Wall clock time and date at job start Wed Apr 1 2020 04:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00517 * 2 1 4 4 C 1.38731 * 120.06053 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94588 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05533 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94381 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47230 * 90.00223 * 7 6 5 9 9 S 1.65592 * 120.00146 * 162.40934 * 8 7 6 10 10 O 1.42097 * 106.40299 * 310.76634 * 9 8 7 11 11 O 1.42104 * 106.40083 * 177.84423 * 9 8 7 12 12 C 1.76200 * 107.21556 * 64.30540 * 9 8 7 13 13 C 1.37647 * 120.12992 * 112.88075 * 12 9 8 14 14 C 1.38609 * 120.24947 * 180.31606 * 13 12 9 15 15 C 1.38660 * 120.50124 * 359.67665 * 14 13 12 16 16 C 1.37593 * 120.24773 * 359.97438 * 15 14 13 17 17 C 1.40700 * 120.12943 * 292.57118 * 12 9 8 18 18 C 1.41391 * 120.23923 * 359.97438 * 17 12 9 19 19 H 1.07999 * 120.00110 * 317.26106 * 18 17 12 20 20 C 1.39946 * 120.00061 * 137.26817 * 18 17 12 21 21 N 1.30820 * 120.00188 * 152.67273 * 20 18 17 22 22 Si 1.86802 * 119.99588 * 332.67386 * 20 18 17 23 23 H 1.48497 * 109.46952 * 268.47425 * 22 20 18 24 24 H 1.48498 * 109.47242 * 28.47963 * 22 20 18 25 25 H 1.48509 * 109.46611 * 148.47844 * 22 20 18 26 26 C 1.38271 * 120.11230 * 0.25042 * 6 5 4 27 27 C 1.38143 * 120.05526 * 359.45646 * 26 6 5 28 28 H 1.09009 * 109.46950 * 300.00327 * 1 2 3 29 29 H 1.09002 * 109.47080 * 59.99862 * 1 2 3 30 30 H 1.08993 * 109.47391 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.02363 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.97231 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47216 * 330.00116 * 7 6 5 34 34 H 1.09003 * 109.46980 * 210.00005 * 7 6 5 35 35 H 0.96997 * 119.99429 * 342.41489 * 8 7 6 36 36 H 1.08000 * 119.87090 * 0.02562 * 13 12 9 37 37 H 1.08001 * 119.74947 * 179.68933 * 14 13 12 38 38 H 1.07997 * 119.87606 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.12924 * 180.02562 * 16 15 14 40 40 H 0.97001 * 119.99821 * 179.97438 * 21 20 18 41 41 H 1.08003 * 119.97149 * 179.70356 * 26 6 5 42 42 H 1.07995 * 120.03095 * 180.24863 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3021 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2085 5.4545 -1.3781 9 16 4.5329 7.0458 -1.7018 10 8 3.5459 7.8040 -1.0162 11 8 4.7461 7.1346 -3.1039 12 6 6.0741 7.4294 -0.9388 13 6 7.1746 7.7206 -1.7126 14 6 8.3898 8.0164 -1.1152 15 6 8.5103 8.0292 0.2661 16 6 7.4217 7.7483 1.0595 17 6 6.1830 7.4458 0.4638 18 6 5.0576 7.1553 1.2689 19 1 4.0921 7.5683 1.0166 20 6 5.1948 6.3328 2.3928 21 7 4.3787 6.4685 3.4063 22 14 6.5432 5.0411 2.4458 23 1 6.0187 3.7561 1.9177 24 1 7.6892 5.4875 1.6136 25 1 6.9934 4.8530 3.8484 26 6 1.9212 3.6047 0.0068 27 6 1.2916 2.3751 0.0002 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0209 0.3798 0.0005 32 1 5.1346 2.5749 0.0011 33 1 4.9440 4.9377 0.5168 34 1 3.3581 5.7459 0.5169 35 1 4.1654 4.8111 -2.1027 36 1 7.0920 7.7139 -2.7895 37 1 9.2494 8.2387 -1.7301 38 1 9.4619 8.2614 0.7210 39 1 7.5176 7.7593 2.1352 40 1 4.4736 5.8982 4.1851 41 1 1.3344 4.5114 0.0121 42 1 0.2130 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230530357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:54 Heat of formation + Delta-G solvation = -62.406427 kcal Electronic energy + Delta-G solvation = -28667.515492 eV Core-core repulsion = 24704.756497 eV Total energy + Delta-G solvation = -3962.758995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.10195 -38.00491 -37.70340 -36.34473 -34.92320 -34.65018 -33.67464 -31.03207 -30.71859 -30.09915 -30.05075 -27.56947 -25.67135 -24.56434 -22.55456 -22.00628 -21.25963 -20.92168 -18.58677 -18.16520 -17.81424 -17.10615 -16.50544 -16.16459 -15.84727 -15.75061 -15.32796 -14.86178 -14.46012 -14.30925 -13.94959 -13.87334 -13.52540 -13.39580 -13.30980 -13.07132 -12.62607 -12.45681 -12.19713 -12.09125 -11.95175 -11.74459 -11.33660 -11.24782 -11.18649 -11.09399 -10.91799 -10.80863 -10.72318 -10.64886 -10.27386 -10.11148 -9.50043 -9.34202 -8.90208 -8.69989 -8.25725 -8.05027 -7.69872 -7.21498 -4.83591 1.29622 1.45036 1.65877 2.05892 2.49072 2.88915 2.98711 3.07320 3.20901 3.75172 3.76531 4.10688 4.19942 4.61325 4.80024 4.92528 4.99111 5.01750 5.03457 5.10544 5.28676 5.44413 5.49472 5.54828 5.72109 5.82149 5.94300 5.99741 6.12044 6.16535 6.26696 6.37132 6.45487 6.48991 6.63735 6.66830 6.84902 6.89256 6.94023 7.07593 7.22588 7.38198 7.44017 7.57085 7.65484 7.81937 8.20151 8.33176 8.53667 9.76204 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.004282 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.136553 B = 6537.306630 C = 7515.862147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.155 4.155 5 C -0.068 4.068 6 C -0.125 4.125 7 C 0.167 3.833 8 N -1.116 6.116 9 S 2.707 3.293 10 O -0.967 6.967 11 O -0.997 6.997 12 C -0.762 4.762 13 C 0.006 3.994 14 C -0.246 4.246 15 C -0.059 4.059 16 C -0.198 4.198 17 C 0.166 3.834 18 C -0.497 4.497 19 H 0.135 0.865 20 C 0.103 3.897 21 N -0.769 5.769 22 Si 0.852 3.148 23 H -0.253 1.253 24 H -0.224 1.224 25 H -0.274 1.274 26 C -0.060 4.060 27 C -0.210 4.210 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.407 0.593 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.290 0.710 41 H 0.130 0.870 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 -10.748 -2.746 11.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.076 3.924 4 C -0.174 4.174 5 C -0.086 4.086 6 C -0.126 4.126 7 C 0.042 3.958 8 N -0.873 5.873 9 S 2.804 3.196 10 O -0.957 6.957 11 O -0.988 6.988 12 C -0.856 4.856 13 C -0.014 4.014 14 C -0.266 4.266 15 C -0.078 4.078 16 C -0.218 4.218 17 C 0.161 3.839 18 C -0.524 4.524 19 H 0.152 0.848 20 C -0.122 4.122 21 N -0.390 5.390 22 Si 0.674 3.326 23 H -0.178 1.178 24 H -0.146 1.146 25 H -0.199 1.199 26 C -0.079 4.079 27 C -0.229 4.229 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.239 0.761 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.148 0.852 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.908 -10.280 -2.808 11.350 hybrid contribution 1.022 -0.877 0.513 1.441 sum -2.886 -11.156 -2.295 11.750 Atomic orbital electron populations 1.23021 0.78660 1.03605 1.01427 1.86040 1.21195 1.27243 1.88992 1.19028 0.92356 0.83974 0.97082 1.20370 0.91271 0.98484 1.07236 1.21010 1.00166 0.91010 0.96459 1.20182 0.93776 0.95709 1.02966 1.20790 1.00855 0.92289 0.81825 1.55589 1.88932 1.28768 1.13992 1.00900 0.74652 0.72145 0.71939 1.93504 1.58659 1.68489 1.75003 1.93463 1.87596 1.86200 1.31524 1.30125 1.19761 1.31371 1.04352 1.20399 0.91749 0.91294 0.97912 1.20572 0.97142 1.14417 0.94457 1.20908 0.96963 0.95880 0.94049 1.21382 0.94425 1.07686 0.98275 1.17097 0.92422 0.85147 0.89234 1.20221 0.98506 1.27272 1.06430 0.84788 1.26071 0.95771 0.97589 0.92727 1.69782 1.34345 1.31657 1.03192 0.87126 0.83940 0.81677 0.79864 1.17833 1.14634 1.19940 1.20998 0.94142 0.97216 0.95538 1.21209 0.99839 0.92310 1.09545 0.92660 0.92699 0.88514 0.85414 0.85215 0.90525 0.87630 0.76101 0.86826 0.88108 0.88292 0.87752 0.89939 0.85187 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.95 10.50 -19.42 -0.20 -4.16 16 3 C 0.12 1.65 6.69 -39.21 -0.26 1.38 16 4 C -0.15 -2.15 9.99 -39.43 -0.39 -2.54 16 5 C -0.07 -1.02 9.69 -39.61 -0.38 -1.40 16 6 C -0.12 -2.03 5.29 -104.60 -0.55 -2.59 16 7 C 0.17 3.13 4.17 -5.19 -0.02 3.10 16 8 N -1.12 -20.05 5.98 -11.65 -0.07 -20.12 16 9 S 2.71 57.19 5.44 -107.50 -0.58 56.61 16 10 O -0.97 -23.07 15.08 -57.17 -0.86 -23.93 16 11 O -1.00 -21.82 16.97 -57.17 -0.97 -22.79 16 12 C -0.76 -17.09 5.94 -38.87 -0.23 -17.32 16 13 C 0.01 0.13 9.54 -39.66 -0.38 -0.25 16 14 C -0.25 -4.89 10.05 -39.29 -0.39 -5.28 16 15 C -0.06 -1.20 10.02 -39.66 -0.40 -1.60 16 16 C -0.20 -4.41 6.92 -38.87 -0.27 -4.68 16 17 C 0.17 3.89 4.59 -106.82 -0.49 3.40 16 18 C -0.50 -11.98 5.13 -37.74 -0.19 -12.17 16 19 H 0.13 3.53 5.38 -52.49 -0.28 3.25 16 20 C 0.10 2.35 4.23 -17.34 -0.07 2.27 16 21 N -0.77 -18.04 13.93 55.55 0.77 -17.27 16 22 Si 0.85 17.16 24.37 -169.99 -4.14 13.01 16 23 H -0.25 -4.75 6.95 56.52 0.39 -4.36 16 24 H -0.22 -4.61 5.63 56.52 0.32 -4.29 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 C -0.06 -0.90 9.69 -39.60 -0.38 -1.28 16 27 C -0.21 -2.78 9.04 -39.43 -0.36 -3.13 16 28 H 0.05 0.42 7.66 -51.92 -0.40 0.02 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.08 1.51 3.17 -51.93 -0.16 1.34 16 34 H 0.11 2.17 5.88 -51.93 -0.31 1.87 16 35 H 0.41 6.18 8.66 -34.47 -0.30 5.88 16 36 H 0.11 2.19 7.32 -52.49 -0.38 1.81 16 37 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.10 2.24 7.04 -52.49 -0.37 1.87 16 40 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 41 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -29.14 348.56 -9.29 -38.43 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -4.69 Total: 15.84 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: -3.79 Total: -40.87 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.70 Total: -37.39 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -2.04 Total: -50.88 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -4.14 Total: 13.01 kcal Atomic # 16 Polarization: 57.19 SS G_CDS: -0.58 Total: 56.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.14 -9.29 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230530357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.978 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds