Wall clock time and date at job start Wed Apr 1 2020 04:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00204 * 2 1 4 4 C 1.52998 * 109.47406 * 184.93020 * 3 2 1 5 5 O 1.42904 * 109.47062 * 66.09620 * 4 3 2 6 6 C 1.35948 * 116.99853 * 184.80014 * 5 4 3 7 7 C 1.38725 * 120.03086 * 354.54417 * 6 5 4 8 8 C 1.38125 * 119.97398 * 179.97438 * 7 6 5 9 9 C 1.38482 * 120.02466 * 359.97438 * 8 7 6 10 10 F 1.35098 * 119.96883 * 179.97438 * 9 8 7 11 11 C 1.38433 * 120.06190 * 359.79598 * 9 8 7 12 12 C 1.38169 * 120.02860 * 0.45378 * 11 9 8 13 13 S 1.76202 * 120.01733 * 179.79337 * 12 11 9 14 14 O 1.42092 * 106.40121 * 130.28839 * 13 12 11 15 15 O 1.42105 * 106.39935 * 357.37378 * 13 12 11 16 16 N 1.65600 * 107.22027 * 243.83377 * 13 12 11 17 17 C 1.46499 * 120.00155 * 64.63460 * 16 13 12 18 18 H 1.09001 * 109.46834 * 334.30896 * 17 16 13 19 19 C 1.53007 * 109.46842 * 94.30343 * 17 16 13 20 20 C 1.50696 * 109.47382 * 214.30329 * 17 16 13 21 21 H 1.08005 * 119.99621 * 354.42030 * 20 17 16 22 22 C 1.37875 * 120.00121 * 174.42486 * 20 17 16 23 23 N 1.31514 * 120.00057 * 1.01713 * 22 20 17 24 24 Si 1.86800 * 119.99752 * 181.01940 * 22 20 17 25 25 H 1.48497 * 109.47440 * 59.99926 * 24 22 20 26 26 H 1.48509 * 109.46823 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46906 * 299.99476 * 24 22 20 28 28 H 1.08999 * 109.47694 * 304.94397 * 1 2 3 29 29 H 1.09002 * 109.47268 * 64.93993 * 1 2 3 30 30 H 1.09003 * 109.47381 * 184.94019 * 1 2 3 31 31 H 1.08995 * 109.47412 * 64.92346 * 3 2 1 32 32 H 1.09009 * 109.46966 * 304.92815 * 3 2 1 33 33 H 1.09004 * 109.46535 * 306.09680 * 4 3 2 34 34 H 1.08994 * 109.47356 * 186.09838 * 4 3 2 35 35 H 1.08005 * 120.01677 * 0.02562 * 7 6 5 36 36 H 1.07998 * 119.99335 * 180.02562 * 8 7 6 37 37 H 1.08004 * 119.98572 * 180.23068 * 11 9 8 38 38 H 0.97003 * 119.99867 * 244.35805 * 16 13 12 39 39 H 1.09004 * 109.46772 * 180.02562 * 19 17 16 40 40 H 1.09000 * 109.47108 * 299.99755 * 19 17 16 41 41 H 1.09000 * 109.47194 * 59.99883 * 19 17 16 42 42 H 0.96995 * 119.99617 * 185.01103 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5306 1.1868 -0.1240 5 8 3.8635 0.6490 -1.4054 6 6 5.1759 0.3843 -1.6416 7 6 6.1355 0.7412 -0.7056 8 6 7.4685 0.4713 -0.9466 9 6 7.8471 -0.1560 -2.1217 10 9 9.1512 -0.4190 -2.3565 11 6 6.8900 -0.5170 -3.0545 12 6 5.5564 -0.2435 -2.8182 13 16 4.3391 -0.6983 -4.0082 14 8 3.3236 -1.3934 -3.2977 15 8 5.0427 -1.2607 -5.1072 16 7 3.6481 0.7011 -4.5620 17 6 4.4538 1.6701 -5.3091 18 1 5.5017 1.5645 -5.0283 19 6 4.2994 1.4127 -6.8094 20 6 3.9857 3.0661 -4.9882 21 1 3.1136 3.2142 -4.3685 22 6 4.6708 4.1543 -5.4856 23 7 5.7209 3.9740 -6.2566 24 14 4.1074 5.8848 -5.0644 25 1 4.1517 6.0753 -3.5924 26 1 5.0056 6.8706 -5.7179 27 1 2.7175 6.0843 -5.5479 28 1 -0.3634 0.5886 0.8424 29 1 -0.3634 0.4353 -0.9309 30 1 -0.3634 -1.0239 0.0885 31 1 1.7602 1.8145 0.9307 32 1 1.6205 1.8767 -0.8426 33 1 3.9082 0.5263 0.6566 34 1 3.9820 2.1729 -0.0154 35 1 5.8404 1.2293 0.2116 36 1 8.2158 0.7487 -0.2179 37 1 7.1862 -1.0095 -3.9689 38 1 2.7089 0.8772 -4.3953 39 1 4.8993 2.1334 -7.3652 40 1 4.6380 0.4030 -7.0416 41 1 3.2515 1.5181 -7.0903 42 1 6.2458 4.7361 -6.5471 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190587083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:15 Heat of formation + Delta-G solvation = -197.466454 kcal Electronic energy + Delta-G solvation = -29922.569724 eV Core-core repulsion = 25523.184862 eV Total energy + Delta-G solvation = -4399.384862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.108 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.93118 -41.36105 -39.03097 -38.35392 -37.92669 -37.20291 -36.87539 -34.08475 -32.81846 -31.88039 -30.18082 -30.09335 -27.23322 -27.19272 -25.21435 -24.26873 -22.90731 -22.77704 -20.71916 -19.75634 -19.14534 -18.71551 -18.24067 -17.84467 -17.69495 -17.05293 -16.87811 -16.72483 -16.59098 -16.25341 -16.16265 -16.07362 -15.72858 -15.32903 -14.80703 -14.51631 -14.32587 -14.02404 -13.80904 -13.65125 -13.46409 -13.29411 -13.19502 -13.13214 -13.02702 -12.96302 -12.80448 -12.53700 -12.40255 -12.26823 -12.26250 -11.98003 -11.79932 -11.68487 -11.07919 -10.68352 -10.60227 -10.57875 -10.07728 -9.37725 -8.11248 -6.25389 -0.56303 -0.32622 0.02059 1.46015 1.48281 1.55423 1.91767 2.04675 2.26543 2.47498 2.74946 2.85209 3.09982 3.19154 3.39377 3.64884 3.74681 3.96654 3.98383 4.12881 4.22992 4.35424 4.36557 4.48813 4.53374 4.55765 4.59616 4.71633 4.74765 4.84027 4.88189 4.90757 4.93777 5.10874 5.15969 5.51308 5.59503 5.72566 5.98302 6.08155 6.12418 6.26178 6.44170 6.85519 7.43868 8.95437 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.007226 B = 0.005666 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3874.167247 B = 4940.651391 C = 6237.558157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.055 3.945 4 C 0.043 3.957 5 O -0.315 6.315 6 C 0.218 3.782 7 C -0.194 4.194 8 C -0.046 4.046 9 C 0.026 3.974 10 F -0.140 7.140 11 C -0.037 4.037 12 C -0.699 4.699 13 S 2.707 3.293 14 O -0.978 6.978 15 O -0.994 6.994 16 N -1.091 6.091 17 C 0.281 3.719 18 H 0.020 0.980 19 C -0.149 4.149 20 C -0.531 4.531 21 H 0.070 0.930 22 C 0.017 3.983 23 N -0.918 5.918 24 Si 0.959 3.041 25 H -0.266 1.266 26 H -0.289 1.289 27 H -0.271 1.271 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.188 0.812 36 H 0.187 0.813 37 H 0.151 0.849 38 H 0.416 0.584 39 H 0.063 0.937 40 H 0.029 0.971 41 H 0.042 0.958 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 -2.731 17.196 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.022 4.022 4 C -0.030 4.030 5 O -0.227 6.227 6 C 0.169 3.831 7 C -0.212 4.212 8 C -0.065 4.065 9 C 0.006 3.994 10 F -0.119 7.119 11 C -0.057 4.057 12 C -0.787 4.787 13 S 2.797 3.203 14 O -0.968 6.968 15 O -0.984 6.984 16 N -0.852 5.852 17 C 0.176 3.824 18 H 0.037 0.963 19 C -0.209 4.209 20 C -0.570 4.570 21 H 0.088 0.912 22 C -0.183 4.183 23 N -0.557 5.557 24 Si 0.785 3.215 25 H -0.191 1.191 26 H -0.214 1.214 27 H -0.196 1.196 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.206 0.794 36 H 0.204 0.796 37 H 0.169 0.831 38 H 0.251 0.749 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.061 -3.712 16.630 17.312 hybrid contribution 0.156 1.497 0.079 1.507 sum -2.905 -2.215 16.709 17.104 Atomic orbital electron populations 1.22898 0.79584 1.03629 1.00876 1.87943 1.21471 1.28356 1.95641 1.22801 0.90943 0.85449 1.02965 1.23482 0.96239 1.00929 0.82370 1.86206 1.20791 1.77585 1.38131 1.18485 0.84524 0.88391 0.91724 1.21618 0.91823 1.05977 1.01822 1.21620 0.97588 0.92468 0.94792 1.17669 0.78112 1.06058 0.97571 1.91488 1.32867 1.92622 1.94910 1.20819 0.90323 0.95409 0.99190 1.29926 1.12344 1.20931 1.15514 1.01130 0.73054 0.72960 0.73140 1.93538 1.57067 1.71812 1.74428 1.93510 1.75606 1.76980 1.52312 1.55249 1.21204 1.39064 1.69640 1.18233 0.89216 0.87013 0.87941 0.96251 1.22136 1.00456 0.98954 0.99372 1.21513 1.13863 0.90385 1.31230 0.91160 1.25693 0.95341 1.02931 0.94298 1.70031 1.18444 1.32274 1.34936 0.85594 0.78179 0.79085 0.78678 1.19125 1.21448 1.19592 0.91745 0.94152 0.89228 0.87187 0.92384 0.88755 0.86949 0.79447 0.79606 0.83114 0.74888 0.91834 0.95241 0.93886 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -10.62 10.68 -145.42 -1.55 -12.18 16 3 C 0.05 1.07 6.32 71.98 0.45 1.52 16 4 C 0.04 0.88 5.12 71.98 0.37 1.25 16 5 O -0.31 -9.91 8.94 -77.26 -0.69 -10.60 16 6 C 0.22 7.02 6.63 22.49 0.15 7.17 16 7 C -0.19 -4.52 9.03 22.36 0.20 -4.32 16 8 C -0.05 -1.06 10.02 22.30 0.22 -0.84 16 9 C 0.03 0.79 7.30 22.37 0.16 0.95 16 10 F -0.14 -4.18 17.27 44.97 0.78 -3.41 16 11 C -0.04 -1.33 9.52 22.30 0.21 -1.12 16 12 C -0.70 -26.26 5.71 22.36 0.13 -26.14 16 13 S 2.71 113.23 5.22 -56.49 -0.29 112.94 16 14 O -0.98 -42.74 17.35 -123.21 -2.14 -44.88 16 15 O -0.99 -45.88 16.17 -128.00 -2.07 -47.95 16 16 N -1.09 -46.49 5.47 -172.52 -0.94 -47.43 16 17 C 0.28 13.90 2.66 44.25 0.12 14.01 16 18 H 0.02 1.06 7.83 -2.39 -0.02 1.04 16 19 C -0.15 -7.40 9.35 71.98 0.67 -6.73 16 20 C -0.53 -27.05 8.69 25.60 0.22 -26.83 16 21 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 22 C 0.02 0.90 5.33 84.65 0.45 1.35 16 23 N -0.92 -50.69 11.69 21.45 0.25 -50.44 16 24 Si 0.96 40.54 29.54 68.60 2.03 42.57 16 25 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 26 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.09 1.52 7.63 -2.38 -0.02 1.51 16 34 H 0.11 1.61 7.71 -2.39 -0.02 1.59 16 35 H 0.19 2.58 6.33 -2.91 -0.02 2.56 16 36 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.15 5.39 7.34 -2.91 -0.02 5.36 16 38 H 0.42 16.21 8.82 -96.74 -0.85 15.35 16 39 H 0.06 3.38 6.49 -2.38 -0.02 3.37 16 40 H 0.03 1.39 7.56 -2.39 -0.02 1.38 16 41 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 Total: -1.00 -72.67 373.05 0.19 -72.48 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.21 Total: 26.87 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 4.61 Total: -37.97 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -0.69 Total: -97.87 kcal Atomic # 8 Polarization: -109.16 SS G_CDS: -6.45 Total: -115.61 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.41 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 113.23 SS G_CDS: -0.29 Total: 112.94 kcal Total: -72.67 0.19 -72.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190587083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.984 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds