Wall clock time and date at job start Wed Apr 1 2020 04:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48498 * 109.46915 * 269.99710 * 3 2 1 5 5 H 1.48500 * 109.47211 * 29.99545 * 3 2 1 6 6 H 1.48497 * 109.47114 * 149.99743 * 3 2 1 7 7 C 1.37873 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00352 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99781 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40436 * 66.45998 * 9 7 2 11 11 O 1.42100 * 106.40545 * 293.53876 * 9 7 2 12 12 N 1.65608 * 107.21799 * 180.02562 * 9 7 2 13 13 C 1.46496 * 119.99713 * 65.00226 * 12 9 7 14 14 C 1.50707 * 109.46938 * 165.00201 * 13 12 9 15 15 C 1.38288 * 119.96770 * 270.01853 * 14 13 12 16 16 C 1.38241 * 120.10640 * 180.02562 * 15 14 13 17 17 C 1.38169 * 120.05773 * 359.97438 * 16 15 14 18 18 C 1.38703 * 119.94277 * 359.97438 * 17 16 15 19 19 O 1.35903 * 120.05406 * 180.29438 * 18 17 16 20 20 C 1.42905 * 117.00064 * 359.73121 * 19 18 17 21 21 C 1.50697 * 109.46904 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99697 * 269.72499 * 21 20 19 23 23 C 1.38243 * 119.99509 * 179.77027 * 22 21 20 24 24 C 1.38231 * 120.00328 * 0.50652 * 23 22 21 25 25 C 1.38237 * 119.99811 * 359.74673 * 24 23 22 26 26 C 1.38231 * 120.00276 * 90.00177 * 21 20 19 27 27 C 1.38116 * 119.97093 * 89.99511 * 14 13 12 28 28 H 0.97003 * 119.99875 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99961 * 245.00051 * 12 9 7 30 30 H 1.08996 * 109.47696 * 44.99794 * 13 12 9 31 31 H 1.09003 * 109.46762 * 284.99666 * 13 12 9 32 32 H 1.07992 * 119.94652 * 0.02562 * 15 14 13 33 33 H 1.08005 * 119.97392 * 180.02562 * 16 15 14 34 34 H 1.08008 * 120.02679 * 180.02562 * 17 16 15 35 35 H 1.08997 * 109.46692 * 299.99867 * 20 19 18 36 36 H 1.08996 * 109.46777 * 59.99891 * 20 19 18 37 37 H 1.07994 * 120.00531 * 0.02562 * 22 21 20 38 38 H 1.08006 * 119.99409 * 180.23084 * 23 22 21 39 39 H 1.07995 * 119.99990 * 179.72405 * 24 23 22 40 40 H 1.07996 * 119.99837 * 179.97438 * 25 24 23 41 41 H 1.07998 * 119.99843 * 0.02562 * 26 21 20 42 42 H 1.08000 * 120.03192 * 0.02696 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1236 -2.7199 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4509 -2.7950 1.2500 12 7 2.2484 -3.9354 0.0019 13 6 3.1384 -4.1083 1.1526 14 6 3.7939 -5.4635 1.0815 15 6 3.1896 -6.5552 1.6775 16 6 3.7886 -7.7995 1.6145 17 6 4.9927 -7.9554 0.9550 18 6 5.6002 -6.8621 0.3555 19 8 6.7816 -7.0139 -0.2989 20 6 7.3446 -8.3271 -0.3251 21 6 8.6432 -8.3017 -1.0894 22 6 8.6471 -8.5294 -2.4529 23 6 9.8378 -8.5013 -3.1548 24 6 11.0256 -8.2561 -2.4915 25 6 11.0221 -8.0336 -1.1272 26 6 9.8309 -8.0564 -0.4262 27 6 4.9973 -5.6140 0.4206 28 1 -0.4850 0.8401 -0.0004 29 1 2.3178 -4.5328 -0.7591 30 1 2.5607 -4.0320 2.0737 31 1 3.9045 -3.3330 1.1390 32 1 2.2483 -6.4355 2.1931 33 1 3.3145 -8.6508 2.0804 34 1 5.4600 -8.9278 0.9057 35 1 7.5295 -8.6635 0.6950 36 1 6.6497 -9.0106 -0.8128 37 1 7.7197 -8.7250 -2.9705 38 1 9.8405 -8.6755 -4.2207 39 1 11.9562 -8.2386 -3.0392 40 1 11.9501 -7.8424 -0.6089 41 1 9.8283 -7.8834 0.6399 42 1 5.4689 -4.7611 -0.0447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309836268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:25 Heat of formation + Delta-G solvation = -81.426823 kcal Electronic energy + Delta-G solvation = -26303.863676 eV Core-core repulsion = 22340.279895 eV Total energy + Delta-G solvation = -3963.583781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42269 -39.41885 -37.74512 -35.20744 -34.48048 -33.91288 -33.04394 -32.62041 -31.28635 -30.75947 -29.77056 -26.85540 -26.10156 -25.18814 -22.97609 -22.54158 -22.05850 -20.82652 -19.00764 -18.03193 -17.35252 -17.34026 -16.28017 -16.19976 -16.12501 -15.97245 -15.46182 -15.12637 -14.87271 -14.72171 -14.36798 -13.93565 -13.78313 -13.69050 -13.33391 -13.23613 -13.05642 -12.64661 -12.47925 -12.39271 -11.96057 -11.58994 -11.52513 -11.42650 -11.20255 -11.17784 -11.08097 -10.92853 -10.57905 -10.34343 -10.25476 -10.15811 -9.29669 -9.25012 -9.21875 -9.00458 -8.87226 -8.47106 -8.21603 -6.67182 -5.28784 0.83194 1.02726 1.24636 1.45162 2.41215 2.96560 3.09375 3.16159 3.22662 3.60358 3.75267 4.10375 4.32695 4.39613 4.61378 4.67141 4.71179 4.75383 4.80619 4.81842 4.90804 4.93463 5.10151 5.13031 5.24963 5.37390 5.40895 5.53282 5.55875 5.65010 5.75517 5.89725 6.04270 6.05268 6.12484 6.12588 6.17567 6.25459 6.41887 6.50120 6.58605 6.67868 6.75861 6.87730 7.33026 7.35195 7.92433 8.01399 8.92196 10.26921 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.002200 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.036313 B =12722.772066 C =13965.279802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.716 3.284 10 O -1.006 7.006 11 O -1.007 7.007 12 N -1.132 6.132 13 C 0.165 3.835 14 C -0.048 4.048 15 C -0.139 4.139 16 C -0.083 4.083 17 C -0.211 4.211 18 C 0.123 3.877 19 O -0.309 6.309 20 C 0.102 3.898 21 C -0.095 4.095 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.095 4.095 27 C -0.135 4.135 28 H 0.290 0.710 29 H 0.403 0.597 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.879 -18.742 -0.164 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.816 3.184 10 O -0.996 6.996 11 O -0.997 6.997 12 N -0.887 5.887 13 C 0.038 3.962 14 C -0.049 4.049 15 C -0.158 4.158 16 C -0.102 4.102 17 C -0.230 4.230 18 C 0.078 3.922 19 O -0.223 6.223 20 C 0.027 3.973 21 C -0.095 4.095 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.130 4.130 25 C -0.142 4.142 26 C -0.114 4.114 27 C -0.155 4.155 28 H 0.101 0.899 29 H 0.234 0.766 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.848 -18.523 -0.080 26.426 hybrid contribution 1.051 0.702 -0.312 1.302 sum 19.899 -17.821 -0.392 26.715 Atomic orbital electron populations 1.69901 1.06770 1.30680 1.40176 1.24745 0.94455 1.00817 0.88517 0.86167 0.80164 0.80101 0.79132 1.19257 1.20033 1.18656 1.30549 1.06118 1.11858 1.66783 0.87935 1.00386 0.72042 0.73191 0.72818 1.93376 1.73042 1.87612 1.45590 1.93353 1.72822 1.87504 1.45987 1.56028 1.55507 1.51102 1.26040 1.20015 0.93401 0.92423 0.90351 1.19885 0.93408 0.95973 0.95644 1.21122 1.00784 0.92158 1.01708 1.20913 0.94360 0.97363 0.97514 1.21189 0.98938 0.97962 1.04959 1.18939 0.85610 0.94269 0.93335 1.86157 1.34225 1.30753 1.71175 1.21544 0.92069 0.83883 0.99777 1.19517 0.93575 1.02269 0.94158 1.21124 0.98520 0.98366 0.93288 1.21185 0.92481 1.00383 1.00109 1.21247 0.98266 0.98783 0.94681 1.21173 0.98043 1.00465 0.94541 1.21103 0.92002 0.98021 1.00228 1.20404 0.96255 0.95622 1.03173 0.89927 0.76615 0.89528 0.91090 0.85297 0.85787 0.85827 0.91174 0.91148 0.85701 0.85705 0.85879 0.85746 0.85762 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.91 13.19 55.43 0.73 -24.18 16 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -1.02 -27.88 9.72 30.60 0.30 -27.58 16 8 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 9 S 2.72 71.51 5.02 -107.50 -0.54 70.97 16 10 O -1.01 -29.53 18.02 -57.17 -1.03 -30.56 16 11 O -1.01 -29.05 17.49 -57.17 -1.00 -30.05 16 12 N -1.13 -22.46 5.99 -11.66 -0.07 -22.53 16 13 C 0.16 2.81 6.34 -5.19 -0.03 2.78 16 14 C -0.05 -0.69 5.27 -104.65 -0.55 -1.25 16 15 C -0.14 -1.84 9.70 -39.56 -0.38 -2.22 16 16 C -0.08 -0.93 10.04 -39.61 -0.40 -1.33 16 17 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 18 C 0.12 1.57 6.69 -39.22 -0.26 1.30 16 19 O -0.31 -3.77 10.12 -19.43 -0.20 -3.97 16 20 C 0.10 0.90 4.87 36.00 0.18 1.08 16 21 C -0.10 -0.85 5.51 -104.63 -0.58 -1.43 16 22 C -0.09 -0.80 9.70 -39.58 -0.38 -1.19 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 24 C -0.11 -0.79 10.05 -39.58 -0.40 -1.19 16 25 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 26 C -0.10 -0.79 9.70 -39.58 -0.38 -1.17 16 27 C -0.14 -1.89 9.64 -39.44 -0.38 -2.27 16 28 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.40 7.18 8.64 -34.48 -0.30 6.88 16 30 H 0.09 1.50 7.69 -51.93 -0.40 1.10 16 31 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 32 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.12 1.04 6.30 -52.48 -0.33 0.71 16 35 H 0.07 0.52 7.61 -51.93 -0.40 0.12 16 36 H 0.07 0.54 7.59 -51.93 -0.39 0.14 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 39 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -36.24 379.02 -11.11 -47.35 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.17 Total: 7.81 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: -4.53 Total: -36.17 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.66 Total: -46.72 kcal Atomic # 8 Polarization: -62.35 SS G_CDS: -2.23 Total: -64.57 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 71.51 SS G_CDS: -0.54 Total: 70.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.24 -11.11 -47.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309836268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.080 kcal (2) G-P(sol) polarization free energy of solvation -36.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds