Wall clock time and date at job start Wed Apr 1 2020 04:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34236 * 116.99981 * 2 1 4 4 O 1.20824 * 119.99577 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00065 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47089 * 180.02562 * 5 3 2 7 7 C 1.33258 * 120.00214 * 277.44500 * 6 5 3 8 8 H 1.08000 * 119.99654 * 321.40442 * 7 6 5 9 9 C 1.46782 * 120.00212 * 141.40538 * 7 6 5 10 10 N 1.29315 * 120.00228 * 339.19936 * 9 7 6 11 11 Si 1.86800 * 120.00023 * 159.20118 * 9 7 6 12 12 H 1.48498 * 109.47310 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47146 * 119.99836 * 11 9 7 14 14 H 1.48496 * 109.47324 * 239.99712 * 11 9 7 15 15 C 1.34778 * 119.99898 * 97.43878 * 6 5 3 16 16 O 1.21610 * 119.99950 * 185.59410 * 15 6 5 17 17 C 1.46684 * 119.99829 * 5.59587 * 15 6 5 18 18 C 1.36607 * 126.79089 * 297.58320 * 17 15 6 19 19 N 1.35338 * 109.75105 * 180.02562 * 18 17 15 20 20 H 0.97001 * 124.76937 * 180.02562 * 19 18 17 21 21 C 1.38006 * 110.46577 * 359.97438 * 19 18 17 22 22 C 1.39109 * 133.16671 * 180.02562 * 21 19 18 23 23 C 1.37787 * 119.93263 * 179.74063 * 22 21 19 24 24 N 1.48017 * 119.68732 * 180.25955 * 23 22 21 25 25 O 1.31699 * 120.00414 * 180.26798 * 24 23 22 26 26 O 1.31698 * 119.99833 * 0.26353 * 24 23 22 27 27 C 1.38739 * 120.63038 * 0.52960 * 23 22 21 28 28 C 1.37779 * 120.29310 * 359.45423 * 27 23 22 29 29 C 1.39249 * 119.67150 * 0.27508 * 28 27 23 30 30 H 1.09000 * 109.47039 * 299.99402 * 1 2 3 31 31 H 1.09004 * 109.47042 * 59.99708 * 1 2 3 32 32 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47182 * 60.00398 * 5 3 2 34 34 H 1.08999 * 109.47288 * 300.00422 * 5 3 2 35 35 H 0.96994 * 120.00543 * 185.04174 * 10 9 7 36 36 H 1.08004 * 125.12367 * 0.02877 * 18 17 15 37 37 H 1.07994 * 120.03594 * 0.02562 * 22 21 19 38 38 H 1.08005 * 119.85332 * 179.73833 * 27 23 22 39 39 H 1.08001 * 120.16201 * 180.26013 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.0268 3.3620 -1.1437 8 1 4.3747 2.8809 -2.0459 9 6 3.6035 4.7670 -1.1775 10 7 2.8299 5.2318 -0.2513 11 14 4.1822 5.8838 -2.5586 12 1 5.0516 5.1154 -3.4852 13 1 3.0056 6.4034 -3.3010 14 1 4.9487 7.0204 -1.9878 15 6 4.3182 3.2825 1.1578 16 8 4.5644 4.4732 1.1743 17 6 4.3874 2.5020 2.3978 18 6 3.3588 1.8404 3.0066 19 7 3.8066 1.2344 4.1308 20 1 3.2576 0.7045 4.7298 21 6 5.1543 1.4752 4.3048 22 6 6.0723 1.0899 5.2763 23 6 7.3868 1.4909 5.1778 24 7 8.3602 1.0730 6.2116 25 8 9.6171 1.4571 6.1263 26 8 7.9694 0.3170 7.2167 27 6 7.8056 2.2874 4.1218 28 6 6.9114 2.6790 3.1495 29 6 5.5811 2.2763 3.2339 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.9558 0.7811 -0.8909 34 1 3.9565 0.7806 0.8891 35 1 2.4910 6.1385 -0.3122 36 1 2.3416 1.8062 2.6452 37 1 5.7560 0.4732 6.1046 38 1 8.8381 2.5979 4.0591 39 1 7.2406 3.2955 2.3261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348797629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:47 Heat of formation + Delta-G solvation = -14.937236 kcal Electronic energy + Delta-G solvation = -30405.389396 eV Core-core repulsion = 25898.395606 eV Total energy + Delta-G solvation = -4506.993791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.104 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.87699 -41.33789 -40.38873 -39.72901 -37.98443 -37.28953 -35.88678 -35.57774 -34.23759 -33.34531 -31.32754 -30.88656 -29.99949 -27.75163 -27.35864 -26.32763 -24.39846 -23.52870 -22.85540 -22.09098 -20.84290 -19.99736 -19.35804 -18.59487 -18.55836 -18.35189 -17.64517 -17.46613 -17.27762 -17.11997 -16.68703 -16.51753 -15.91804 -15.87654 -15.58353 -15.28228 -15.01641 -14.85562 -14.35147 -14.20693 -14.05161 -13.43474 -13.23774 -13.20708 -12.92130 -12.85600 -12.78067 -12.74647 -12.49791 -12.46064 -12.26089 -12.03182 -11.88797 -11.62985 -11.37113 -11.21096 -10.91404 -10.22603 -9.86533 -9.29889 -9.06411 -8.18129 -5.72834 -1.85582 -0.27987 -0.00790 0.13535 1.08666 1.40017 1.42144 1.45845 1.54292 1.71682 1.80523 2.26770 2.37805 2.57095 3.08179 3.25868 3.27317 3.52214 3.56544 3.64415 3.80121 4.00311 4.11644 4.13235 4.25007 4.39422 4.41630 4.43049 4.51686 4.55245 4.62086 4.73579 4.77313 4.96345 5.15691 5.23866 5.43620 5.51982 5.54208 5.61396 6.11577 6.29904 6.86515 7.01869 7.32755 7.64818 8.42337 8.83898 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.003665 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.600000 B = 7637.372051 C = 9474.963146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.432 3.568 4 O -0.507 6.507 5 C 0.105 3.895 6 N -0.412 5.412 7 C -0.419 4.419 8 H 0.089 0.911 9 C 0.037 3.963 10 N -0.799 5.799 11 Si 0.964 3.036 12 H -0.251 1.251 13 H -0.279 1.279 14 H -0.292 1.292 15 C 0.512 3.488 16 O -0.569 6.569 17 C -0.219 4.219 18 C 0.131 3.869 19 N -0.543 5.543 20 H 0.447 0.553 21 C 0.088 3.912 22 C -0.017 4.017 23 C -0.006 4.006 24 N -0.004 5.004 25 O -0.209 6.209 26 O -0.184 6.184 27 C -0.081 4.081 28 C -0.067 4.067 29 C -0.038 4.038 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.262 0.738 36 H 0.186 0.814 37 H 0.184 0.816 38 H 0.165 0.835 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -14.323 6.976 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.273 3.727 4 O -0.393 6.393 5 C -0.020 4.020 6 N -0.130 5.130 7 C -0.547 4.547 8 H 0.107 0.893 9 C -0.181 4.181 10 N -0.428 5.428 11 Si 0.789 3.211 12 H -0.174 1.174 13 H -0.205 1.205 14 H -0.219 1.219 15 C 0.302 3.698 16 O -0.450 6.450 17 C -0.230 4.230 18 C -0.003 4.003 19 N -0.146 5.146 20 H 0.290 0.710 21 C -0.020 4.020 22 C -0.038 4.038 23 C -0.094 4.094 24 N 0.469 4.531 25 O -0.395 6.395 26 O -0.378 6.378 27 C -0.101 4.101 28 C -0.086 4.086 29 C -0.044 4.044 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.153 0.847 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.073 0.927 36 H 0.203 0.797 37 H 0.201 0.799 38 H 0.182 0.818 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.672 -13.146 6.750 15.018 hybrid contribution -0.361 0.895 -0.305 1.012 sum -3.033 -12.252 6.445 14.172 Atomic orbital electron populations 1.23430 0.75930 1.05235 1.01804 1.86531 1.24127 1.33026 1.84524 1.25204 0.93502 0.81372 0.72616 1.90798 1.67100 1.37377 1.44045 1.21553 0.86226 0.87478 1.06740 1.41919 1.55661 1.08957 1.06473 1.19933 1.50623 0.94409 0.89724 0.89308 1.27503 0.93308 0.99811 0.97467 1.69065 1.24660 1.15910 1.33173 0.85364 0.78497 0.78391 0.78867 1.17448 1.20489 1.21866 1.17340 0.82749 0.86678 0.83023 1.90616 1.52423 1.16455 1.85470 1.20458 0.93937 1.08375 1.00204 1.22199 0.98726 0.92819 0.86559 1.41254 1.06344 1.44647 1.22403 0.70979 1.17513 0.85711 1.02009 0.96761 1.19823 0.88159 0.97719 0.98103 1.19815 0.88324 1.09054 0.92202 1.50526 1.03331 0.97685 1.01539 1.96280 0.97359 1.61021 1.84799 1.96229 1.84377 1.33950 1.23232 1.20762 1.02243 0.95916 0.91191 1.20506 0.90493 0.98804 0.98784 1.19371 0.93644 0.97242 0.94167 0.92353 0.93486 0.84679 0.86040 0.85498 0.92724 0.79735 0.79883 0.81790 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.37 -9.75 10.57 -51.47 -0.54 -10.29 16 3 C 0.43 15.10 7.13 71.24 0.51 15.61 16 4 O -0.51 -22.90 15.98 21.97 0.35 -22.55 16 5 C 0.11 3.57 5.59 85.63 0.48 4.05 16 6 N -0.41 -19.09 2.06 -639.26 -1.32 -20.41 16 7 C -0.42 -21.98 9.21 86.71 0.80 -21.19 16 8 H 0.09 4.44 8.01 -2.91 -0.02 4.41 16 9 C 0.04 2.03 4.46 87.30 0.39 2.42 16 10 N -0.80 -47.26 11.26 23.26 0.26 -46.99 16 11 Si 0.96 43.94 29.69 68.60 2.04 45.98 16 12 H -0.25 -10.65 7.11 99.48 0.71 -9.95 16 13 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 14 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 15 C 0.51 24.59 6.99 86.45 0.60 25.20 16 16 O -0.57 -33.34 14.02 -4.06 -0.06 -33.40 16 17 C -0.22 -7.77 4.72 -19.02 -0.09 -7.86 16 18 C 0.13 3.37 10.19 83.77 0.85 4.23 16 19 N -0.54 -9.32 5.98 -186.99 -1.12 -10.44 16 20 H 0.45 3.47 8.96 -92.71 -0.83 2.64 16 21 C 0.09 1.92 7.25 38.90 0.28 2.20 16 22 C -0.02 -0.33 9.59 22.37 0.21 -0.11 16 23 C -0.01 -0.14 6.88 36.39 0.25 0.11 16 24 N 0.00 -0.11 4.98 -46.43 -0.23 -0.34 16 25 O -0.21 -6.43 19.12 3.52 0.07 -6.37 16 26 O -0.18 -5.14 19.12 3.52 0.07 -5.07 16 27 C -0.08 -2.00 9.56 22.28 0.21 -1.79 16 28 C -0.07 -1.91 10.09 22.40 0.23 -1.68 16 29 C -0.04 -1.13 6.36 -20.08 -0.13 -1.26 16 30 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 32 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.12 3.63 8.09 -2.39 -0.02 3.61 16 34 H 0.13 3.46 5.85 -2.39 -0.01 3.45 16 35 H 0.26 14.90 8.27 -92.71 -0.77 14.13 16 36 H 0.19 4.63 7.34 -2.91 -0.02 4.61 16 37 H 0.18 2.46 7.54 -2.91 -0.02 2.44 16 38 H 0.16 3.64 7.55 -2.91 -0.02 3.62 16 39 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -81.22 356.77 5.63 -75.58 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.32 Total: 12.56 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 5.80 Total: 21.74 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -2.41 Total: -78.19 kcal Atomic # 8 Polarization: -77.56 SS G_CDS: -0.12 Total: -77.68 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.04 Total: 45.98 kcal Total: -81.22 5.63 -75.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348797629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.647 kcal (2) G-P(sol) polarization free energy of solvation -81.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds