Wall clock time and date at job start Wed Apr 1 2020 04:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00486 * 2 1 4 4 H 1.48496 * 109.47573 * 240.00394 * 3 2 1 5 5 H 1.48502 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47129 * 120.00085 * 3 2 1 7 7 C 1.37876 * 119.99295 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99763 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00499 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47420 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47196 * 180.02562 * 10 9 7 12 12 O 1.42103 * 110.53952 * 68.37525 * 11 10 9 13 13 O 1.42102 * 110.54029 * 291.62924 * 11 10 9 14 14 N 1.65590 * 104.44877 * 180.02562 * 11 10 9 15 15 C 1.46507 * 120.00318 * 64.99859 * 14 11 10 16 16 C 1.52994 * 109.47237 * 164.99749 * 15 14 11 17 17 H 1.09009 * 109.47040 * 60.00225 * 16 15 14 18 18 O 1.42904 * 109.47447 * 300.00568 * 16 15 14 19 19 C 1.53001 * 109.47291 * 179.97438 * 16 15 14 20 20 O 1.42902 * 109.47329 * 185.00184 * 19 16 15 21 21 C 1.35946 * 116.99599 * 180.02562 * 20 19 16 22 22 C 1.38705 * 120.02438 * 179.97438 * 21 20 19 23 23 C 1.38152 * 119.96614 * 179.69405 * 22 21 20 24 24 C 1.38454 * 120.03139 * 0.28380 * 23 22 21 25 25 F 1.35096 * 119.96942 * 179.97438 * 24 23 22 26 26 C 1.38457 * 120.06079 * 359.97015 * 24 23 22 27 27 C 1.38152 * 120.02854 * 0.02562 * 26 24 23 28 28 H 0.97001 * 119.99343 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.46706 * 60.00103 * 9 7 2 30 30 H 1.08998 * 109.47543 * 300.00870 * 9 7 2 31 31 H 1.09001 * 109.46796 * 60.00251 * 10 9 7 32 32 H 1.08997 * 109.46894 * 300.00690 * 10 9 7 33 33 H 0.97005 * 119.99902 * 245.00075 * 14 11 10 34 34 H 1.09004 * 109.46243 * 44.99978 * 15 14 11 35 35 H 1.08996 * 109.47138 * 285.00281 * 15 14 11 36 36 H 0.96698 * 113.99653 * 299.99595 * 18 16 15 37 37 H 1.09005 * 109.46624 * 65.00136 * 19 16 15 38 38 H 1.08995 * 109.46914 * 305.00760 * 19 16 15 39 39 H 1.08002 * 120.02027 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.98455 * 180.29891 * 23 22 21 41 41 H 1.07999 * 119.98352 * 180.02562 * 26 24 23 42 42 H 1.07994 * 120.01250 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 16 1.3379 -5.2331 -0.0013 12 8 0.6643 -5.4193 -1.2386 13 8 0.6634 -5.4200 1.2354 14 7 2.5199 -6.3928 -0.0005 15 6 3.4175 -6.5232 1.1500 16 6 4.1484 -7.8653 1.0771 17 1 4.7292 -7.9131 0.1559 18 8 3.1943 -8.9289 1.0944 19 6 5.0864 -8.0011 2.2783 20 8 5.8539 -9.1997 2.1502 21 6 6.7425 -9.4724 3.1422 22 6 7.5198 -10.6197 3.0817 23 6 8.4270 -10.8924 4.0873 24 6 8.5563 -10.0243 5.1580 25 9 9.4434 -10.2925 6.1410 26 6 7.7772 -8.8814 5.2223 27 6 6.8693 -8.6062 4.2181 28 1 -0.4849 0.8401 0.0004 29 1 0.6238 -2.5567 -0.8904 30 1 0.6244 -2.5571 0.8896 31 1 2.8716 -3.6045 0.8895 32 1 2.8717 -3.6044 -0.8904 33 1 2.6180 -6.9859 -0.7619 34 1 2.8367 -6.4753 2.0711 35 1 4.1453 -5.7119 1.1368 36 1 2.6410 -8.9481 1.8872 37 1 4.4985 -8.0423 3.1953 38 1 5.7567 -7.1425 2.3147 39 1 7.4191 -11.2971 2.2465 40 1 9.0358 -11.7831 4.0380 41 1 7.8794 -8.2049 6.0580 42 1 6.2621 -7.7146 4.2683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159985568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:21 Heat of formation + Delta-G solvation = -189.850926 kcal Electronic energy + Delta-G solvation = -27060.907207 eV Core-core repulsion = 22661.852580 eV Total energy + Delta-G solvation = -4399.054628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.20738 -40.64601 -38.60253 -37.20502 -36.62893 -35.51275 -34.53576 -33.94772 -31.83652 -31.21948 -30.95593 -29.44784 -26.00805 -25.65727 -23.66515 -22.64325 -22.13659 -21.66184 -19.02684 -18.86046 -17.96842 -17.58932 -17.47132 -16.99717 -16.76567 -16.34779 -15.96109 -15.70486 -15.57773 -15.20442 -15.10910 -14.67274 -14.60535 -14.51554 -14.16085 -13.86364 -13.46767 -13.45461 -13.18672 -12.83812 -12.66868 -12.54060 -11.83359 -11.79813 -11.66237 -11.64635 -11.55456 -11.32720 -11.17221 -11.11226 -11.02116 -10.52312 -10.50022 -10.43166 -9.88133 -9.68571 -9.59638 -9.10787 -8.56374 -8.54713 -6.16976 -4.22989 0.66346 0.69586 0.74831 2.50045 3.08800 3.09286 3.23321 3.28692 3.30058 3.86465 3.95301 4.09985 4.17574 4.26068 4.31550 4.34055 4.38794 4.47301 4.60383 4.64620 4.75010 4.85721 4.91569 5.08252 5.17038 5.18219 5.38021 5.44316 5.56487 5.59231 5.63981 5.66972 5.73398 5.80427 6.21355 6.41339 6.84702 6.98464 7.24425 7.27307 7.30633 7.75312 8.12116 8.80090 9.41943 10.93903 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.001972 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.274331 B =14198.207423 C =15894.806650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.596 3.404 12 O -0.964 6.964 13 O -0.967 6.967 14 N -1.120 6.120 15 C 0.087 3.913 16 C 0.107 3.893 17 H 0.118 0.882 18 O -0.545 6.545 19 C 0.023 3.977 20 O -0.299 6.299 21 C 0.123 3.877 22 C -0.123 4.123 23 C -0.113 4.113 24 C 0.056 3.944 25 F -0.142 7.142 26 C -0.111 4.111 27 C -0.182 4.182 28 H 0.266 0.734 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.417 0.583 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.379 0.621 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.202 -20.487 7.897 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.693 3.307 12 O -0.954 6.954 13 O -0.957 6.957 14 N -0.878 5.878 15 C -0.041 4.041 16 C 0.046 3.954 17 H 0.136 0.864 18 O -0.350 6.350 19 C -0.053 4.053 20 O -0.212 6.212 21 C 0.077 3.923 22 C -0.142 4.142 23 C -0.132 4.132 24 C 0.037 3.963 25 F -0.121 7.121 26 C -0.130 4.130 27 C -0.201 4.201 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.251 0.749 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.227 0.773 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 15.321 -20.712 7.345 26.789 hybrid contribution 1.107 1.392 0.633 1.888 sum 16.429 -19.320 7.977 26.586 Atomic orbital electron populations 1.69944 1.06106 1.27359 1.49317 1.25074 0.94994 0.99566 0.94879 0.86519 0.79484 0.82515 0.78676 1.20079 1.21060 1.20113 1.20950 0.92983 0.89779 1.52446 0.92128 1.18964 0.92693 0.90525 0.98952 1.30457 1.13747 1.18132 1.09999 1.05511 0.74570 0.76449 0.74148 1.93566 1.71410 1.85263 1.45160 1.93534 1.71344 1.84999 1.45849 1.55675 1.52804 1.52381 1.26956 1.21791 0.94217 0.97709 0.90396 1.22080 0.88394 0.86473 0.98446 0.86435 1.86647 1.51081 1.50452 1.46848 1.23645 0.94639 0.86731 1.00301 1.86157 1.49812 1.42245 1.42988 1.19068 0.90666 0.94418 0.88108 1.20310 0.96703 0.96710 1.00473 1.20981 0.99351 0.99900 0.92950 1.17600 0.93229 0.97086 0.88418 1.91497 1.66314 1.93904 1.60359 1.20978 0.95682 0.96424 0.99912 1.21182 1.02385 1.01525 0.95022 0.92433 0.94777 0.94814 0.86435 0.86035 0.74908 0.89504 0.90341 0.77331 0.90837 0.90250 0.84004 0.84026 0.84341 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -13.99 9.11 -34.44 -0.31 -14.30 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.37 6.01 37.16 0.22 -10.14 16 11 S 2.60 42.38 5.46 -107.50 -0.59 41.79 16 12 O -0.96 -19.12 18.08 -57.54 -1.04 -20.16 16 13 O -0.97 -18.46 17.49 -57.54 -1.01 -19.47 16 14 N -1.12 -12.51 5.75 -10.61 -0.06 -12.57 16 15 C 0.09 0.72 5.80 -4.04 -0.02 0.69 16 16 C 0.11 0.78 3.34 -26.73 -0.09 0.69 16 17 H 0.12 0.84 8.14 -51.92 -0.42 0.41 16 18 O -0.55 -4.89 13.17 -40.05 -0.53 -5.42 16 19 C 0.02 0.14 4.38 37.16 0.16 0.30 16 20 O -0.30 -2.50 10.10 -24.39 -0.25 -2.74 16 21 C 0.12 0.98 6.69 -39.24 -0.26 0.71 16 22 C -0.12 -0.89 9.98 -39.44 -0.39 -1.28 16 23 C -0.11 -0.78 10.02 -39.53 -0.40 -1.18 16 24 C 0.06 0.45 7.30 -39.42 -0.29 0.16 16 25 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 26 C -0.11 -0.79 10.02 -39.53 -0.40 -1.19 16 27 C -0.18 -1.26 9.04 -39.44 -0.36 -1.62 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.12 1.77 8.14 -51.92 -0.42 1.35 16 32 H 0.12 1.92 8.14 -51.93 -0.42 1.50 16 33 H 0.42 4.20 8.62 -34.46 -0.30 3.90 16 34 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.38 2.39 9.05 45.56 0.41 2.80 16 37 H 0.07 0.35 7.65 -51.93 -0.40 -0.05 16 38 H 0.08 0.36 7.67 -51.93 -0.40 -0.04 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.14 0.70 6.30 -52.49 -0.33 0.37 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -36.66 379.63 -9.12 -45.77 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.76 Total: 2.92 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -2.37 Total: -25.11 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.68 Total: -37.78 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -2.82 Total: -47.80 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 42.38 SS G_CDS: -0.59 Total: 41.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.66 -9.12 -45.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159985568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.077 kcal (2) G-P(sol) polarization free energy of solvation -36.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds