Wall clock time and date at job start Wed Apr 1 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00204 * 2 1 4 4 C 1.52998 * 109.47406 * 184.93020 * 3 2 1 5 5 O 1.42904 * 109.47062 * 66.09620 * 4 3 2 6 6 C 1.35948 * 116.99853 * 184.80014 * 5 4 3 7 7 C 1.38725 * 120.03086 * 354.54417 * 6 5 4 8 8 C 1.38125 * 119.97398 * 179.97438 * 7 6 5 9 9 C 1.38482 * 120.02466 * 359.97438 * 8 7 6 10 10 F 1.35098 * 119.96883 * 179.97438 * 9 8 7 11 11 C 1.38433 * 120.06190 * 359.79598 * 9 8 7 12 12 C 1.38169 * 120.02860 * 0.45378 * 11 9 8 13 13 S 1.76202 * 120.01733 * 179.79337 * 12 11 9 14 14 O 1.42092 * 106.40121 * 130.28839 * 13 12 11 15 15 O 1.42105 * 106.39935 * 357.37378 * 13 12 11 16 16 N 1.65600 * 107.22027 * 243.83377 * 13 12 11 17 17 C 1.46499 * 120.00155 * 64.63460 * 16 13 12 18 18 H 1.09001 * 109.46834 * 334.30896 * 17 16 13 19 19 C 1.53007 * 109.46842 * 94.30343 * 17 16 13 20 20 C 1.50696 * 109.47382 * 214.30329 * 17 16 13 21 21 H 1.08005 * 119.99621 * 354.42030 * 20 17 16 22 22 C 1.37875 * 120.00121 * 174.42486 * 20 17 16 23 23 N 1.31514 * 120.00057 * 1.01713 * 22 20 17 24 24 Si 1.86800 * 119.99752 * 181.01940 * 22 20 17 25 25 H 1.48497 * 109.47440 * 59.99926 * 24 22 20 26 26 H 1.48509 * 109.46823 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46906 * 299.99476 * 24 22 20 28 28 H 1.08999 * 109.47694 * 304.94397 * 1 2 3 29 29 H 1.09002 * 109.47268 * 64.93993 * 1 2 3 30 30 H 1.09003 * 109.47381 * 184.94019 * 1 2 3 31 31 H 1.08995 * 109.47412 * 64.92346 * 3 2 1 32 32 H 1.09009 * 109.46966 * 304.92815 * 3 2 1 33 33 H 1.09004 * 109.46535 * 306.09680 * 4 3 2 34 34 H 1.08994 * 109.47356 * 186.09838 * 4 3 2 35 35 H 1.08005 * 120.01677 * 0.02562 * 7 6 5 36 36 H 1.07998 * 119.99335 * 180.02562 * 8 7 6 37 37 H 1.08004 * 119.98572 * 180.23068 * 11 9 8 38 38 H 0.97003 * 119.99867 * 244.35805 * 16 13 12 39 39 H 1.09004 * 109.46772 * 180.02562 * 19 17 16 40 40 H 1.09000 * 109.47108 * 299.99755 * 19 17 16 41 41 H 1.09000 * 109.47194 * 59.99883 * 19 17 16 42 42 H 0.96995 * 119.99617 * 185.01103 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5306 1.1868 -0.1240 5 8 3.8635 0.6490 -1.4054 6 6 5.1759 0.3843 -1.6416 7 6 6.1355 0.7412 -0.7056 8 6 7.4685 0.4713 -0.9466 9 6 7.8471 -0.1560 -2.1217 10 9 9.1512 -0.4190 -2.3565 11 6 6.8900 -0.5170 -3.0545 12 6 5.5564 -0.2435 -2.8182 13 16 4.3391 -0.6983 -4.0082 14 8 3.3236 -1.3934 -3.2977 15 8 5.0427 -1.2607 -5.1072 16 7 3.6481 0.7011 -4.5620 17 6 4.4538 1.6701 -5.3091 18 1 5.5017 1.5645 -5.0283 19 6 4.2994 1.4127 -6.8094 20 6 3.9857 3.0661 -4.9882 21 1 3.1136 3.2142 -4.3685 22 6 4.6708 4.1543 -5.4856 23 7 5.7209 3.9740 -6.2566 24 14 4.1074 5.8848 -5.0644 25 1 4.1517 6.0753 -3.5924 26 1 5.0056 6.8706 -5.7179 27 1 2.7175 6.0843 -5.5479 28 1 -0.3634 0.5886 0.8424 29 1 -0.3634 0.4353 -0.9309 30 1 -0.3634 -1.0239 0.0885 31 1 1.7602 1.8145 0.9307 32 1 1.6205 1.8767 -0.8426 33 1 3.9082 0.5263 0.6566 34 1 3.9820 2.1729 -0.0154 35 1 5.8404 1.2293 0.2116 36 1 8.2158 0.7487 -0.2179 37 1 7.1862 -1.0095 -3.9689 38 1 2.7089 0.8772 -4.3953 39 1 4.8993 2.1334 -7.3652 40 1 4.6380 0.4030 -7.0416 41 1 3.2515 1.5181 -7.0903 42 1 6.2458 4.7361 -6.5471 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190587083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:16 Heat of formation + Delta-G solvation = -173.560221 kcal Electronic energy + Delta-G solvation = -29921.533072 eV Core-core repulsion = 25523.184862 eV Total energy + Delta-G solvation = -4398.348210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.73062 -40.23324 -38.06427 -37.08405 -36.45847 -35.34978 -35.19201 -32.15749 -31.69047 -30.88894 -29.02142 -28.26226 -26.43193 -25.18091 -24.13781 -23.11473 -21.84351 -20.90193 -19.27299 -18.41451 -17.68055 -17.16072 -17.01345 -16.90489 -16.01293 -15.72553 -15.54871 -15.53354 -15.22944 -15.12804 -15.10044 -14.65493 -14.49537 -13.74411 -13.58580 -13.19929 -12.79450 -12.62702 -12.56044 -12.36798 -12.16115 -11.86621 -11.64376 -11.59780 -11.49256 -11.35108 -11.32758 -11.13944 -10.99936 -10.86807 -10.60387 -10.40845 -10.30978 -10.08408 -9.77307 -9.46517 -9.14469 -8.66022 -8.25085 -8.17693 -6.13196 -4.20668 0.74036 1.16307 1.21832 2.96496 3.22205 3.28623 3.28938 3.31616 3.62772 3.79111 4.22521 4.33491 4.37714 4.56274 4.64303 4.79572 4.91311 5.02216 5.07406 5.18533 5.18934 5.26262 5.33378 5.34581 5.45327 5.49230 5.63214 5.64262 5.86026 5.98330 6.05802 6.40885 6.65810 6.83580 7.02694 7.07670 7.11675 7.17426 7.58422 7.70663 7.87876 8.02211 8.29714 8.82876 9.44924 10.93646 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007226 B = 0.005666 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3874.167247 B = 4940.651391 C = 6237.558157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.060 3.940 4 C 0.059 3.941 5 O -0.289 6.289 6 C 0.229 3.771 7 C -0.204 4.204 8 C -0.063 4.063 9 C 0.037 3.963 10 F -0.139 7.139 11 C -0.014 4.014 12 C -0.673 4.673 13 S 2.695 3.305 14 O -0.964 6.964 15 O -0.966 6.966 16 N -1.092 6.092 17 C 0.275 3.725 18 H 0.043 0.957 19 C -0.155 4.155 20 C -0.521 4.521 21 H 0.063 0.937 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.896 3.104 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.410 0.590 39 H 0.083 0.917 40 H 0.028 0.972 41 H 0.033 0.967 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.882 -4.450 14.081 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.017 4.017 4 C -0.016 4.016 5 O -0.201 6.201 6 C 0.181 3.819 7 C -0.223 4.223 8 C -0.082 4.082 9 C 0.017 3.983 10 F -0.118 7.118 11 C -0.034 4.034 12 C -0.757 4.757 13 S 2.781 3.219 14 O -0.954 6.954 15 O -0.956 6.956 16 N -0.854 5.854 17 C 0.171 3.829 18 H 0.060 0.940 19 C -0.214 4.214 20 C -0.561 4.561 21 H 0.081 0.919 22 C -0.138 4.138 23 N -0.525 5.525 24 Si 0.724 3.276 25 H -0.204 1.204 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.178 0.822 38 H 0.244 0.756 39 H 0.101 0.899 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.773 -5.413 13.530 14.834 hybrid contribution 0.084 2.062 0.957 2.274 sum -2.690 -3.351 14.487 15.111 Atomic orbital electron populations 1.22746 0.80882 1.02801 1.00001 1.87997 1.19800 1.26658 1.95386 1.22571 0.91390 0.86204 1.01493 1.22988 0.95487 0.99254 0.83823 1.86223 1.20948 1.77381 1.35504 1.18215 0.83399 0.88620 0.91698 1.21112 0.92606 1.07323 1.01302 1.21103 0.96603 0.95023 0.95499 1.17492 0.78495 1.05490 0.96825 1.91493 1.32989 1.92525 1.94778 1.20792 0.89929 0.94205 0.98466 1.30378 1.12751 1.17839 1.14750 1.01858 0.73187 0.73508 0.73360 1.93567 1.55979 1.71519 1.74289 1.93557 1.75223 1.76269 1.50524 1.55465 1.20925 1.39693 1.69308 1.18511 0.89975 0.86557 0.87899 0.93977 1.22215 1.00368 0.99573 0.99266 1.21233 1.13693 0.89797 1.31349 0.91877 1.24910 0.95344 0.99140 0.94445 1.69894 1.17318 1.31312 1.33934 0.86601 0.78700 0.83903 0.78406 1.20429 1.21203 1.20130 0.94387 0.93619 0.89565 0.91044 0.91281 0.90666 0.89701 0.83945 0.84015 0.82218 0.75636 0.89853 0.95332 0.94782 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.13 10.68 -38.95 -0.42 -5.54 16 3 C 0.06 0.66 6.32 37.16 0.23 0.90 16 4 C 0.06 0.69 5.12 37.16 0.19 0.88 16 5 O -0.29 -4.74 8.94 -36.00 -0.32 -5.07 16 6 C 0.23 3.85 6.63 -39.24 -0.26 3.59 16 7 C -0.20 -2.76 9.03 -39.44 -0.36 -3.11 16 8 C -0.06 -0.84 10.02 -39.53 -0.40 -1.24 16 9 C 0.04 0.58 7.30 -39.42 -0.29 0.29 16 10 F -0.14 -2.14 17.27 2.25 0.04 -2.11 16 11 C -0.01 -0.25 9.52 -39.53 -0.38 -0.62 16 12 C -0.67 -12.47 5.71 -39.44 -0.23 -12.70 16 13 S 2.70 54.42 5.22 -107.50 -0.56 53.86 16 14 O -0.96 -20.48 17.35 -62.18 -1.08 -21.56 16 15 O -0.97 -21.20 16.17 -57.17 -0.92 -22.13 16 16 N -1.09 -22.73 5.47 -5.88 -0.03 -22.76 16 17 C 0.27 6.63 2.66 -69.08 -0.18 6.45 16 18 H 0.04 1.09 7.83 -51.93 -0.41 0.69 16 19 C -0.15 -3.72 9.35 37.16 0.35 -3.37 16 20 C -0.52 -13.30 8.69 -34.44 -0.30 -13.60 16 21 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 22 C 0.06 1.69 5.33 -17.82 -0.10 1.59 16 23 N -0.89 -24.20 11.69 55.43 0.65 -23.55 16 24 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.08 0.75 7.63 -51.93 -0.40 0.36 16 34 H 0.09 0.79 7.71 -51.93 -0.40 0.39 16 35 H 0.14 1.39 6.33 -52.48 -0.33 1.06 16 36 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.16 2.65 7.34 -52.48 -0.39 2.26 16 38 H 0.41 7.81 8.82 -34.47 -0.30 7.51 16 39 H 0.08 2.15 6.49 -51.93 -0.34 1.82 16 40 H 0.03 0.65 7.56 -51.93 -0.39 0.26 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -32.94 373.05 -8.10 -41.04 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.46 Total: 6.58 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -0.60 Total: -19.50 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.62 Total: -46.31 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -2.74 Total: -54.30 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 54.42 SS G_CDS: -0.56 Total: 53.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.94 -8.10 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190587083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.519 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds