Wall clock time and date at job start Wed Apr 1 2020 04:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99843 * 2 1 4 4 H 1.48498 * 109.46915 * 269.99710 * 3 2 1 5 5 H 1.48500 * 109.47211 * 29.99545 * 3 2 1 6 6 H 1.48497 * 109.47114 * 149.99743 * 3 2 1 7 7 C 1.37873 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00352 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99781 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40436 * 66.45998 * 9 7 2 11 11 O 1.42100 * 106.40545 * 293.53876 * 9 7 2 12 12 N 1.65608 * 107.21799 * 180.02562 * 9 7 2 13 13 C 1.46496 * 119.99713 * 65.00226 * 12 9 7 14 14 C 1.50707 * 109.46938 * 165.00201 * 13 12 9 15 15 C 1.38288 * 119.96770 * 270.01853 * 14 13 12 16 16 C 1.38241 * 120.10640 * 180.02562 * 15 14 13 17 17 C 1.38169 * 120.05773 * 359.97438 * 16 15 14 18 18 C 1.38703 * 119.94277 * 359.97438 * 17 16 15 19 19 O 1.35903 * 120.05406 * 180.29438 * 18 17 16 20 20 C 1.42905 * 117.00064 * 359.73121 * 19 18 17 21 21 C 1.50697 * 109.46904 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99697 * 269.72499 * 21 20 19 23 23 C 1.38243 * 119.99509 * 179.77027 * 22 21 20 24 24 C 1.38231 * 120.00328 * 0.50652 * 23 22 21 25 25 C 1.38237 * 119.99811 * 359.74673 * 24 23 22 26 26 C 1.38231 * 120.00276 * 90.00177 * 21 20 19 27 27 C 1.38116 * 119.97093 * 89.99511 * 14 13 12 28 28 H 0.97003 * 119.99875 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99961 * 245.00051 * 12 9 7 30 30 H 1.08996 * 109.47696 * 44.99794 * 13 12 9 31 31 H 1.09003 * 109.46762 * 284.99666 * 13 12 9 32 32 H 1.07992 * 119.94652 * 0.02562 * 15 14 13 33 33 H 1.08005 * 119.97392 * 180.02562 * 16 15 14 34 34 H 1.08008 * 120.02679 * 180.02562 * 17 16 15 35 35 H 1.08997 * 109.46692 * 299.99867 * 20 19 18 36 36 H 1.08996 * 109.46777 * 59.99891 * 20 19 18 37 37 H 1.07994 * 120.00531 * 0.02562 * 22 21 20 38 38 H 1.08006 * 119.99409 * 180.23084 * 23 22 21 39 39 H 1.07995 * 119.99990 * 179.72405 * 24 23 22 40 40 H 1.07996 * 119.99837 * 179.97438 * 25 24 23 41 41 H 1.07998 * 119.99843 * 0.02562 * 26 21 20 42 42 H 1.08000 * 120.03192 * 0.02696 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1236 -2.7199 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4509 -2.7950 1.2500 12 7 2.2484 -3.9354 0.0019 13 6 3.1384 -4.1083 1.1526 14 6 3.7939 -5.4635 1.0815 15 6 3.1896 -6.5552 1.6775 16 6 3.7886 -7.7995 1.6145 17 6 4.9927 -7.9554 0.9550 18 6 5.6002 -6.8621 0.3555 19 8 6.7816 -7.0139 -0.2989 20 6 7.3446 -8.3271 -0.3251 21 6 8.6432 -8.3017 -1.0894 22 6 8.6471 -8.5294 -2.4529 23 6 9.8378 -8.5013 -3.1548 24 6 11.0256 -8.2561 -2.4915 25 6 11.0221 -8.0336 -1.1272 26 6 9.8309 -8.0564 -0.4262 27 6 4.9973 -5.6140 0.4206 28 1 -0.4850 0.8401 -0.0004 29 1 2.3178 -4.5328 -0.7591 30 1 2.5607 -4.0320 2.0737 31 1 3.9045 -3.3330 1.1390 32 1 2.2483 -6.4355 2.1931 33 1 3.3145 -8.6508 2.0804 34 1 5.4600 -8.9278 0.9057 35 1 7.5295 -8.6635 0.6950 36 1 6.6497 -9.0106 -0.8128 37 1 7.7197 -8.7250 -2.9705 38 1 9.8405 -8.6755 -4.2207 39 1 11.9562 -8.2386 -3.0392 40 1 11.9501 -7.8424 -0.6089 41 1 9.8283 -7.8834 0.6399 42 1 5.4689 -4.7611 -0.0447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309836268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:24 Heat of formation + Delta-G solvation = -106.206588 kcal Electronic energy + Delta-G solvation = -26304.938208 eV Core-core repulsion = 22340.279895 eV Total energy + Delta-G solvation = -3964.658312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.27907 -40.08006 -38.68616 -37.38614 -36.13145 -35.90781 -35.13840 -33.25883 -31.88859 -31.83101 -30.74179 -28.24288 -27.58627 -26.41484 -23.52772 -23.49756 -22.82743 -21.70091 -21.01687 -19.38805 -19.00412 -18.11962 -17.95325 -17.13060 -16.99155 -16.96102 -16.91464 -16.65748 -15.98739 -15.84670 -15.52034 -15.41163 -15.15468 -14.51259 -14.31197 -14.18720 -14.02500 -13.84454 -13.76342 -13.47124 -13.25316 -13.24164 -13.00150 -12.72786 -12.49700 -12.41825 -12.36616 -12.28902 -12.11394 -11.99418 -11.76185 -11.71663 -11.23603 -11.00930 -10.21922 -9.89197 -9.85995 -9.82976 -9.17186 -8.73955 -7.46496 0.11233 0.24373 0.46240 0.47524 0.54945 1.35768 1.35972 1.52148 2.21885 2.23130 2.59582 2.72229 2.97714 3.12875 3.61691 3.70832 3.80334 3.84078 3.92291 4.07382 4.15557 4.23475 4.25891 4.27960 4.34114 4.38890 4.50233 4.57327 4.60152 4.64344 4.71455 4.81907 5.01973 5.05319 5.09190 5.11729 5.30255 5.31782 5.46748 5.51507 5.58130 5.59429 5.66998 5.78630 5.91780 6.05285 6.34517 6.45619 6.80111 8.22496 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.002200 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.036313 B =12722.772066 C =13965.279802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.069 3.931 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.247 1.247 7 C -1.039 5.039 8 H 0.121 0.879 9 S 2.723 3.277 10 O -1.044 7.044 11 O -1.040 7.040 12 N -1.117 6.117 13 C 0.159 3.841 14 C -0.060 4.060 15 C -0.152 4.152 16 C -0.076 4.076 17 C -0.201 4.201 18 C 0.119 3.881 19 O -0.326 6.326 20 C 0.098 3.902 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.133 4.133 24 C -0.117 4.117 25 C -0.132 4.132 26 C -0.109 4.109 27 C -0.150 4.150 28 H 0.299 0.701 29 H 0.413 0.587 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.129 0.871 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.433 -19.712 -0.035 29.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.170 1.170 7 C -1.172 5.172 8 H 0.139 0.861 9 S 2.824 3.176 10 O -1.035 7.035 11 O -1.030 7.030 12 N -0.875 5.875 13 C 0.034 3.966 14 C -0.061 4.061 15 C -0.171 4.171 16 C -0.094 4.094 17 C -0.220 4.220 18 C 0.074 3.926 19 O -0.241 6.241 20 C 0.024 3.976 21 C -0.113 4.113 22 C -0.129 4.129 23 C -0.151 4.151 24 C -0.135 4.135 25 C -0.150 4.150 26 C -0.127 4.127 27 C -0.169 4.169 28 H 0.109 0.891 29 H 0.247 0.753 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.147 0.853 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.400 -19.524 0.045 28.969 hybrid contribution 0.368 0.841 -0.368 0.989 sum 21.769 -18.683 -0.323 28.688 Atomic orbital electron populations 1.69993 1.08742 1.32299 1.41466 1.26017 0.95386 1.05386 0.87591 0.85121 0.79190 0.74861 0.79939 1.18096 1.18715 1.17009 1.30891 1.07227 1.12492 1.66599 0.86087 0.99814 0.72479 0.73847 0.71482 1.93312 1.74862 1.88389 1.46919 1.93301 1.74420 1.88208 1.47084 1.55421 1.54916 1.49716 1.27483 1.20175 0.92983 0.94773 0.88697 1.19598 0.94044 0.94911 0.97591 1.21265 1.01074 0.92806 1.01970 1.21246 0.94167 0.97325 0.96690 1.21539 0.98474 0.98733 1.03260 1.19000 0.85936 0.94236 0.93414 1.86138 1.33973 1.32891 1.71055 1.21770 0.92224 0.82647 1.00964 1.19664 0.93893 1.03210 0.94557 1.21335 0.99269 0.98820 0.93454 1.21479 0.92409 1.00077 1.01107 1.21587 0.99073 0.97964 0.94873 1.21487 0.98592 0.99967 0.94914 1.21335 0.92250 0.98183 1.00906 1.20395 0.96376 0.96450 1.03702 0.89131 0.75323 0.90262 0.90324 0.85323 0.82674 0.82745 0.89550 0.89873 0.85213 0.84049 0.83744 0.83848 0.84902 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.65 13.19 21.45 0.28 -53.36 16 2 C 0.07 3.86 5.46 84.65 0.46 4.32 16 3 Si 0.99 41.57 29.54 68.60 2.03 43.59 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 6 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 7 C -1.04 -57.22 9.72 67.73 0.66 -56.56 16 8 H 0.12 5.98 7.81 -2.91 -0.02 5.96 16 9 S 2.72 147.31 5.02 -56.49 -0.28 147.03 16 10 O -1.04 -63.30 18.02 -128.00 -2.31 -65.60 16 11 O -1.04 -62.03 17.49 -128.00 -2.24 -64.27 16 12 N -1.12 -45.13 5.99 -190.79 -1.14 -46.27 16 13 C 0.16 5.51 6.34 85.64 0.54 6.06 16 14 C -0.06 -1.73 5.27 -19.88 -0.10 -1.83 16 15 C -0.15 -3.88 9.70 22.28 0.22 -3.66 16 16 C -0.08 -1.51 10.04 22.25 0.22 -1.29 16 17 C -0.20 -3.84 9.04 22.36 0.20 -3.64 16 18 C 0.12 2.85 6.69 22.50 0.15 3.00 16 19 O -0.33 -7.53 10.12 -92.45 -0.94 -8.47 16 20 C 0.10 1.55 4.87 71.23 0.35 1.90 16 21 C -0.11 -1.89 5.51 -19.87 -0.11 -2.00 16 22 C -0.11 -1.76 9.70 22.27 0.22 -1.54 16 23 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 24 C -0.12 -1.45 10.05 22.27 0.22 -1.22 16 25 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 26 C -0.11 -1.65 9.70 22.27 0.22 -1.43 16 27 C -0.15 -4.12 9.64 22.36 0.22 -3.90 16 28 H 0.30 16.09 8.31 -92.71 -0.77 15.32 16 29 H 0.41 14.97 8.64 -96.74 -0.84 14.13 16 30 H 0.08 2.83 7.69 -2.39 -0.02 2.81 16 31 H 0.08 2.56 8.08 -2.39 -0.02 2.54 16 32 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 33 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.16 1.96 6.30 -2.91 -0.02 1.94 16 35 H 0.09 1.05 7.61 -2.39 -0.02 1.03 16 36 H 0.08 1.07 7.59 -2.39 -0.02 1.05 16 37 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -79.45 379.02 -0.48 -79.93 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.21 Total: 32.30 kcal Atomic # 6 Polarization: -68.79 SS G_CDS: 3.91 Total: -64.88 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -0.86 Total: -99.63 kcal Atomic # 8 Polarization: -132.85 SS G_CDS: -5.48 Total: -138.33 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 147.31 SS G_CDS: -0.28 Total: 147.03 kcal Total: -79.45 -0.48 -79.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309836268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.277 kcal (2) G-P(sol) polarization free energy of solvation -79.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds