Wall clock time and date at job start Wed Apr 1 2020 04:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47130 * 2 1 4 4 C 1.53001 * 109.46897 * 240.00200 * 2 1 3 5 5 C 1.53003 * 109.47152 * 175.00309 * 4 2 1 6 6 H 1.08994 * 109.47157 * 54.99522 * 5 4 2 7 7 O 1.42900 * 109.46452 * 294.99717 * 5 4 2 8 8 C 1.50697 * 109.47081 * 174.99970 * 5 4 2 9 9 C 1.33385 * 125.20045 * 264.99343 * 8 5 4 10 10 C 1.38424 * 114.92103 * 180.02562 * 9 8 5 11 11 C 1.33394 * 114.92041 * 359.97438 * 10 9 8 12 12 S 1.75884 * 125.20291 * 85.03769 * 8 5 4 13 13 N 1.46497 * 109.47238 * 120.00040 * 2 1 3 14 14 S 1.65605 * 120.00150 * 264.99838 * 13 2 1 15 15 O 1.42094 * 104.27728 * 181.07395 * 14 13 2 16 16 O 1.42106 * 104.27387 * 308.92838 * 14 13 2 17 17 C 1.81394 * 104.44877 * 64.99898 * 14 13 2 18 18 C 1.52999 * 109.47237 * 179.97438 * 17 14 13 19 19 C 1.53002 * 109.47050 * 180.02562 * 18 17 14 20 20 C 1.50702 * 109.46700 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00639 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99752 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99935 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47214 * 59.99355 * 24 22 20 26 26 H 1.48498 * 109.47391 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46711 * 299.99482 * 24 22 20 28 28 H 1.08992 * 109.47158 * 60.00048 * 1 2 3 29 29 H 1.08991 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46945 * 299.99885 * 1 2 3 31 31 H 1.08994 * 109.47512 * 54.99915 * 4 2 1 32 32 H 1.09002 * 109.46711 * 294.99531 * 4 2 1 33 33 H 0.96703 * 114.00364 * 300.00036 * 7 5 4 34 34 H 1.07999 * 122.54451 * 0.02562 * 9 8 5 35 35 H 1.08001 * 122.54383 * 180.02562 * 10 9 8 36 36 H 1.07995 * 125.20296 * 179.73420 * 11 10 9 37 37 H 0.97000 * 120.00314 * 85.00180 * 13 2 1 38 38 H 1.09006 * 109.47455 * 300.00590 * 17 14 13 39 39 H 1.09006 * 109.47195 * 60.00087 * 17 14 13 40 40 H 1.08993 * 109.47179 * 300.00326 * 18 17 14 41 41 H 1.08998 * 109.46829 * 60.00251 * 18 17 14 42 42 H 1.09003 * 109.47228 * 300.00086 * 19 18 17 43 43 H 1.08998 * 109.47132 * 60.00397 * 19 18 17 44 44 H 0.97009 * 119.99797 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6134 -1.3138 6 1 3.9954 -0.9923 -0.3869 7 8 3.9385 0.7549 -1.4881 8 6 4.0772 -1.4259 -2.4748 9 6 4.5165 -2.6831 -2.3991 10 6 4.9399 -3.2264 -3.5998 11 6 4.8439 -2.4105 -4.6508 12 16 4.1886 -0.8613 -4.1369 13 7 2.0184 -0.6906 1.1961 14 16 2.4123 0.1772 2.5505 15 8 2.8608 -0.8029 3.4765 16 8 3.2876 1.1906 2.0750 17 6 0.8409 0.8989 3.0985 18 6 1.0753 1.7340 4.3589 19 6 -0.2502 2.3422 4.8215 20 6 -0.0192 3.1653 6.0626 21 1 0.9736 3.2461 6.4800 22 6 -1.0755 3.8143 6.6659 23 7 -2.2846 3.7155 6.1579 24 14 -0.7891 4.8351 8.2039 25 1 0.1760 5.9229 7.9034 26 1 -2.0756 5.4253 8.6530 27 1 -0.2399 3.9687 9.2777 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2618 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.5895 1.1582 -2.2948 34 1 4.5401 -3.2354 -1.4713 35 1 5.3184 -4.2347 -3.6799 36 1 5.1299 -2.6610 -5.6616 37 1 2.1111 -1.6562 1.1949 38 1 0.4387 1.5352 2.3101 39 1 0.1317 0.1009 3.3185 40 1 1.4772 1.0973 5.1470 41 1 1.7846 2.5319 4.1393 42 1 -0.6525 2.9788 4.0334 43 1 -0.9592 1.5440 5.0412 44 1 -3.0278 4.1724 6.5822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158193141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:26 Heat of formation + Delta-G solvation = -137.765428 kcal Electronic energy + Delta-G solvation = -25957.532945 eV Core-core repulsion = 22126.950089 eV Total energy + Delta-G solvation = -3830.582855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.87090 -38.32013 -38.03619 -37.03736 -36.83712 -36.46489 -34.17107 -32.36751 -31.02021 -29.70489 -28.70960 -25.71510 -25.37359 -23.41748 -22.44029 -22.20502 -20.48619 -20.31447 -18.90642 -18.80140 -18.51206 -17.42086 -17.16382 -16.87012 -16.56520 -16.50730 -16.23118 -15.85542 -15.59640 -15.02263 -14.57259 -14.50779 -14.19022 -14.07140 -13.71973 -13.56908 -13.52468 -13.33440 -13.17058 -13.10832 -12.98030 -12.94143 -12.73999 -12.73224 -12.67565 -12.46825 -12.31622 -12.13028 -11.83089 -11.73575 -11.66724 -11.38743 -11.24513 -11.09309 -10.56814 -10.42579 -9.58956 -9.38909 -8.22441 -6.33298 -0.70859 0.03370 0.66038 1.05270 1.40092 1.42643 1.50550 1.80660 1.81234 2.39914 2.77622 3.10836 3.25734 3.37770 3.48703 3.74380 3.87035 3.92566 4.04688 4.10616 4.24560 4.38130 4.42349 4.44634 4.56895 4.62873 4.65530 4.68486 4.86709 4.90222 4.99439 5.04369 5.06436 5.19347 5.32855 5.35858 5.42504 5.45824 5.54825 5.63415 5.79506 6.17375 6.20152 6.67641 6.81792 7.35709 8.88645 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.002038 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.763356 B =13735.150627 C =13950.562429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.139 4.139 5 C 0.173 3.827 6 H 0.103 0.897 7 O -0.562 6.562 8 C -0.223 4.223 9 C -0.142 4.142 10 C -0.143 4.143 11 C -0.216 4.216 12 S 0.105 5.895 13 N -1.103 6.103 14 S 2.624 3.376 15 O -0.995 6.995 16 O -0.985 6.985 17 C -0.611 4.611 18 C -0.106 4.106 19 C 0.033 3.967 20 C -0.554 4.554 21 H 0.059 0.941 22 C 0.003 3.997 23 N -0.928 5.928 24 Si 0.962 3.038 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.268 1.268 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.381 0.619 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.185 0.815 37 H 0.426 0.574 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -14.957 -25.656 31.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.034 3.966 3 H 0.106 0.894 4 C -0.178 4.178 5 C 0.112 3.888 6 H 0.121 0.879 7 O -0.368 6.368 8 C -0.341 4.341 9 C -0.172 4.172 10 C -0.173 4.173 11 C -0.351 4.351 12 S 0.368 5.632 13 N -0.865 5.865 14 S 2.719 3.281 15 O -0.986 6.986 16 O -0.974 6.974 17 C -0.742 4.742 18 C -0.146 4.146 19 C -0.005 4.005 20 C -0.592 4.592 21 H 0.077 0.923 22 C -0.196 4.196 23 N -0.568 5.568 24 Si 0.787 3.213 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.193 1.193 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.229 0.771 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.202 0.798 37 H 0.262 0.738 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.861 -13.401 -25.481 30.432 hybrid contribution -0.646 -1.012 1.030 1.582 sum 9.215 -14.412 -24.451 29.841 Atomic orbital electron populations 1.22499 0.93706 1.04182 1.03673 1.20978 0.94702 0.96899 0.84014 0.89376 1.22545 0.93709 1.03581 0.97972 1.20432 0.94518 0.80141 0.93732 0.87926 1.86763 1.77652 1.24741 1.47693 1.25549 1.09549 1.00082 0.98908 1.20381 1.01528 0.94771 1.00553 1.20440 1.03070 1.02361 0.91466 1.25979 1.08339 0.96373 1.04423 1.84119 1.62968 1.16026 1.00077 1.55407 1.84069 1.20068 1.26924 1.04344 0.76738 0.73835 0.73159 1.93527 1.80712 1.59944 1.64371 1.93572 1.62507 1.61577 1.79773 1.30638 1.22627 1.12500 1.08399 1.21309 1.00810 0.98332 0.94111 1.18943 0.91906 0.94707 0.94987 1.21716 0.94838 1.30729 1.11918 0.92282 1.25930 0.94867 0.97812 1.00943 1.70063 1.00310 1.44471 1.41959 0.85541 0.77607 0.78955 0.79227 1.19290 1.20544 1.19292 0.89545 0.90304 0.92399 0.88009 0.88087 0.77067 0.83299 0.82391 0.79795 0.73750 0.83678 0.83479 0.91753 0.91715 0.97785 0.97830 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.48 71.98 0.68 -1.74 16 2 C 0.14 2.26 2.76 44.99 0.12 2.38 16 3 H 0.09 1.72 7.03 -2.39 -0.02 1.71 16 4 C -0.14 -1.67 4.47 30.60 0.14 -1.53 16 5 C 0.17 2.95 3.35 29.85 0.10 3.05 16 6 H 0.10 2.04 7.61 -2.39 -0.02 2.02 16 7 O -0.56 -11.76 12.69 -148.98 -1.89 -13.65 16 8 C -0.22 -3.45 5.52 24.59 0.14 -3.32 16 9 C -0.14 -2.03 10.05 21.22 0.21 -1.81 16 10 C -0.14 -1.73 10.18 21.22 0.22 -1.52 16 11 C -0.22 -2.47 11.23 66.72 0.75 -1.72 16 12 S 0.10 1.36 22.53 -56.49 -1.27 0.09 16 13 N -1.10 -20.75 4.73 -169.38 -0.80 -21.55 16 14 S 2.62 75.67 5.44 -56.49 -0.31 75.37 16 15 O -1.00 -34.62 18.08 -127.65 -2.31 -36.93 16 16 O -0.98 -35.17 17.39 -127.65 -2.22 -37.39 16 17 C -0.61 -18.36 5.22 71.98 0.38 -17.98 16 18 C -0.11 -4.38 5.16 30.59 0.16 -4.22 16 19 C 0.03 1.70 4.97 29.85 0.15 1.85 16 20 C -0.55 -31.73 9.11 25.60 0.23 -31.50 16 21 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 22 C 0.00 0.16 5.46 84.65 0.46 0.62 16 23 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 24 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.92 5.78 -2.38 -0.01 0.91 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.38 5.29 8.39 -74.05 -0.62 4.67 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 36 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.43 5.95 8.80 -96.75 -0.85 5.10 16 38 H 0.15 3.82 6.77 -2.39 -0.02 3.81 16 39 H 0.15 3.84 8.14 -2.39 -0.02 3.82 16 40 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -78.92 389.85 -3.21 -82.13 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.46 Total: 18.27 kcal Atomic # 6 Polarization: -61.16 SS G_CDS: 3.73 Total: -57.42 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -0.52 Total: -76.89 kcal Atomic # 8 Polarization: -81.55 SS G_CDS: -6.42 Total: -87.97 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 77.03 SS G_CDS: -1.58 Total: 75.45 kcal Total: -78.92 -3.21 -82.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158193141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.633 kcal (2) G-P(sol) polarization free energy of solvation -78.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds