247 6.66574 6.94486 7.56687 8.04541 8.68782 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.003241 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.099031 B = 8636.344762 C = 9584.160345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.345 4.345 8 H 0.087 0.913 9 N -0.444 5.444 10 C 0.505 3.495 11 O -0.630 6.630 12 C -0.098 4.098 13 S -0.230 6.230 14 C -0.066 4.066 15 H 0.128 0.872 16 C -0.127 4.127 17 C -0.560 4.560 18 S 2.415 3.585 19 O -0.972 6.972 20 O -0.966 6.966 21 C -0.563 4.563 22 C 0.120 3.880 23 C -0.121 4.121 24 C -0.108 4.108 25 C -0.112 4.112 26 C -0.116 4.116 27 H 0.275 0.725 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 4.721 3.274 6.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.473 4.473 8 H 0.105 0.895 9 N -0.163 5.163 10 C 0.295 3.705 11 O -0.519 6.519 12 C -0.248 4.248 13 S -0.002 6.002 14 C -0.196 4.196 15 H 0.146 0.854 16 C -0.167 4.167 17 C -0.694 4.694 18 S 2.600 3.400 19 O -0.969 6.969 20 O -0.964 6.964 21 C -0.693 4.693 22 C 0.016 3.984 23 C -0.160 4.160 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.154 4.154 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.179 0.821 33 H 0.182 0.818 34 H 0.161 0.839 35 H 0.185 0.815 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.562 3.691 4.557 6.400 hybrid contribution 0.899 1.362 -1.281 2.075 sum 3.461 5.053 3.276 6.946 Atomic orbital electron populations 1.70193 1.07401 1.29486 1.44016 1.26166 0.95345 1.02331 0.94348 0.85640 0.78872 0.78043 0.80095 1.19441 1.20294 1.18034 1.19367 0.97237 0.85063 1.45606 0.89528 1.43531 1.50316 1.10710 1.11705 1.19991 0.80215 0.87854 0.82486 1.90511 1.51168 1.36152 1.74023 1.23738 1.04001 1.02267 0.94801 1.87336 1.77028 1.17757 1.18099 1.23642 1.05276 0.96307 0.94374 0.85428 1.22699 1.02747 0.91475 0.99788 1.30521 1.14615 1.07527 1.16732 1.08302 0.74558 0.78734 0.78382 1.93575 1.30720 1.86004 1.86580 1.93569 1.72599 1.73994 1.56193 1.30396 1.14194 1.22492 1.02239 1.21829 0.96684 0.88089 0.91750 1.22351 0.95398 1.00380 0.97832 1.22230 0.96815 1.02054 0.93434 1.22420 0.94983 0.99580 0.98039 1.22466 0.97545 1.00964 0.94457 0.91445 0.88119 0.85202 0.88378 0.88661 0.82107 0.81750 0.83904 0.81463 0.92881 0.92227 0.91594 0.91939 0.89687 0.90788 0.90570 0.94369 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -41.06 11.47 21.66 0.25 -40.81 16 2 C 0.02 1.00 3.46 84.93 0.29 1.29 16 3 Si 0.95 33.55 29.61 68.60 2.03 35.58 16 4 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.28 -9.66 7.11 99.48 0.71 -8.95 16 6 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 7 C -0.35 -15.55 6.88 84.04 0.58 -14.97 16 8 H 0.09 3.81 7.33 -2.91 -0.02 3.79 16 9 N -0.44 -20.88 2.36 -609.35 -1.44 -22.32 16 10 C 0.51 25.11 7.19 87.66 0.63 25.74 16 11 O -0.63 -34.90 15.22 -3.09 -0.05 -34.95 16 12 C -0.10 -4.09 4.63 71.24 0.33 -3.76 16 13 S -0.23 -8.45 20.12 -56.49 -1.14 -9.58 16 14 C -0.07 -1.56 3.07 31.28 0.10 -1.47 16 15 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 16 C -0.13 -2.74 5.55 31.57 0.18 -2.57 16 17 C -0.56 -8.24 7.31 72.66 0.53 -7.71 16 18 S 2.41 46.44 6.10 -56.49 -0.34 46.09 16 19 O -0.97 -26.29 18.15 -127.47 -2.31 -28.61 16 20 O -0.97 -23.73 18.15 -127.47 -2.31 -26.04 16 21 C -0.56 -10.81 6.76 72.37 0.49 -10.32 16 22 C 0.12 5.14 3.29 45.72 0.15 5.29 16 23 C -0.12 -4.20 6.26 31.32 0.20 -4.00 16 24 C -0.11 -3.05 6.83 31.67 0.22 -2.83 16 25 C -0.11 -3.29 6.91 31.88 0.22 -3.07 16 26 C -0.12 -4.58 6.41 31.67 0.20 -4.37 16 27 H 0.28 12.12 8.31 -92.71 -0.77 11.35 16 28 H 0.10 3.91 8.10 -2.39 -0.02 3.89 16 29 H 0.13 5.52 4.44 -2.39 -0.01 5.51 16 30 H 0.10 2.25 7.74 -2.39 -0.02 2.23 16 31 H 0.09 2.23 8.12 -2.39 -0.02 2.21 16 32 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.14 2.93 7.85 -2.39 -0.02 2.91 16 35 H 0.17 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.05 2.51 6.95 -2.38 -0.02 2.49 16 37 H 0.06 2.18 7.03 -2.39 -0.02 2.17 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 2.88 6.97 -2.39 -0.02 2.86 16 Total: -1.00 -69.92 371.31 -0.20 -70.12 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 1.00 Total: 33.27 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 4.11 Total: -22.75 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -1.19 Total: -63.13 kcal Atomic # 8 Polarization: -84.93 SS G_CDS: -4.67 Total: -89.60 kcal Atomic # 14 Polarization: 33.55 SS G_CDS: 2.03 Total: 35.58 kcal Atomic # 16 Polarization: 37.99 SS G_CDS: -1.48 Total: 36.51 kcal Total: -69.92 -0.20 -70.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128270910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.676 kcal (2) G-P(sol) polarization free energy of solvation -69.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds