Wall clock time and date at job start Wed Apr 1 2020 04:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00486 * 2 1 4 4 H 1.48496 * 109.47573 * 240.00394 * 3 2 1 5 5 H 1.48502 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47129 * 120.00085 * 3 2 1 7 7 C 1.37876 * 119.99295 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99763 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00499 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47420 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47196 * 180.02562 * 10 9 7 12 12 O 1.42103 * 110.53952 * 68.37525 * 11 10 9 13 13 O 1.42102 * 110.54029 * 291.62924 * 11 10 9 14 14 N 1.65590 * 104.44877 * 180.02562 * 11 10 9 15 15 C 1.46507 * 120.00318 * 64.99859 * 14 11 10 16 16 C 1.52994 * 109.47237 * 164.99749 * 15 14 11 17 17 H 1.09009 * 109.47040 * 60.00225 * 16 15 14 18 18 O 1.42904 * 109.47447 * 300.00568 * 16 15 14 19 19 C 1.53001 * 109.47291 * 179.97438 * 16 15 14 20 20 O 1.42902 * 109.47329 * 185.00184 * 19 16 15 21 21 C 1.35946 * 116.99599 * 180.02562 * 20 19 16 22 22 C 1.38705 * 120.02438 * 179.97438 * 21 20 19 23 23 C 1.38152 * 119.96614 * 179.69405 * 22 21 20 24 24 C 1.38454 * 120.03139 * 0.28380 * 23 22 21 25 25 F 1.35096 * 119.96942 * 179.97438 * 24 23 22 26 26 C 1.38457 * 120.06079 * 359.97015 * 24 23 22 27 27 C 1.38152 * 120.02854 * 0.02562 * 26 24 23 28 28 H 0.97001 * 119.99343 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.46706 * 60.00103 * 9 7 2 30 30 H 1.08998 * 109.47543 * 300.00870 * 9 7 2 31 31 H 1.09001 * 109.46796 * 60.00251 * 10 9 7 32 32 H 1.08997 * 109.46894 * 300.00690 * 10 9 7 33 33 H 0.97005 * 119.99902 * 245.00075 * 14 11 10 34 34 H 1.09004 * 109.46243 * 44.99978 * 15 14 11 35 35 H 1.08996 * 109.47138 * 285.00281 * 15 14 11 36 36 H 0.96698 * 113.99653 * 299.99595 * 18 16 15 37 37 H 1.09005 * 109.46624 * 65.00136 * 19 16 15 38 38 H 1.08995 * 109.46914 * 305.00760 * 19 16 15 39 39 H 1.08002 * 120.02027 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.98455 * 180.29891 * 23 22 21 41 41 H 1.07999 * 119.98352 * 180.02562 * 26 24 23 42 42 H 1.07994 * 120.01250 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 16 1.3379 -5.2331 -0.0013 12 8 0.6643 -5.4193 -1.2386 13 8 0.6634 -5.4200 1.2354 14 7 2.5199 -6.3928 -0.0005 15 6 3.4175 -6.5232 1.1500 16 6 4.1484 -7.8653 1.0771 17 1 4.7292 -7.9131 0.1559 18 8 3.1943 -8.9289 1.0944 19 6 5.0864 -8.0011 2.2783 20 8 5.8539 -9.1997 2.1502 21 6 6.7425 -9.4724 3.1422 22 6 7.5198 -10.6197 3.0817 23 6 8.4270 -10.8924 4.0873 24 6 8.5563 -10.0243 5.1580 25 9 9.4434 -10.2925 6.1410 26 6 7.7772 -8.8814 5.2223 27 6 6.8693 -8.6062 4.2181 28 1 -0.4849 0.8401 0.0004 29 1 0.6238 -2.5567 -0.8904 30 1 0.6244 -2.5571 0.8896 31 1 2.8716 -3.6045 0.8895 32 1 2.8717 -3.6044 -0.8904 33 1 2.6180 -6.9859 -0.7619 34 1 2.8367 -6.4753 2.0711 35 1 4.1453 -5.7119 1.1368 36 1 2.6410 -8.9481 1.8872 37 1 4.4985 -8.0423 3.1953 38 1 5.7567 -7.1425 2.3147 39 1 7.4191 -11.2971 2.2465 40 1 9.0358 -11.7831 4.0380 41 1 7.8794 -8.2049 6.0580 42 1 6.2621 -7.7146 4.2683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159985568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:20 Heat of formation + Delta-G solvation = -219.263385 kcal Electronic energy + Delta-G solvation = -27062.182627 eV Core-core repulsion = 22661.852580 eV Total energy + Delta-G solvation = -4400.330048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.108 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.82295 -41.16500 -39.19353 -38.11974 -37.74341 -36.96539 -35.86404 -35.37126 -33.09205 -32.34444 -31.53847 -30.01910 -27.56140 -26.63340 -24.20312 -23.58313 -23.20443 -22.60258 -20.25832 -19.39777 -19.06573 -18.59250 -18.24964 -18.04895 -17.54276 -17.33576 -16.98024 -16.70299 -16.54994 -16.51216 -15.85795 -15.76760 -15.56417 -15.27396 -14.99735 -14.67534 -14.46520 -14.38427 -13.99827 -13.88767 -13.67813 -13.38989 -13.21171 -13.15320 -13.08165 -12.98975 -12.88577 -12.76694 -12.20528 -12.15484 -12.12765 -11.82326 -11.71600 -11.68800 -11.18255 -11.14171 -10.62116 -10.31774 -10.18421 -9.11078 -8.24270 -6.37942 -0.64509 0.16563 0.19986 1.42296 1.45191 1.53301 1.78244 2.16409 2.39307 2.57107 2.87297 3.09352 3.30894 3.33751 3.46706 3.62804 3.71602 3.79630 3.85056 4.01887 4.06341 4.13860 4.19214 4.30168 4.35508 4.43374 4.51789 4.65558 4.79787 4.85559 4.91417 5.02413 5.13354 5.15705 5.22448 5.31184 5.32377 5.69789 5.70495 6.08101 6.12383 6.35269 6.76180 6.78108 7.32192 8.87536 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.001972 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.274331 B =14198.207423 C =15894.806650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.018 3.982 10 C -0.588 4.588 11 S 2.626 3.374 12 O -1.003 7.003 13 O -0.996 6.996 14 N -1.103 6.103 15 C 0.074 3.926 16 C 0.113 3.887 17 H 0.120 0.880 18 O -0.567 6.567 19 C 0.020 3.980 20 O -0.315 6.315 21 C 0.113 3.887 22 C -0.133 4.133 23 C -0.113 4.113 24 C 0.035 3.965 25 F -0.152 7.152 26 C -0.116 4.116 27 C -0.183 4.183 28 H 0.266 0.734 29 H 0.004 0.996 30 H 0.008 0.992 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.425 0.575 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.388 0.612 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.531 -20.434 8.358 28.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.576 4.576 8 H 0.096 0.904 9 C -0.021 4.021 10 C -0.720 4.720 11 S 2.723 3.277 12 O -0.993 6.993 13 O -0.986 6.986 14 N -0.865 5.865 15 C -0.052 4.052 16 C 0.052 3.948 17 H 0.138 0.862 18 O -0.374 6.374 19 C -0.056 4.056 20 O -0.228 6.228 21 C 0.067 3.933 22 C -0.151 4.151 23 C -0.132 4.132 24 C 0.016 3.984 25 F -0.131 7.131 26 C -0.134 4.134 27 C -0.202 4.202 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.026 0.974 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.262 0.738 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.238 0.762 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.169 0.831 40 H 0.176 0.824 41 H 0.170 0.830 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 17.664 -20.663 7.809 28.283 hybrid contribution 0.400 1.274 0.500 1.426 sum 18.064 -19.389 8.308 27.772 Atomic orbital electron populations 1.70100 1.08058 1.28286 1.50944 1.26122 0.95847 1.03895 0.94559 0.85379 0.78107 0.77408 0.79442 1.18907 1.21298 1.18627 1.21505 0.94034 0.90761 1.51320 0.90418 1.18831 0.93731 0.93183 0.96366 1.30341 1.12756 1.16275 1.12623 1.04288 0.74542 0.76316 0.72573 1.93508 1.73135 1.85853 1.46825 1.93496 1.72653 1.85448 1.46989 1.55129 1.52385 1.50639 1.28354 1.22164 0.94410 0.99521 0.89113 1.22039 0.88143 0.85306 0.99288 0.86249 1.86618 1.51729 1.51204 1.47807 1.23740 0.94860 0.86824 1.00176 1.86121 1.50109 1.43246 1.43350 1.19255 0.90802 0.94866 0.88398 1.20506 0.96757 0.96980 1.00864 1.21173 0.99290 1.00257 0.92447 1.17879 0.93774 0.98022 0.88763 1.91468 1.66746 1.94052 1.60811 1.21203 0.95406 0.96359 1.00454 1.21393 1.02349 1.02003 0.94450 0.92503 0.97781 0.97363 0.83404 0.83894 0.73843 0.89124 0.87402 0.76239 0.89414 0.88186 0.83123 0.82447 0.82981 0.82300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.54 -28.55 9.11 25.60 0.23 -28.32 16 8 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.02 0.88 4.98 29.85 0.15 1.03 16 10 C -0.59 -19.74 6.01 71.98 0.43 -19.31 16 11 S 2.63 83.60 5.46 -56.49 -0.31 83.29 16 12 O -1.00 -39.96 18.08 -127.65 -2.31 -42.27 16 13 O -1.00 -37.57 17.49 -127.65 -2.23 -39.80 16 14 N -1.10 -22.14 5.75 -187.48 -1.08 -23.21 16 15 C 0.07 0.99 5.80 86.38 0.50 1.49 16 16 C 0.11 1.33 3.34 30.59 0.10 1.44 16 17 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 18 O -0.57 -9.10 13.17 -144.37 -1.90 -11.00 16 19 C 0.02 0.18 4.38 71.98 0.31 0.50 16 20 O -0.31 -4.58 10.10 -88.34 -0.89 -5.47 16 21 C 0.11 1.58 6.69 22.49 0.15 1.73 16 22 C -0.13 -1.74 9.98 22.36 0.22 -1.52 16 23 C -0.11 -1.44 10.02 22.30 0.22 -1.22 16 24 C 0.03 0.53 7.30 22.37 0.16 0.69 16 25 F -0.15 -2.65 17.27 44.97 0.78 -1.88 16 26 C -0.12 -1.47 10.02 22.30 0.22 -1.25 16 27 C -0.18 -2.14 9.04 22.36 0.20 -1.93 16 28 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.15 4.01 8.14 -2.39 -0.02 3.99 16 32 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 33 H 0.43 7.65 8.62 -96.75 -0.83 6.82 16 34 H 0.09 1.20 7.69 -2.39 -0.02 1.18 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.39 4.25 9.05 -74.06 -0.67 3.58 16 37 H 0.09 0.56 7.65 -2.38 -0.02 0.54 16 38 H 0.10 0.51 7.67 -2.39 -0.02 0.49 16 39 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.16 1.10 6.30 -2.91 -0.02 1.08 16 Total: -1.00 -80.59 379.63 -2.69 -83.28 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.44 Total: 15.03 kcal Atomic # 6 Polarization: -49.91 SS G_CDS: 3.38 Total: -46.53 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -0.79 Total: -78.73 kcal Atomic # 8 Polarization: -91.21 SS G_CDS: -7.33 Total: -98.55 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 83.60 SS G_CDS: -0.31 Total: 83.29 kcal Total: -80.59 -2.69 -83.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159985568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.985 kcal (2) G-P(sol) polarization free energy of solvation -80.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds