Wall clock time and date at job start Wed Apr 1 2020 04:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34236 * 116.99981 * 2 1 4 4 O 1.20824 * 119.99577 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00065 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47089 * 180.02562 * 5 3 2 7 7 C 1.33258 * 120.00214 * 277.44500 * 6 5 3 8 8 H 1.08000 * 119.99654 * 321.40442 * 7 6 5 9 9 C 1.46782 * 120.00212 * 141.40538 * 7 6 5 10 10 N 1.29315 * 120.00228 * 339.19936 * 9 7 6 11 11 Si 1.86800 * 120.00023 * 159.20118 * 9 7 6 12 12 H 1.48498 * 109.47310 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47146 * 119.99836 * 11 9 7 14 14 H 1.48496 * 109.47324 * 239.99712 * 11 9 7 15 15 C 1.34778 * 119.99898 * 97.43878 * 6 5 3 16 16 O 1.21610 * 119.99950 * 185.59410 * 15 6 5 17 17 C 1.46684 * 119.99829 * 5.59587 * 15 6 5 18 18 C 1.36607 * 126.79089 * 297.58320 * 17 15 6 19 19 N 1.35338 * 109.75105 * 180.02562 * 18 17 15 20 20 H 0.97001 * 124.76937 * 180.02562 * 19 18 17 21 21 C 1.38006 * 110.46577 * 359.97438 * 19 18 17 22 22 C 1.39109 * 133.16671 * 180.02562 * 21 19 18 23 23 C 1.37787 * 119.93263 * 179.74063 * 22 21 19 24 24 N 1.48017 * 119.68732 * 180.25955 * 23 22 21 25 25 O 1.31699 * 120.00414 * 180.26798 * 24 23 22 26 26 O 1.31698 * 119.99833 * 0.26353 * 24 23 22 27 27 C 1.38739 * 120.63038 * 0.52960 * 23 22 21 28 28 C 1.37779 * 120.29310 * 359.45423 * 27 23 22 29 29 C 1.39249 * 119.67150 * 0.27508 * 28 27 23 30 30 H 1.09000 * 109.47039 * 299.99402 * 1 2 3 31 31 H 1.09004 * 109.47042 * 59.99708 * 1 2 3 32 32 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47182 * 60.00398 * 5 3 2 34 34 H 1.08999 * 109.47288 * 300.00422 * 5 3 2 35 35 H 0.96994 * 120.00543 * 185.04174 * 10 9 7 36 36 H 1.08004 * 125.12367 * 0.02877 * 18 17 15 37 37 H 1.07994 * 120.03594 * 0.02562 * 22 21 19 38 38 H 1.08005 * 119.85332 * 179.73833 * 27 23 22 39 39 H 1.08001 * 120.16201 * 180.26013 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.0268 3.3620 -1.1437 8 1 4.3747 2.8809 -2.0459 9 6 3.6035 4.7670 -1.1775 10 7 2.8299 5.2318 -0.2513 11 14 4.1822 5.8838 -2.5586 12 1 5.0516 5.1154 -3.4852 13 1 3.0056 6.4034 -3.3010 14 1 4.9487 7.0204 -1.9878 15 6 4.3182 3.2825 1.1578 16 8 4.5644 4.4732 1.1743 17 6 4.3874 2.5020 2.3978 18 6 3.3588 1.8404 3.0066 19 7 3.8066 1.2344 4.1308 20 1 3.2576 0.7045 4.7298 21 6 5.1543 1.4752 4.3048 22 6 6.0723 1.0899 5.2763 23 6 7.3868 1.4909 5.1778 24 7 8.3602 1.0730 6.2116 25 8 9.6171 1.4571 6.1263 26 8 7.9694 0.3170 7.2167 27 6 7.8056 2.2874 4.1218 28 6 6.9114 2.6790 3.1495 29 6 5.5811 2.2763 3.2339 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.9558 0.7811 -0.8909 34 1 3.9565 0.7806 0.8891 35 1 2.4910 6.1385 -0.3122 36 1 2.3416 1.8062 2.6452 37 1 5.7560 0.4732 6.1046 38 1 8.8381 2.5979 4.0591 39 1 7.2406 3.2955 2.3261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348797629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:48 Heat of formation + Delta-G solvation = 7.334636 kcal Electronic energy + Delta-G solvation = -30404.423616 eV Core-core repulsion = 25898.395606 eV Total energy + Delta-G solvation = -4506.028010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.104 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.74198 -39.92431 -39.22209 -38.12520 -36.86793 -35.86649 -34.40700 -34.13093 -32.59943 -31.95204 -30.20691 -29.68290 -28.62914 -26.49225 -26.17324 -24.69614 -23.32515 -21.99011 -21.74748 -20.71969 -19.38131 -18.74189 -18.20055 -17.40067 -17.13593 -16.79983 -16.44566 -16.17630 -15.98699 -15.91404 -15.25655 -14.88945 -14.78065 -14.52035 -14.19857 -14.01280 -13.84570 -13.43670 -13.03676 -12.77658 -12.46641 -12.14446 -11.99249 -11.81508 -11.63484 -11.52294 -11.37832 -11.31388 -11.10144 -11.00433 -10.68654 -10.64778 -10.39325 -10.23885 -10.05930 -9.82859 -9.03405 -8.79378 -8.45445 -7.86383 -7.42741 -6.25056 -3.78900 -0.69652 0.82772 1.11679 1.22396 2.31288 2.75668 2.86332 3.04999 3.22666 3.32250 3.33671 3.39568 4.08786 4.19072 4.29983 4.49238 4.61496 4.71579 4.84019 4.90733 5.11075 5.15812 5.19002 5.26776 5.32669 5.39985 5.59243 5.59640 5.61878 5.68844 5.84929 5.88102 5.96175 6.08913 6.30368 6.45049 6.68736 6.79739 6.83996 7.15890 7.40137 7.98792 8.40497 8.75096 9.09909 9.42958 10.19205 10.75985 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.003665 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.600000 B = 7637.372051 C = 9474.963146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.378 6.378 3 C 0.420 3.580 4 O -0.458 6.458 5 C 0.105 3.895 6 N -0.397 5.397 7 C -0.400 4.400 8 H 0.087 0.913 9 C 0.085 3.915 10 N -0.759 5.759 11 Si 0.910 3.090 12 H -0.266 1.266 13 H -0.285 1.285 14 H -0.279 1.279 15 C 0.513 3.487 16 O -0.508 6.508 17 C -0.170 4.170 18 C 0.094 3.906 19 N -0.575 5.575 20 H 0.422 0.578 21 C 0.081 3.919 22 C -0.046 4.046 23 C 0.006 3.994 24 N -0.007 5.007 25 O -0.177 6.177 26 O -0.191 6.191 27 C -0.095 4.095 28 C -0.049 4.049 29 C -0.024 4.024 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.269 0.731 36 H 0.178 0.822 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 -11.149 5.552 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.258 3.742 4 O -0.340 6.340 5 C -0.021 4.021 6 N -0.116 5.116 7 C -0.528 4.528 8 H 0.105 0.895 9 C -0.138 4.138 10 N -0.386 5.386 11 Si 0.736 3.264 12 H -0.190 1.190 13 H -0.211 1.211 14 H -0.205 1.205 15 C 0.302 3.698 16 O -0.385 6.385 17 C -0.181 4.181 18 C -0.036 4.036 19 N -0.177 5.177 20 H 0.259 0.741 21 C -0.027 4.027 22 C -0.068 4.068 23 C -0.082 4.082 24 N 0.469 4.531 25 O -0.370 6.370 26 O -0.381 6.381 27 C -0.116 4.116 28 C -0.069 4.069 29 C -0.031 4.031 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.195 0.805 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.007 -9.897 5.330 11.419 hybrid contribution -0.495 0.134 0.039 0.514 sum -2.502 -9.763 5.369 11.419 Atomic orbital electron populations 1.23080 0.78157 1.02483 1.02132 1.86575 1.22198 1.35420 1.85374 1.25448 0.93515 0.81276 0.73936 1.90791 1.66107 1.35567 1.41565 1.21513 0.86028 0.90291 1.04255 1.41841 1.55188 1.07393 1.07137 1.19708 1.50597 0.93797 0.88683 0.89532 1.26731 0.93215 0.98274 0.95538 1.68947 1.22504 1.16142 1.31021 0.86200 0.78825 0.80385 0.80972 1.18978 1.21131 1.20452 1.16667 0.84775 0.86960 0.81437 1.90671 1.50220 1.13606 1.84028 1.20984 0.91238 1.05377 1.00463 1.22324 0.99573 0.95052 0.86693 1.41418 1.06877 1.45936 1.23466 0.74055 1.17647 0.85060 1.02456 0.97543 1.19598 0.89395 0.99419 0.98348 1.19690 0.87861 1.08333 0.92314 1.50392 1.03234 0.97998 1.01501 1.96265 0.96816 1.59712 1.84188 1.96246 1.84509 1.34297 1.23065 1.20725 1.02003 0.96898 0.91952 1.20602 0.90212 0.97799 0.98241 1.19291 0.93832 0.96379 0.93604 0.92672 0.92324 0.89070 0.87998 0.88632 0.91923 0.80469 0.83124 0.82845 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.38 -5.56 10.57 -39.27 -0.41 -5.98 16 3 C 0.42 7.59 7.13 36.00 0.26 7.85 16 4 O -0.46 -10.29 15.98 -18.75 -0.30 -10.59 16 5 C 0.11 1.85 5.59 -5.19 -0.03 1.82 16 6 N -0.40 -9.03 2.06 -116.03 -0.24 -9.27 16 7 C -0.40 -10.21 9.21 -13.48 -0.12 -10.33 16 8 H 0.09 2.12 8.01 -52.49 -0.42 1.70 16 9 C 0.08 2.25 4.46 -15.16 -0.07 2.19 16 10 N -0.76 -21.34 11.26 56.00 0.63 -20.71 16 11 Si 0.91 20.58 29.69 -169.99 -5.05 15.53 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.51 11.96 6.99 -12.85 -0.09 11.87 16 16 O -0.51 -14.12 14.02 5.27 0.07 -14.05 16 17 C -0.17 -3.06 4.72 -103.31 -0.49 -3.55 16 18 C 0.09 1.33 10.19 -16.59 -0.17 1.16 16 19 N -0.57 -6.16 5.98 -10.45 -0.06 -6.22 16 20 H 0.42 2.81 8.96 -40.82 -0.37 2.44 16 21 C 0.08 1.02 7.25 -83.96 -0.61 0.41 16 22 C -0.05 -0.54 9.59 -39.42 -0.38 -0.92 16 23 C 0.01 0.08 6.88 -79.93 -0.55 -0.47 16 24 N -0.01 -0.11 4.98 33.97 0.17 0.06 16 25 O -0.18 -2.81 19.12 -31.57 -0.60 -3.42 16 26 O -0.19 -2.96 19.12 -31.57 -0.60 -3.57 16 27 C -0.10 -1.23 9.56 -39.56 -0.38 -1.61 16 28 C -0.05 -0.71 10.09 -39.37 -0.40 -1.11 16 29 C -0.02 -0.38 6.36 -104.95 -0.67 -1.05 16 30 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 1.60 8.09 -51.93 -0.42 1.18 16 34 H 0.10 1.42 5.85 -51.93 -0.30 1.11 16 35 H 0.27 7.20 8.27 -40.82 -0.34 6.86 16 36 H 0.18 2.45 7.34 -52.48 -0.39 2.06 16 37 H 0.15 1.45 7.54 -52.49 -0.40 1.06 16 38 H 0.15 1.75 7.55 -52.48 -0.40 1.35 16 39 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -34.88 356.77 -7.15 -42.03 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.51 Total: 3.05 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -2.62 Total: 7.74 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.50 Total: -36.14 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.85 Total: -37.59 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.05 Total: 15.53 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.88 -7.15 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348797629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.366 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds