Wall clock time and date at job start Wed Apr 1 2020 04:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35674 * 117.00211 * 2 1 4 4 C 1.38917 * 119.68694 * 179.72885 * 3 2 1 5 5 C 1.38384 * 119.11158 * 179.70523 * 4 3 2 6 6 C 1.38827 * 118.48528 * 0.55466 * 5 4 3 7 7 C 1.38049 * 119.28782 * 359.73032 * 6 5 4 8 8 C 1.50697 * 119.58014 * 180.02562 * 7 6 5 9 9 S 1.81405 * 109.47065 * 269.97322 * 8 7 6 10 10 O 1.42101 * 108.57867 * 294.49110 * 9 8 7 11 11 O 1.42103 * 108.57567 * 65.51173 * 9 8 7 12 12 C 1.81398 * 101.92297 * 180.02562 * 9 8 7 13 13 C 1.50694 * 109.46895 * 180.02562 * 12 9 8 14 14 C 1.38631 * 119.75181 * 269.72278 * 13 12 9 15 15 C 1.37622 * 120.25401 * 179.72548 * 14 13 12 16 16 C 1.40716 * 119.73941 * 0.56753 * 15 14 13 17 17 C 1.41400 * 120.24372 * 179.68372 * 16 15 14 18 18 H 1.07993 * 120.00193 * 204.41287 * 17 16 15 19 19 C 1.39947 * 119.99839 * 24.40652 * 17 16 15 20 20 N 1.30826 * 119.99691 * 17.85101 * 19 17 16 21 21 Si 1.86799 * 120.00058 * 197.84525 * 19 17 16 22 22 H 1.48504 * 109.46655 * 60.00407 * 21 19 17 23 23 H 1.48504 * 109.47025 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47242 * 300.00664 * 21 19 17 25 25 C 1.40717 * 119.51298 * 359.70877 * 16 15 14 26 26 C 1.37612 * 119.74605 * 359.97438 * 25 16 15 27 27 N 1.31959 * 120.83705 * 359.97438 * 7 6 5 28 28 H 1.09002 * 109.47333 * 300.00244 * 1 2 3 29 29 H 1.09001 * 109.47136 * 59.99975 * 1 2 3 30 30 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.44531 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.75529 * 180.27950 * 5 4 3 33 33 H 1.07998 * 120.35817 * 179.74736 * 6 5 4 34 34 H 1.08996 * 109.47715 * 29.97297 * 8 7 6 35 35 H 1.08998 * 109.47091 * 149.97718 * 8 7 6 36 36 H 1.09005 * 109.46720 * 299.99633 * 12 9 8 37 37 H 1.08995 * 109.47416 * 59.99804 * 12 9 8 38 38 H 1.08000 * 119.87278 * 359.97438 * 14 13 12 39 39 H 1.07996 * 120.13214 * 180.28475 * 15 14 13 40 40 H 0.97008 * 119.99626 * 179.97438 * 20 19 17 41 41 H 1.08001 * 120.12654 * 179.97438 * 25 16 15 42 42 H 1.08002 * 119.87647 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4326 1.2739 0.0057 5 6 4.0485 2.5131 -0.0006 6 6 3.2505 3.6491 -0.0006 7 6 1.8771 3.5097 -0.0001 8 6 1.0046 4.7384 -0.0007 9 16 0.6544 5.2321 1.7094 10 8 -0.1277 4.2165 2.3228 11 8 1.8712 5.6360 2.3222 12 6 -0.3874 6.6978 1.4704 13 6 -0.7834 7.2568 2.8126 14 6 -1.9482 6.8191 3.4237 15 6 -2.3168 7.3185 4.6520 16 6 -1.5123 8.2859 5.2821 17 6 -1.8843 8.8112 6.5411 18 1 -1.5317 9.7855 6.8453 19 6 -2.7097 8.0685 7.3929 20 7 -2.8549 6.7819 7.2051 21 14 -3.6041 8.9140 8.7981 22 1 -4.5026 9.9632 8.2529 23 1 -4.4071 7.9140 9.5468 24 1 -2.6131 9.5370 9.7120 25 6 -0.3351 8.7271 4.6499 26 6 0.0172 8.2090 3.4247 27 7 1.3186 2.3141 0.0000 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0228 0.3695 0.0097 32 1 5.1254 2.5946 -0.0009 33 1 3.6993 4.6314 -0.0013 34 1 1.5198 5.5497 -0.5148 35 1 0.0686 4.5191 -0.5144 36 1 0.1685 7.4517 0.9129 37 1 -1.2824 6.4206 0.9135 38 1 -2.5668 6.0803 2.9358 39 1 -3.2222 6.9727 5.1283 40 1 -3.4267 6.2670 7.7958 41 1 0.2895 9.4695 5.1244 42 1 0.9205 8.5458 2.9377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342451380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:13 Heat of formation + Delta-G solvation = -79.268991 kcal Electronic energy + Delta-G solvation = -27085.810409 eV Core-core repulsion = 23122.320198 eV Total energy + Delta-G solvation = -3963.490211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73714 -39.57016 -39.08603 -37.90828 -36.91090 -35.94439 -34.23943 -33.22032 -32.92675 -31.26752 -29.86239 -29.34503 -27.77449 -25.97371 -24.08435 -23.61356 -23.00019 -22.03385 -19.85136 -19.30346 -19.27403 -18.13082 -17.82341 -17.36401 -17.02593 -17.01393 -16.90310 -16.84950 -15.94408 -15.63790 -15.56867 -15.38417 -15.24325 -14.51185 -14.35418 -14.14226 -13.89477 -13.72670 -13.68121 -13.51355 -13.17005 -13.02536 -12.99257 -12.94324 -12.75865 -12.71694 -12.70125 -12.50401 -12.22133 -11.93585 -11.76743 -11.49283 -11.34173 -11.02866 -10.89750 -10.79476 -9.56637 -9.45207 -9.24520 -8.71420 -6.40566 -1.16071 0.06141 0.22700 0.88978 1.08561 1.36833 1.48906 1.52520 1.93624 2.05994 2.17425 2.53961 2.65191 2.71065 3.03614 3.13100 3.57008 3.66448 3.87273 3.95040 4.00114 4.05621 4.17768 4.24577 4.36729 4.38616 4.42707 4.45510 4.54520 4.67920 4.72613 4.74347 4.92141 5.00146 5.08297 5.12624 5.26988 5.35326 5.38945 5.62005 5.84912 6.02513 6.05583 6.11639 6.28774 6.60963 6.68888 6.84494 6.93706 8.24924 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002458 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.122735 B =11387.338704 C =12099.138475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.317 6.317 3 C 0.294 3.706 4 C -0.187 4.187 5 C -0.035 4.035 6 C -0.199 4.199 7 C 0.136 3.864 8 C -0.551 4.551 9 S 2.376 3.624 10 O -0.985 6.985 11 O -0.973 6.973 12 C -0.502 4.502 13 C -0.230 4.230 14 C -0.091 4.091 15 C -0.197 4.197 16 C 0.084 3.916 17 C -0.489 4.489 18 H 0.084 0.916 19 C 0.031 3.969 20 N -0.820 5.820 21 Si 0.989 3.011 22 H -0.256 1.256 23 H -0.268 1.268 24 H -0.257 1.257 25 C -0.247 4.247 26 C -0.073 4.073 27 N -0.554 5.554 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.170 0.830 32 H 0.189 0.811 33 H 0.171 0.829 34 H 0.197 0.803 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.158 0.842 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.291 0.709 41 H 0.106 0.894 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.806 -6.997 -18.013 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.224 6.224 3 C 0.114 3.886 4 C -0.208 4.208 5 C -0.060 4.060 6 C -0.221 4.221 7 C 0.000 4.000 8 C -0.680 4.680 9 S 2.567 3.433 10 O -0.982 6.982 11 O -0.970 6.970 12 C -0.633 4.633 13 C -0.234 4.234 14 C -0.111 4.111 15 C -0.217 4.217 16 C 0.081 3.919 17 C -0.518 4.518 18 H 0.102 0.898 19 C -0.185 4.185 20 N -0.445 5.445 21 Si 0.809 3.191 22 H -0.180 1.180 23 H -0.192 1.192 24 H -0.181 1.181 25 C -0.267 4.267 26 C -0.092 4.092 27 N -0.279 5.279 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.188 0.812 32 H 0.206 0.794 33 H 0.189 0.811 34 H 0.214 0.786 35 H 0.188 0.812 36 H 0.190 0.810 37 H 0.176 0.824 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.208 -8.033 -17.178 20.664 hybrid contribution -0.388 0.463 0.336 0.691 sum 7.820 -7.571 -16.843 20.053 Atomic orbital electron populations 1.23050 0.76189 1.04750 1.02023 1.86204 1.24033 1.24206 1.87936 1.20261 0.90645 0.84469 0.93192 1.21574 0.91165 1.01546 1.06491 1.21977 1.02793 0.89856 0.91355 1.22370 0.93018 1.02784 1.03892 1.20057 0.92479 0.90174 0.97281 1.29354 1.10614 1.03679 1.24315 1.09659 0.76387 0.78207 0.79040 1.93497 1.71583 1.58408 1.74710 1.93482 1.45862 1.83273 1.74390 1.28753 1.15380 1.16782 1.02391 1.18567 1.00378 1.06959 0.97502 1.20948 0.96511 0.98255 0.95360 1.21330 1.01584 1.03260 0.95540 1.18105 0.90229 0.90660 0.92910 1.19973 1.27219 1.04035 1.00571 0.89759 1.26939 0.95137 0.94729 1.01714 1.69899 1.29975 1.07937 1.36664 0.85151 0.78561 0.78835 0.76572 1.18035 1.19241 1.18100 1.21245 0.98815 1.07760 0.98872 1.20914 0.98142 0.95367 0.94806 1.66937 1.42292 0.99045 1.19608 0.93826 0.92032 0.85490 0.81234 0.79373 0.81138 0.78594 0.81192 0.81018 0.82360 0.87044 0.87761 0.89793 0.87566 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.38 113.37 1.18 1.91 16 2 O -0.32 -7.94 10.48 -89.91 -0.94 -8.88 16 3 C 0.29 7.78 7.49 84.79 0.63 8.41 16 4 C -0.19 -3.68 10.04 22.47 0.23 -3.46 16 5 C -0.03 -0.57 10.17 22.45 0.23 -0.35 16 6 C -0.20 -3.99 9.73 22.37 0.22 -3.78 16 7 C 0.14 3.43 6.04 42.49 0.26 3.69 16 8 C -0.55 -10.75 6.09 71.24 0.43 -10.31 16 9 S 2.38 75.85 4.68 -56.49 -0.26 75.59 16 10 O -0.98 -42.30 18.10 -127.37 -2.30 -44.61 16 11 O -0.97 -37.07 18.10 -127.37 -2.31 -39.37 16 12 C -0.50 -13.81 5.92 71.23 0.42 -13.39 16 13 C -0.23 -9.63 5.16 -19.68 -0.10 -9.73 16 14 C -0.09 -4.36 9.67 22.22 0.21 -4.15 16 15 C -0.20 -10.77 8.70 22.73 0.20 -10.57 16 16 C 0.08 4.65 5.58 -21.29 -0.12 4.53 16 17 C -0.49 -26.59 9.05 23.46 0.21 -26.38 16 18 H 0.08 4.33 7.91 -2.91 -0.02 4.30 16 19 C 0.03 1.57 5.14 85.26 0.44 2.01 16 20 N -0.82 -44.19 10.95 21.83 0.24 -43.96 16 21 Si 0.99 38.18 29.60 68.60 2.03 40.21 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 23 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 24 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 25 C -0.25 -12.34 9.80 22.73 0.22 -12.12 16 26 C -0.07 -3.19 9.67 22.22 0.21 -2.98 16 27 N -0.55 -16.04 9.13 -296.99 -2.71 -18.75 16 28 H 0.04 1.11 8.10 -2.39 -0.02 1.09 16 29 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 30 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.20 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.17 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.17 3.05 8.08 -2.39 -0.02 3.03 16 37 H 0.16 3.28 8.08 -2.39 -0.02 3.26 16 38 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.10 5.92 6.15 -2.91 -0.02 5.90 16 40 H 0.29 14.18 8.30 -92.70 -0.77 13.42 16 41 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 42 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -84.17 378.41 -0.35 -84.52 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 1.03 Total: 31.91 kcal Atomic # 6 Polarization: -81.52 SS G_CDS: 4.88 Total: -76.65 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -2.47 Total: -62.71 kcal Atomic # 8 Polarization: -87.31 SS G_CDS: -5.55 Total: -92.86 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 16 Polarization: 75.85 SS G_CDS: -0.26 Total: 75.59 kcal Total: -84.17 -0.35 -84.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342451380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.246 kcal (2) G-P(sol) polarization free energy of solvation -84.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds