Wall clock time and date at job start Wed Apr 1 2020 04:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47130 * 2 1 4 4 C 1.53001 * 109.46897 * 240.00200 * 2 1 3 5 5 C 1.53003 * 109.47152 * 175.00309 * 4 2 1 6 6 H 1.08994 * 109.47157 * 54.99522 * 5 4 2 7 7 O 1.42900 * 109.46452 * 294.99717 * 5 4 2 8 8 C 1.50697 * 109.47081 * 174.99970 * 5 4 2 9 9 C 1.33385 * 125.20045 * 264.99343 * 8 5 4 10 10 C 1.38424 * 114.92103 * 180.02562 * 9 8 5 11 11 C 1.33394 * 114.92041 * 359.97438 * 10 9 8 12 12 S 1.75884 * 125.20291 * 85.03769 * 8 5 4 13 13 N 1.46497 * 109.47238 * 120.00040 * 2 1 3 14 14 S 1.65605 * 120.00150 * 264.99838 * 13 2 1 15 15 O 1.42094 * 104.27728 * 181.07395 * 14 13 2 16 16 O 1.42106 * 104.27387 * 308.92838 * 14 13 2 17 17 C 1.81394 * 104.44877 * 64.99898 * 14 13 2 18 18 C 1.52999 * 109.47237 * 179.97438 * 17 14 13 19 19 C 1.53002 * 109.47050 * 180.02562 * 18 17 14 20 20 C 1.50702 * 109.46700 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00639 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99752 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99935 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47214 * 59.99355 * 24 22 20 26 26 H 1.48498 * 109.47391 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46711 * 299.99482 * 24 22 20 28 28 H 1.08992 * 109.47158 * 60.00048 * 1 2 3 29 29 H 1.08991 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46945 * 299.99885 * 1 2 3 31 31 H 1.08994 * 109.47512 * 54.99915 * 4 2 1 32 32 H 1.09002 * 109.46711 * 294.99531 * 4 2 1 33 33 H 0.96703 * 114.00364 * 300.00036 * 7 5 4 34 34 H 1.07999 * 122.54451 * 0.02562 * 9 8 5 35 35 H 1.08001 * 122.54383 * 180.02562 * 10 9 8 36 36 H 1.07995 * 125.20296 * 179.73420 * 11 10 9 37 37 H 0.97000 * 120.00314 * 85.00180 * 13 2 1 38 38 H 1.09006 * 109.47455 * 300.00590 * 17 14 13 39 39 H 1.09006 * 109.47195 * 60.00087 * 17 14 13 40 40 H 1.08993 * 109.47179 * 300.00326 * 18 17 14 41 41 H 1.08998 * 109.46829 * 60.00251 * 18 17 14 42 42 H 1.09003 * 109.47228 * 300.00086 * 19 18 17 43 43 H 1.08998 * 109.47132 * 60.00397 * 19 18 17 44 44 H 0.97009 * 119.99797 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6134 -1.3138 6 1 3.9954 -0.9923 -0.3869 7 8 3.9385 0.7549 -1.4881 8 6 4.0772 -1.4259 -2.4748 9 6 4.5165 -2.6831 -2.3991 10 6 4.9399 -3.2264 -3.5998 11 6 4.8439 -2.4105 -4.6508 12 16 4.1886 -0.8613 -4.1369 13 7 2.0184 -0.6906 1.1961 14 16 2.4123 0.1772 2.5505 15 8 2.8608 -0.8029 3.4765 16 8 3.2876 1.1906 2.0750 17 6 0.8409 0.8989 3.0985 18 6 1.0753 1.7340 4.3589 19 6 -0.2502 2.3422 4.8215 20 6 -0.0192 3.1653 6.0626 21 1 0.9736 3.2461 6.4800 22 6 -1.0755 3.8143 6.6659 23 7 -2.2846 3.7155 6.1579 24 14 -0.7891 4.8351 8.2039 25 1 0.1760 5.9229 7.9034 26 1 -2.0756 5.4253 8.6530 27 1 -0.2399 3.9687 9.2777 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2618 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.5895 1.1582 -2.2948 34 1 4.5401 -3.2354 -1.4713 35 1 5.3184 -4.2347 -3.6799 36 1 5.1299 -2.6610 -5.6616 37 1 2.1111 -1.6562 1.1949 38 1 0.4387 1.5352 2.3101 39 1 0.1317 0.1009 3.3185 40 1 1.4772 1.0973 5.1470 41 1 1.7846 2.5319 4.1393 42 1 -0.6525 2.9788 4.0334 43 1 -0.9592 1.5440 5.0412 44 1 -3.0278 4.1724 6.5822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158193141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:27 Heat of formation + Delta-G solvation = -110.164186 kcal Electronic energy + Delta-G solvation = -25956.336065 eV Core-core repulsion = 22126.950089 eV Total energy + Delta-G solvation = -3829.385975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.22423 -37.63820 -36.82540 -36.08538 -35.67623 -34.66743 -32.19178 -31.67741 -30.29368 -28.31120 -27.68231 -24.92965 -23.69737 -22.79431 -21.53256 -20.66255 -19.82568 -19.28658 -18.27375 -17.60471 -16.68179 -16.46013 -16.17222 -15.87155 -15.64939 -15.37849 -14.96308 -14.49311 -14.42178 -14.22372 -13.83865 -13.40565 -13.16259 -13.05060 -12.76709 -12.52335 -12.32174 -12.21798 -12.16244 -11.89600 -11.88316 -11.78951 -11.71312 -11.50037 -11.26314 -11.15983 -11.04884 -10.88838 -10.83701 -10.55918 -10.40389 -9.93395 -9.78604 -9.33367 -9.10693 -9.01479 -8.86090 -8.39736 -6.05024 -4.07943 0.50595 0.57428 1.19145 1.57506 2.34068 2.86093 3.32898 3.36569 3.40000 3.96041 4.01920 4.10181 4.39725 4.43190 4.54824 4.63536 4.70409 4.72074 5.04677 5.06421 5.14565 5.15981 5.16873 5.19070 5.31210 5.34769 5.42433 5.54506 5.59529 5.73380 5.85821 5.87559 5.99192 6.05441 6.08149 6.28582 6.46751 6.87787 6.91751 7.25581 7.57363 7.67683 7.92959 8.33710 8.98021 9.56624 11.06088 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.002038 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.763356 B =13735.150627 C =13950.562429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.146 3.854 3 H 0.103 0.897 4 C -0.148 4.148 5 C 0.176 3.824 6 H 0.120 0.880 7 O -0.537 6.537 8 C -0.207 4.207 9 C -0.134 4.134 10 C -0.132 4.132 11 C -0.214 4.214 12 S 0.104 5.896 13 N -1.120 6.120 14 S 2.597 3.403 15 O -0.966 6.966 16 O -0.952 6.952 17 C -0.611 4.611 18 C -0.106 4.106 19 C 0.031 3.969 20 C -0.526 4.526 21 H 0.058 0.942 22 C 0.057 3.943 23 N -0.896 5.896 24 Si 0.895 3.105 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.369 0.631 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.412 0.588 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.121 -14.078 -24.468 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.039 3.961 3 H 0.121 0.879 4 C -0.188 4.188 5 C 0.114 3.886 6 H 0.137 0.863 7 O -0.341 6.341 8 C -0.325 4.325 9 C -0.165 4.165 10 C -0.163 4.163 11 C -0.350 4.350 12 S 0.367 5.633 13 N -0.878 5.878 14 S 2.692 3.308 15 O -0.956 6.956 16 O -0.942 6.942 17 C -0.743 4.743 18 C -0.145 4.145 19 C -0.007 4.007 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.144 4.144 23 N -0.535 5.535 24 Si 0.722 3.278 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.201 1.201 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.215 0.785 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.246 0.754 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.784 -12.514 -24.290 29.023 hybrid contribution -0.632 -1.248 0.766 1.595 sum 9.153 -13.763 -23.524 28.750 Atomic orbital electron populations 1.22486 0.94931 1.03163 1.03439 1.20798 0.93783 0.97457 0.84085 0.87927 1.22590 0.95100 1.02647 0.98421 1.20449 0.93355 0.80780 0.94005 0.86270 1.86810 1.77000 1.23683 1.46641 1.25593 1.08516 0.99826 0.98548 1.20126 1.01874 0.94726 0.99727 1.20204 1.02935 1.01379 0.91780 1.25628 1.09059 0.96904 1.03395 1.84157 1.62881 1.15517 1.00753 1.55855 1.84310 1.19529 1.28060 1.05431 0.77636 0.74635 0.73075 1.93574 1.80146 1.59278 1.62628 1.93611 1.61394 1.60111 1.79106 1.30668 1.21213 1.12198 1.10218 1.21498 1.03596 0.97721 0.91709 1.19052 0.89818 0.95615 0.96200 1.21223 0.94573 1.30049 1.10634 0.92419 1.25021 0.95140 0.96620 0.97613 1.69951 0.99492 1.43566 1.40442 0.86611 0.77379 0.80525 0.83246 1.20110 1.21264 1.20131 0.91169 0.91707 0.91178 0.89892 0.89752 0.78453 0.84052 0.84161 0.81841 0.75422 0.85420 0.85341 0.91644 0.91549 0.96141 0.96165 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.15 1.29 2.76 -67.93 -0.19 1.10 16 3 H 0.10 1.04 7.03 -51.93 -0.37 0.68 16 4 C -0.15 -1.04 4.47 -26.73 -0.12 -1.16 16 5 C 0.18 1.58 3.35 -27.88 -0.09 1.48 16 6 H 0.12 1.20 7.61 -51.93 -0.40 0.80 16 7 O -0.54 -5.70 12.69 -35.23 -0.45 -6.15 16 8 C -0.21 -1.72 5.52 -36.01 -0.20 -1.92 16 9 C -0.13 -1.05 10.05 -41.21 -0.41 -1.46 16 10 C -0.13 -0.92 10.18 -41.21 -0.42 -1.34 16 11 C -0.21 -1.44 11.23 29.04 0.33 -1.11 16 12 S 0.10 0.74 22.53 -107.50 -2.42 -1.68 16 13 N -1.12 -11.24 4.73 -4.89 -0.02 -11.26 16 14 S 2.60 37.92 5.44 -107.50 -0.58 37.34 16 15 O -0.97 -16.95 18.08 -57.54 -1.04 -17.99 16 16 O -0.95 -16.93 17.39 -57.54 -1.00 -17.93 16 17 C -0.61 -9.31 5.22 37.16 0.19 -9.12 16 18 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 19 C 0.03 0.79 4.97 -27.88 -0.14 0.66 16 20 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 21 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 24 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.62 5.78 -51.93 -0.30 0.32 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.37 2.65 8.39 45.56 0.38 3.03 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.41 3.23 8.80 -34.47 -0.30 2.93 16 38 H 0.13 1.72 6.77 -51.92 -0.35 1.37 16 39 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 389.85 15.07 5.88 5.88 Total: -1.00 -36.60 389.85 -11.12 -47.72 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.95 Total: 3.12 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: -1.25 Total: -29.86 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.71 Total: -37.07 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -2.49 Total: -42.08 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 38.67 SS G_CDS: -3.01 Total: 35.66 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.60 -11.12 -47.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158193141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.445 kcal (2) G-P(sol) polarization free energy of solvation -36.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds