Wall clock time and date at job start Wed Apr 1 2020 04:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46875 * 2 1 4 4 C 1.52996 * 109.47055 * 119.99491 * 2 1 3 5 5 C 1.53006 * 109.47102 * 185.00210 * 4 2 1 6 6 H 1.08993 * 109.46955 * 55.00306 * 5 4 2 7 7 O 1.42906 * 109.46752 * 294.99887 * 5 4 2 8 8 C 1.50698 * 109.47184 * 175.00464 * 5 4 2 9 9 C 1.33394 * 125.19897 * 264.99837 * 8 5 4 10 10 C 1.38422 * 114.91680 * 179.97438 * 9 8 5 11 11 C 1.33389 * 114.92624 * 0.02562 * 10 9 8 12 12 S 1.75883 * 125.20518 * 84.69016 * 8 5 4 13 13 N 1.46494 * 109.47264 * 239.99620 * 2 1 3 14 14 S 1.65604 * 119.99898 * 94.99973 * 13 2 1 15 15 O 1.42105 * 104.27684 * 181.07343 * 14 13 2 16 16 O 1.42105 * 104.27756 * 308.92984 * 14 13 2 17 17 C 1.81399 * 104.45140 * 65.00292 * 14 13 2 18 18 C 1.52997 * 109.46974 * 180.02562 * 17 14 13 19 19 C 1.53010 * 109.46609 * 179.97438 * 18 17 14 20 20 C 1.50700 * 109.46489 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00784 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99501 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47066 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47260 * 120.00195 * 24 22 20 27 27 H 1.48500 * 109.47417 * 240.00542 * 24 22 20 28 28 H 1.09003 * 109.47214 * 59.99777 * 1 2 3 29 29 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47162 * 300.00398 * 1 2 3 31 31 H 1.09000 * 109.47145 * 64.99973 * 4 2 1 32 32 H 1.09007 * 109.47521 * 304.99979 * 4 2 1 33 33 H 0.96696 * 113.99911 * 300.00276 * 7 5 4 34 34 H 1.07994 * 122.54208 * 359.97438 * 9 8 5 35 35 H 1.08006 * 122.53568 * 180.02562 * 10 9 8 36 36 H 1.08002 * 125.20651 * 179.97438 * 11 10 9 37 37 H 0.96998 * 120.00485 * 274.99991 * 13 2 1 38 38 H 1.09001 * 109.46452 * 300.00129 * 17 14 13 39 39 H 1.08998 * 109.47174 * 59.99544 * 17 14 13 40 40 H 1.09002 * 109.46996 * 299.99181 * 18 17 14 41 41 H 1.08999 * 109.47457 * 60.00190 * 18 17 14 42 42 H 1.09002 * 109.46780 * 299.99323 * 19 18 17 43 43 H 1.08999 * 109.47048 * 59.99948 * 19 18 17 44 44 H 0.96993 * 119.99780 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 1 3.8570 0.4359 1.2678 7 8 4.1392 -1.3164 0.2103 8 6 4.0570 -1.2156 2.6044 9 6 4.3086 -0.5353 3.7239 10 6 4.7527 -1.3038 4.7860 11 6 4.8624 -2.6081 4.5291 12 16 4.3803 -2.9244 2.8674 13 7 2.0183 -0.6907 -1.1961 14 16 2.4122 0.1771 -2.5505 15 8 2.8123 -0.8077 -3.4936 16 8 1.2751 0.9965 -2.7846 17 6 3.8313 1.1872 -2.0441 18 6 4.2933 2.0451 -3.2237 19 6 5.4900 2.8976 -2.7963 20 6 5.9454 3.7422 -3.9583 21 1 5.4331 3.6772 -4.9068 22 6 7.0164 4.5979 -3.8105 23 7 7.6407 4.6767 -2.6556 24 14 7.5815 5.6444 -5.2510 25 1 6.7196 5.3716 -6.4292 26 1 7.4827 7.0810 -4.8880 27 1 8.9909 5.3129 -5.5808 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7516 -1.7714 1.2057 32 1 1.6053 -0.2615 2.1371 33 1 3.9205 -2.2581 0.1873 34 1 4.1758 0.5340 3.7961 35 1 4.9923 -0.8794 5.7499 36 1 5.1925 -3.3561 5.2347 37 1 2.1110 -1.6562 -1.1948 38 1 3.5399 1.8342 -1.2167 39 1 4.6459 0.5361 -1.7268 40 1 4.5847 1.3984 -4.0513 41 1 3.4786 2.6962 -3.5405 42 1 5.1982 3.5443 -1.9689 43 1 6.3048 2.2468 -2.4791 44 1 8.3938 5.2790 -2.5516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158192986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:23 Heat of formation + Delta-G solvation = -136.025693 kcal Electronic energy + Delta-G solvation = -26495.048689 eV Core-core repulsion = 22664.541274 eV Total energy + Delta-G solvation = -3830.507415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84780 -38.29341 -38.02573 -36.99294 -36.55143 -36.43104 -34.14318 -32.51541 -30.83091 -29.62748 -28.68136 -25.60129 -25.42079 -23.33312 -22.47235 -22.26012 -20.37954 -20.26493 -18.86390 -18.66683 -18.47496 -17.48745 -17.09531 -16.78827 -16.59664 -16.46850 -16.28703 -15.73420 -15.31350 -14.99620 -14.63812 -14.48304 -14.10788 -14.03924 -13.71127 -13.56405 -13.49193 -13.15935 -13.14055 -13.04368 -13.02189 -12.96219 -12.77279 -12.65545 -12.59405 -12.45087 -12.31846 -12.13600 -11.82348 -11.70939 -11.60820 -11.39965 -11.29564 -10.99074 -10.57531 -10.24392 -9.55630 -9.35749 -8.22148 -6.33132 -0.62181 0.06510 0.69649 1.07412 1.39421 1.39929 1.53460 1.83512 1.88681 2.40061 2.82893 3.11099 3.31645 3.40424 3.54173 3.82253 3.91814 3.97766 4.03227 4.19205 4.25569 4.42120 4.44362 4.49646 4.59632 4.65951 4.70605 4.71112 4.91497 5.00784 5.03347 5.06768 5.09111 5.21636 5.36548 5.39727 5.45984 5.46734 5.57543 5.64439 5.80372 6.20640 6.27391 6.71412 6.82579 7.36044 8.89486 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010144 B = 0.003041 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.709089 B = 9204.346746 C =11136.493462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.148 3.852 3 H 0.086 0.914 4 C -0.140 4.140 5 C 0.173 3.827 6 H 0.113 0.887 7 O -0.558 6.558 8 C -0.217 4.217 9 C -0.144 4.144 10 C -0.145 4.145 11 C -0.220 4.220 12 S 0.103 5.897 13 N -1.091 6.091 14 S 2.631 3.369 15 O -0.998 6.998 16 O -0.991 6.991 17 C -0.606 4.606 18 C -0.105 4.105 19 C 0.034 3.966 20 C -0.552 4.552 21 H 0.059 0.941 22 C 0.003 3.997 23 N -0.929 5.929 24 Si 0.963 3.037 25 H -0.264 1.264 26 H -0.275 1.275 27 H -0.277 1.277 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.380 0.620 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.182 0.818 37 H 0.424 0.576 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.003 0.997 43 H -0.001 1.001 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 -16.715 18.039 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.042 3.958 3 H 0.104 0.896 4 C -0.179 4.179 5 C 0.112 3.888 6 H 0.130 0.870 7 O -0.364 6.364 8 C -0.335 4.335 9 C -0.175 4.175 10 C -0.175 4.175 11 C -0.355 4.355 12 S 0.367 5.633 13 N -0.852 5.852 14 S 2.726 3.274 15 O -0.988 6.988 16 O -0.981 6.981 17 C -0.736 4.736 18 C -0.145 4.145 19 C -0.004 4.004 20 C -0.590 4.590 21 H 0.077 0.923 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.787 3.213 25 H -0.188 1.188 26 H -0.201 1.201 27 H -0.202 1.202 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.229 0.771 34 H 0.167 0.833 35 H 0.173 0.827 36 H 0.199 0.801 37 H 0.261 0.739 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.022 0.978 43 H 0.018 0.982 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.620 -17.236 16.279 26.858 hybrid contribution 1.155 1.221 1.052 1.983 sum -11.465 -16.015 17.331 26.235 Atomic orbital electron populations 1.22322 0.94300 1.03338 1.03066 1.20900 0.94826 0.96118 0.84001 0.89644 1.22599 0.93903 1.03301 0.98117 1.20506 0.92195 0.96317 0.79786 0.86980 1.86690 1.76061 1.26160 1.47488 1.25581 1.09541 0.97280 1.01088 1.20373 1.02495 1.02177 0.92423 1.20449 1.02690 0.93145 1.01209 1.25947 1.09392 1.00841 0.99315 1.84096 1.64924 1.05641 1.08687 1.55232 1.81416 1.19408 1.29187 1.04107 0.75603 0.74239 0.73453 1.93516 1.84937 1.58985 1.61364 1.93533 1.48257 1.71619 1.84658 1.30472 1.20270 1.14002 1.08870 1.21298 1.00069 0.97859 0.95237 1.18925 0.92178 0.93642 0.95643 1.21776 1.15058 1.23498 0.98647 0.92268 1.25938 0.96489 0.98383 0.98747 1.70084 1.22331 1.38856 1.25637 0.85430 0.78215 0.78339 0.79281 1.18820 1.20092 1.20237 0.93120 0.91101 0.89712 0.88984 0.87447 0.77094 0.83315 0.82697 0.80079 0.73907 0.84175 0.83917 0.92047 0.91640 0.97839 0.98246 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.52 71.98 0.69 -1.82 16 2 C 0.15 2.23 2.68 44.99 0.12 2.35 16 3 H 0.09 1.31 7.15 -2.38 -0.02 1.30 16 4 C -0.14 -1.46 4.56 30.60 0.14 -1.32 16 5 C 0.17 2.58 3.40 29.85 0.10 2.68 16 6 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 7 O -0.56 -9.69 11.33 -148.98 -1.69 -11.38 16 8 C -0.22 -3.37 5.52 24.59 0.14 -3.23 16 9 C -0.14 -2.23 10.05 21.22 0.21 -2.02 16 10 C -0.14 -2.03 10.18 21.22 0.22 -1.81 16 11 C -0.22 -2.91 11.23 66.72 0.75 -2.16 16 12 S 0.10 1.43 22.54 -56.49 -1.27 0.16 16 13 N -1.09 -20.40 3.89 -169.40 -0.66 -21.06 16 14 S 2.63 76.64 5.38 -56.49 -0.30 76.34 16 15 O -1.00 -35.51 18.08 -127.65 -2.31 -37.82 16 16 O -0.99 -34.14 17.11 -127.65 -2.18 -36.33 16 17 C -0.61 -19.16 5.96 71.98 0.43 -18.74 16 18 C -0.11 -4.46 5.16 30.60 0.16 -4.30 16 19 C 0.03 1.82 4.97 29.85 0.15 1.97 16 20 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 21 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 22 C 0.00 0.15 5.46 84.65 0.46 0.61 16 23 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 24 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 25 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H 0.05 1.03 7.42 -2.39 -0.02 1.01 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.83 8.14 -2.38 -0.02 0.82 16 33 H 0.38 4.48 8.33 -74.06 -0.62 3.86 16 34 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.42 6.07 8.34 -96.75 -0.81 5.27 16 38 H 0.14 3.82 7.44 -2.39 -0.02 3.81 16 39 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 40 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -78.28 390.59 -2.73 -81.00 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -0.41 Total: 17.93 kcal Atomic # 6 Polarization: -63.39 SS G_CDS: 3.79 Total: -59.60 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -0.37 Total: -77.17 kcal Atomic # 8 Polarization: -79.35 SS G_CDS: -6.18 Total: -85.53 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 78.07 SS G_CDS: -1.58 Total: 76.50 kcal Total: -78.28 -2.73 -81.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158192986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.022 kcal (2) G-P(sol) polarization free energy of solvation -78.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds