Wall clock time and date at job start Wed Apr 1 2020 04:08:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31411 * 1
3 3 Si 1.86797 * 119.99953 * 2 1
4 4 H 1.48500 * 109.46965 * 240.00116 * 3 2 1
5 5 H 1.48499 * 109.47230 * 359.97438 * 3 2 1
6 6 H 1.48501 * 109.47354 * 120.00363 * 3 2 1
7 7 C 1.38953 * 119.99938 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00088 * 156.93293 * 7 2 1
9 9 N 1.37095 * 119.99974 * 336.93174 * 7 2 1
10 10 C 1.34779 * 120.00004 * 307.90317 * 9 7 2
11 11 O 1.21300 * 120.00002 * 180.02562 * 10 9 7
12 12 C 1.50701 * 120.00227 * 359.97438 * 10 9 7
13 13 S 1.81398 * 109.47096 * 180.02562 * 12 10 9
14 14 C 1.81404 * 102.99776 * 180.02562 * 13 12 10
15 15 H 1.08995 * 109.64095 * 305.69975 * 14 13 12
16 16 C 1.53879 * 109.64491 * 66.12914 * 14 13 12
17 17 C 1.54974 * 106.65617 * 167.15300 * 16 14 13
18 18 S 1.83285 * 102.47916 * 317.38209 * 17 16 14
19 19 O 1.42100 * 109.35529 * 269.89991 * 18 17 16
20 20 O 1.42104 * 109.47479 * 136.73787 * 18 17 16
21 21 C 1.54159 * 109.64393 * 185.26941 * 14 13 12
22 22 C 1.46498 * 119.99933 * 127.90268 * 9 7 2
23 23 C 1.53880 * 110.03319 * 60.83939 * 22 9 7
24 24 C 1.54262 * 106.59689 * 240.71321 * 23 22 9
25 25 C 1.54883 * 104.20004 * 336.38842 * 24 23 22
26 26 C 1.54264 * 110.03391 * 303.67365 * 22 9 7
27 27 H 0.96996 * 120.00229 * 355.39166 * 1 2 3
28 28 H 1.08993 * 109.47243 * 300.00222 * 12 10 9
29 29 H 1.08999 * 109.46680 * 59.99915 * 12 10 9
30 30 H 1.08994 * 110.02914 * 286.31943 * 16 14 13
31 31 H 1.09000 * 110.02970 * 47.74694 * 16 14 13
32 32 H 1.08999 * 110.75657 * 199.17548 * 17 16 14
33 33 H 1.08995 * 110.90932 * 75.65559 * 17 16 14
34 34 H 1.09001 * 110.32387 * 331.14326 * 21 14 13
35 35 H 1.09003 * 110.31978 * 93.33983 * 21 14 13
36 36 H 1.09008 * 110.05673 * 182.25528 * 22 9 7
37 37 H 1.09003 * 110.02938 * 0.02562 * 23 22 9
38 38 H 1.09002 * 110.03066 * 121.42546 * 23 22 9
39 39 H 1.08999 * 110.48324 * 95.07256 * 24 23 22
40 40 H 1.09001 * 110.48667 * 217.70531 * 24 23 22
41 41 H 1.08999 * 110.75867 * 279.62780 * 25 24 23
42 42 H 1.08996 * 110.75884 * 156.25395 * 25 24 23
43 43 H 1.09003 * 110.48468 * 261.56849 * 26 22 9
44 44 H 1.08991 * 110.48610 * 24.21392 * 26 22 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 3.1018 1.6964 -1.2125
5 1 1.2831 2.7464 -0.0006
6 1 3.1019 1.6964 1.2124
7 6 2.0089 -1.2034 -0.0005
8 1 3.0241 -1.2406 -0.3670
9 7 1.4056 -2.3434 0.4642
10 6 0.8254 -2.3509 1.6807
11 8 0.2921 -3.3597 2.0920
12 6 0.8403 -1.1063 2.5303
13 16 -0.0129 -1.4337 4.0973
14 6 0.1070 0.1539 4.9666
15 1 1.1503 0.4648 5.0194
16 6 -0.7127 1.2180 4.2158
17 6 -0.8383 2.4349 5.1672
18 16 -1.1916 1.6411 6.7810
19 8 -2.5970 1.5037 6.9406
20 8 -0.4222 2.2698 7.7968
21 6 -0.4634 0.0089 6.3914
22 6 1.3916 -3.5534 -0.3616
23 6 2.8319 -4.0146 -0.6454
24 6 3.0129 -3.9770 -2.1769
25 6 1.5723 -4.0970 -2.7328
26 6 0.7477 -3.2516 -1.7305
27 1 -0.4850 0.8373 0.0675
28 1 1.8715 -0.8165 2.7322
29 1 0.3330 -0.2994 2.0016
30 1 -0.1950 1.5125 3.3030
31 1 -1.7012 0.8268 3.9753
32 1 -1.6637 3.0788 4.8638
33 1 0.0959 2.9949 5.2079
34 1 -1.2319 -0.7637 6.4148
35 1 0.3339 -0.2276 7.0961
36 1 0.8389 -4.3450 0.1446
37 1 3.5413 -3.3384 -0.1684
38 1 2.9783 -5.0300 -0.2769
39 1 3.4633 -3.0333 -2.4846
40 1 3.6216 -4.8176 -2.5099
41 1 1.2410 -5.1354 -2.7265
42 1 1.5092 -3.6763 -3.7364
43 1 -0.2969 -3.5630 -1.7378
44 1 0.8321 -2.1908 -1.9662
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000128270910.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:08:06
Heat of formation + Delta-G solvation = -125.794314 kcal
Electronic energy + Delta-G solvation = -27035.582218 eV
Core-core repulsion = 23205.518469 eV
Total energy + Delta-G solvation = -3830.063749 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.106 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.79323 -38.36072 -38.14577 -37.46331 -37.01967 -36.07801 -33.42043 -31.05731
-30.67975 -29.48409 -28.34496 -26.60496 -26.22910 -22.70977 -21.79632 -21.41378
-21.09181 -19.85380 -18.58517 -18.05337 -17.85721 -17.63362 -17.13494 -16.86886
-16.64447 -16.21093 -15.99939 -15.87049 -15.55050 -15.08338 -14.96167 -14.63012
-14.24833 -14.18285 -13.85694 -13.56844 -13.40102 -13.31072 -13.25628 -13.13550
-13.05686 -13.00927 -12.57656 -12.53725 -12.30380 -12.18202 -12.10288 -11.89847
-11.83753 -11.80222 -11.41542 -11.36137 -11.29517 -10.94381 -10.64093 -10.31615
-9.31103 -8.63356 -8.32099 -6.21506 -0.99586 0.57999 1.41923 1.48457
1.54224 1.56487 1.62613 2.06250 2.30637 2.55614 2.91922 3.00069
3.04450 3.30785 3.44250 3.57902 3.84626 3.88720 3.90987 3.98713
4.14545 4.35471 4.42694 4.46183 4.52783 4.60673 4.69446 4.74980
4.77363 4.80235 4.81499 4.90565 4.91486 4.98362 5.06101 5.14311
5.23360 5.38754 5.47830 5.52764 5.62260 6.07247 6.66574 6.94486
7.56687 8.04541 8.68782
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.017852 B = 0.003241 C = 0.002921
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1568.099031 B = 8636.344762 C = 9584.160345
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.875 5.875
2 C 0.023 3.977
3 Si 0.951 3.049
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.256 1.256
7 C -0.345 4.345
8 H 0.087 0.913
9 N -0.444 5.444
10 C 0.505 3.495
11 O -0.630 6.630
12 C -0.098 4.098
13 S -0.230 6.230
14 C -0.066 4.066
15 H 0.128 0.872
16 C -0.127 4.127
17 C -0.560 4.560
18 S 2.415 3.585
19 O -0.972 6.972
20 O -0.966 6.966
21 C -0.563 4.563
22 C 0.120 3.880
23 C -0.121 4.121
24 C -0.108 4.108
25 C -0.112 4.112
26 C -0.116 4.116
27 H 0.275 0.725
28 H 0.101 0.899
29 H 0.131 0.869
30 H 0.098 0.902
31 H 0.095 0.905
32 H 0.161 0.839
33 H 0.165 0.835
34 H 0.143 0.857
35 H 0.167 0.833
36 H 0.053 0.947
37 H 0.059 0.941
38 H 0.065 0.935
39 H 0.062 0.938
40 H 0.085 0.915
41 H 0.073 0.927
42 H 0.076 0.924
43 H 0.037 0.963
44 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.876 4.721 3.274 6.930
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.511 5.511
2 C -0.182 4.182
3 Si 0.773 3.227
4 H -0.194 1.194
5 H -0.203 1.203
6 H -0.180 1.180
7 C -0.473 4.473
8 H 0.105 0.895
9 N -0.163 5.163
10 C 0.295 3.705
11 O -0.519 6.519
12 C -0.248 4.248
13 S -0.002 6.002
14 C -0.196 4.196
15 H 0.146 0.854
16 C -0.167 4.167
17 C -0.694 4.694
18 S 2.600 3.400
19 O -0.969 6.969
20 O -0.964 6.964
21 C -0.693 4.693
22 C 0.016 3.984
23 C -0.160 4.160
24 C -0.145 4.145
25 C -0.150 4.150
26 C -0.154 4.154
27 H 0.086 0.914
28 H 0.119 0.881
29 H 0.148 0.852
30 H 0.116 0.884
31 H 0.113 0.887
32 H 0.179 0.821
33 H 0.182 0.818
34 H 0.161 0.839
35 H 0.185 0.815
36 H 0.071 0.929
37 H 0.078 0.922
38 H 0.084 0.916
39 H 0.081 0.919
40 H 0.103 0.897
41 H 0.092 0.908
42 H 0.094 0.906
43 H 0.056 0.944
44 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 2.562 3.691 4.557 6.400
hybrid contribution 0.899 1.362 -1.281 2.075
sum 3.461 5.053 3.276 6.946
Atomic orbital electron populations
1.70193 1.07401 1.29486 1.44016 1.26166 0.95345 1.02331 0.94348
0.85640 0.78872 0.78043 0.80095 1.19441 1.20294 1.18034 1.19367
0.97237 0.85063 1.45606 0.89528 1.43531 1.50316 1.10710 1.11705
1.19991 0.80215 0.87854 0.82486 1.90511 1.51168 1.36152 1.74023
1.23738 1.04001 1.02267 0.94801 1.87336 1.77028 1.17757 1.18099
1.23642 1.05276 0.96307 0.94374 0.85428 1.22699 1.02747 0.91475
0.99788 1.30521 1.14615 1.07527 1.16732 1.08302 0.74558 0.78734
0.78382 1.93575 1.30720 1.86004 1.86580 1.93569 1.72599 1.73994
1.56193 1.30396 1.14194 1.22492 1.02239 1.21829 0.96684 0.88089
0.91750 1.22351 0.95398 1.00380 0.97832 1.22230 0.96815 1.02054
0.93434 1.22420 0.94983 0.99580 0.98039 1.22466 0.97545 1.00964
0.94457 0.91445 0.88119 0.85202 0.88378 0.88661 0.82107 0.81750
0.83904 0.81463 0.92881 0.92227 0.91594 0.91939 0.89687 0.90788
0.90570 0.94369 0.91756
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -41.06 11.47 21.66 0.25 -40.81 16
2 C 0.02 1.00 3.46 84.93 0.29 1.29 16
3 Si 0.95 33.55 29.61 68.60 2.03 35.58 16
4 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16
5 H -0.28 -9.66 7.11 99.48 0.71 -8.95 16
6 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16
7 C -0.35 -15.55 6.88 84.04 0.58 -14.97 16
8 H 0.09 3.81 7.33 -2.91 -0.02 3.79 16
9 N -0.44 -20.88 2.36 -609.35 -1.44 -22.32 16
10 C 0.51 25.11 7.19 87.66 0.63 25.74 16
11 O -0.63 -34.90 15.22 -3.09 -0.05 -34.95 16
12 C -0.10 -4.09 4.63 71.24 0.33 -3.76 16
13 S -0.23 -8.45 20.12 -56.49 -1.14 -9.58 16
14 C -0.07 -1.56 3.07 31.28 0.10 -1.47 16
15 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16
16 C -0.13 -2.74 5.55 31.57 0.18 -2.57 16
17 C -0.56 -8.24 7.31 72.66 0.53 -7.71 16
18 S 2.41 46.44 6.10 -56.49 -0.34 46.09 16
19 O -0.97 -26.29 18.15 -127.47 -2.31 -28.61 16
20 O -0.97 -23.73 18.15 -127.47 -2.31 -26.04 16
21 C -0.56 -10.81 6.76 72.37 0.49 -10.32 16
22 C 0.12 5.14 3.29 45.72 0.15 5.29 16
23 C -0.12 -4.20 6.26 31.32 0.20 -4.00 16
24 C -0.11 -3.05 6.83 31.67 0.22 -2.83 16
25 C -0.11 -3.29 6.91 31.88 0.22 -3.07 16
26 C -0.12 -4.58 6.41 31.67 0.20 -4.37 16
27 H 0.28 12.12 8.31 -92.71 -0.77 11.35 16
28 H 0.10 3.91 8.10 -2.39 -0.02 3.89 16
29 H 0.13 5.52 4.44 -2.39 -0.01 5.51 16
30 H 0.10 2.25 7.74 -2.39 -0.02 2.23 16
31 H 0.09 2.23 8.12 -2.39 -0.02 2.21 16
32 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16
33 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16
34 H 0.14 2.93 7.85 -2.39 -0.02 2.91 16
35 H 0.17 2.44 8.14 -2.39 -0.02 2.42 16
36 H 0.05 2.51 6.95 -2.38 -0.02 2.49 16
37 H 0.06 2.18 7.03 -2.39 -0.02 2.17 16
38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16
39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16
43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
44 H 0.06 2.88 6.97 -2.39 -0.02 2.86 16
Total: -1.00 -69.92 371.31 -0.20 -70.12
By element:
Atomic # 1 Polarization: 32.27 SS G_CDS: 1.00 Total: 33.27 kcal
Atomic # 6 Polarization: -26.86 SS G_CDS: 4.11 Total: -22.75 kcal
Atomic # 7 Polarization: -61.94 SS G_CDS: -1.19 Total: -63.13 kcal
Atomic # 8 Polarization: -84.93 SS G_CDS: -4.67 Total: -89.60 kcal
Atomic # 14 Polarization: 33.55 SS G_CDS: 2.03 Total: 35.58 kcal
Atomic # 16 Polarization: 37.99 SS G_CDS: -1.48 Total: 36.51 kcal
Total: -69.92 -0.20 -70.12 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000128270910.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.676 kcal
(2) G-P(sol) polarization free energy of solvation -69.915 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.118 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.794 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds