Wall clock time and date at job start Wed Apr 1 2020 04:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00517 * 2 1 4 4 C 1.38731 * 120.06053 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94588 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05533 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94381 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47230 * 90.00223 * 7 6 5 9 9 S 1.65592 * 120.00146 * 162.40934 * 8 7 6 10 10 O 1.42097 * 106.40299 * 310.76634 * 9 8 7 11 11 O 1.42104 * 106.40083 * 177.84423 * 9 8 7 12 12 C 1.76200 * 107.21556 * 64.30540 * 9 8 7 13 13 C 1.37647 * 120.12992 * 112.88075 * 12 9 8 14 14 C 1.38609 * 120.24947 * 180.31606 * 13 12 9 15 15 C 1.38660 * 120.50124 * 359.67665 * 14 13 12 16 16 C 1.37593 * 120.24773 * 359.97438 * 15 14 13 17 17 C 1.40700 * 120.12943 * 292.57118 * 12 9 8 18 18 C 1.41391 * 120.23923 * 359.97438 * 17 12 9 19 19 H 1.07999 * 120.00110 * 317.26106 * 18 17 12 20 20 C 1.39946 * 120.00061 * 137.26817 * 18 17 12 21 21 N 1.30820 * 120.00188 * 152.67273 * 20 18 17 22 22 Si 1.86802 * 119.99588 * 332.67386 * 20 18 17 23 23 H 1.48497 * 109.46952 * 268.47425 * 22 20 18 24 24 H 1.48498 * 109.47242 * 28.47963 * 22 20 18 25 25 H 1.48509 * 109.46611 * 148.47844 * 22 20 18 26 26 C 1.38271 * 120.11230 * 0.25042 * 6 5 4 27 27 C 1.38143 * 120.05526 * 359.45646 * 26 6 5 28 28 H 1.09009 * 109.46950 * 300.00327 * 1 2 3 29 29 H 1.09002 * 109.47080 * 59.99862 * 1 2 3 30 30 H 1.08993 * 109.47391 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.02363 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.97231 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47216 * 330.00116 * 7 6 5 34 34 H 1.09003 * 109.46980 * 210.00005 * 7 6 5 35 35 H 0.96997 * 119.99429 * 342.41489 * 8 7 6 36 36 H 1.08000 * 119.87090 * 0.02562 * 13 12 9 37 37 H 1.08001 * 119.74947 * 179.68933 * 14 13 12 38 38 H 1.07997 * 119.87606 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.12924 * 180.02562 * 16 15 14 40 40 H 0.97001 * 119.99821 * 179.97438 * 21 20 18 41 41 H 1.08003 * 119.97149 * 179.70356 * 26 6 5 42 42 H 1.07995 * 120.03095 * 180.24863 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3021 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2085 5.4545 -1.3781 9 16 4.5329 7.0458 -1.7018 10 8 3.5459 7.8040 -1.0162 11 8 4.7461 7.1346 -3.1039 12 6 6.0741 7.4294 -0.9388 13 6 7.1746 7.7206 -1.7126 14 6 8.3898 8.0164 -1.1152 15 6 8.5103 8.0292 0.2661 16 6 7.4217 7.7483 1.0595 17 6 6.1830 7.4458 0.4638 18 6 5.0576 7.1553 1.2689 19 1 4.0921 7.5683 1.0166 20 6 5.1948 6.3328 2.3928 21 7 4.3787 6.4685 3.4063 22 14 6.5432 5.0411 2.4458 23 1 6.0187 3.7561 1.9177 24 1 7.6892 5.4875 1.6136 25 1 6.9934 4.8530 3.8484 26 6 1.9212 3.6047 0.0068 27 6 1.2916 2.3751 0.0002 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0209 0.3798 0.0005 32 1 5.1346 2.5749 0.0011 33 1 4.9440 4.9377 0.5168 34 1 3.3581 5.7459 0.5169 35 1 4.1654 4.8111 -2.1027 36 1 7.0920 7.7139 -2.7895 37 1 9.2494 8.2387 -1.7301 38 1 9.4619 8.2614 0.7210 39 1 7.5176 7.7593 2.1352 40 1 4.4736 5.8982 4.1851 41 1 1.3344 4.5114 0.0121 42 1 0.2130 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230530357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:53 Heat of formation + Delta-G solvation = -82.245163 kcal Electronic energy + Delta-G solvation = -28668.375764 eV Core-core repulsion = 24704.756497 eV Total energy + Delta-G solvation = -3963.619267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.12259 -39.60859 -38.85760 -38.08371 -36.70170 -36.14485 -35.30539 -32.41521 -32.10605 -31.73428 -31.26202 -28.38963 -27.32193 -25.90289 -23.67562 -23.60456 -22.89899 -22.14034 -20.23734 -19.55715 -19.13646 -18.72158 -18.07282 -17.43387 -17.18241 -16.91669 -16.62997 -16.27286 -16.02872 -15.75059 -15.27569 -15.15702 -14.97480 -14.89468 -14.65159 -14.51419 -13.96059 -13.74100 -13.71859 -13.54614 -13.22599 -13.03581 -12.99428 -12.88162 -12.82133 -12.67274 -12.38593 -12.14945 -11.96091 -11.93736 -11.75925 -11.70372 -11.19365 -11.04455 -10.24816 -9.99488 -9.90367 -9.40035 -9.15134 -8.93798 -6.61666 -0.25451 0.34922 0.37245 0.40425 0.81469 1.28817 1.36555 1.45877 2.12862 2.32588 2.35599 2.49816 2.80749 2.91705 3.31759 3.70860 3.81226 3.89949 3.95855 4.24587 4.27098 4.37697 4.40587 4.41269 4.45027 4.58471 4.64237 4.66876 4.76049 4.80138 4.81365 4.96937 5.07521 5.15979 5.25476 5.27007 5.34128 5.42089 5.58694 5.68972 5.74722 5.79119 5.88870 6.13180 6.28116 6.39953 6.42100 6.60284 6.75810 8.09426 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.004282 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.136553 B = 6537.306630 C = 7515.862147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.122 3.878 4 C -0.158 4.158 5 C -0.073 4.073 6 C -0.145 4.145 7 C 0.174 3.826 8 N -1.102 6.102 9 S 2.721 3.279 10 O -1.000 7.000 11 O -1.005 7.005 12 C -0.776 4.776 13 C -0.009 4.009 14 C -0.237 4.237 15 C -0.056 4.056 16 C -0.220 4.220 17 C 0.151 3.849 18 C -0.516 4.516 19 H 0.099 0.901 20 C 0.084 3.916 21 N -0.805 5.805 22 Si 0.891 3.109 23 H -0.234 1.234 24 H -0.228 1.228 25 H -0.268 1.268 26 C -0.072 4.072 27 C -0.206 4.206 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.147 0.853 32 H 0.136 0.864 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.420 0.580 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.105 0.895 40 H 0.297 0.703 41 H 0.128 0.872 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 -12.770 -3.532 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.077 3.923 4 C -0.176 4.176 5 C -0.092 4.092 6 C -0.147 4.147 7 C 0.050 3.950 8 N -0.862 5.862 9 S 2.817 3.183 10 O -0.990 6.990 11 O -0.996 6.996 12 C -0.869 4.869 13 C -0.029 4.029 14 C -0.257 4.257 15 C -0.074 4.074 16 C -0.240 4.240 17 C 0.147 3.853 18 C -0.543 4.543 19 H 0.117 0.883 20 C -0.137 4.137 21 N -0.428 5.428 22 Si 0.710 3.290 23 H -0.158 1.158 24 H -0.150 1.150 25 H -0.193 1.193 26 C -0.091 4.091 27 C -0.224 4.224 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.256 0.744 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.671 -12.306 -3.614 13.101 hybrid contribution 0.607 -0.248 0.658 0.928 sum -2.065 -12.554 -2.957 13.062 Atomic orbital electron populations 1.23360 0.76482 1.05651 1.02244 1.86041 1.23443 1.26376 1.88571 1.19171 0.92547 0.84626 0.95999 1.20584 0.91840 0.98615 1.06586 1.21073 1.00469 0.91020 0.96661 1.20032 0.94433 0.94780 1.05417 1.20538 1.00124 0.93083 0.81305 1.55243 1.88470 1.27933 1.14550 1.00327 0.74123 0.72539 0.71298 1.93467 1.59901 1.70046 1.75613 1.93437 1.87638 1.86674 1.31848 1.30321 1.20564 1.31705 1.04353 1.20744 0.91943 0.91376 0.98810 1.21057 0.97747 1.12037 0.94838 1.21341 0.97782 0.94024 0.94240 1.21526 0.94831 1.08881 0.98776 1.17243 0.92902 0.85505 0.89689 1.19973 0.97444 1.29065 1.07865 0.88304 1.26527 0.97104 0.98180 0.91904 1.69796 1.36019 1.32982 1.03997 0.86546 0.81810 0.80671 0.80011 1.15806 1.15010 1.19342 1.21077 0.93804 0.98124 0.96054 1.21423 1.01212 0.91391 1.08420 0.91953 0.91712 0.86020 0.83525 0.84667 0.91385 0.90450 0.74448 0.85246 0.84422 0.84592 0.87723 0.89158 0.85430 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.27 10.50 -92.40 -0.97 -8.24 16 3 C 0.12 3.09 6.69 22.51 0.15 3.24 16 4 C -0.16 -4.09 9.99 22.36 0.22 -3.87 16 5 C -0.07 -2.14 9.69 22.25 0.22 -1.93 16 6 C -0.14 -4.75 5.29 -19.85 -0.10 -4.86 16 7 C 0.17 6.74 4.17 85.63 0.36 7.09 16 8 N -1.10 -40.43 5.98 -190.78 -1.14 -41.57 16 9 S 2.72 117.67 5.44 -56.49 -0.31 117.37 16 10 O -1.00 -50.26 15.08 -128.00 -1.93 -52.19 16 11 O -1.01 -43.95 16.97 -128.00 -2.17 -46.12 16 12 C -0.78 -34.90 5.94 22.73 0.13 -34.76 16 13 C -0.01 -0.37 9.54 22.22 0.21 -0.15 16 14 C -0.24 -8.65 10.05 22.46 0.23 -8.43 16 15 C -0.06 -2.09 10.02 22.22 0.22 -1.86 16 16 C -0.22 -9.65 6.92 22.73 0.16 -9.49 16 17 C 0.15 7.18 4.59 -21.29 -0.10 7.08 16 18 C -0.52 -25.97 5.13 23.46 0.12 -25.84 16 19 H 0.10 5.61 5.38 -2.91 -0.02 5.60 16 20 C 0.08 3.96 4.23 85.26 0.36 4.32 16 21 N -0.81 -39.29 13.93 21.83 0.30 -38.99 16 22 Si 0.89 35.08 24.37 68.60 1.67 36.75 16 23 H -0.23 -8.39 6.95 99.48 0.69 -7.69 16 24 H -0.23 -9.04 5.63 99.48 0.56 -8.48 16 25 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 26 C -0.07 -2.15 9.69 22.26 0.22 -1.93 16 27 C -0.21 -5.13 9.04 22.37 0.20 -4.93 16 28 H 0.06 0.77 7.66 -2.38 -0.02 0.75 16 29 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 30 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 32 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.07 2.73 3.17 -2.39 -0.01 2.72 16 34 H 0.08 3.42 5.88 -2.39 -0.01 3.41 16 35 H 0.42 12.80 8.66 -96.75 -0.84 11.96 16 36 H 0.13 4.74 7.32 -2.91 -0.02 4.72 16 37 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 38 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.10 4.47 7.04 -2.91 -0.02 4.45 16 40 H 0.30 13.04 8.30 -92.71 -0.77 12.27 16 41 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 42 H 0.15 2.87 6.30 -2.91 -0.02 2.86 16 Total: -1.00 -63.85 348.56 -0.75 -64.60 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: 0.08 Total: 43.38 kcal Atomic # 6 Polarization: -78.69 SS G_CDS: 3.71 Total: -74.98 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -0.84 Total: -80.56 kcal Atomic # 8 Polarization: -101.48 SS G_CDS: -5.07 Total: -106.55 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 1.67 Total: 36.75 kcal Atomic # 16 Polarization: 117.67 SS G_CDS: -0.31 Total: 117.37 kcal Total: -63.85 -0.75 -64.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230530357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.642 kcal (2) G-P(sol) polarization free energy of solvation -63.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds