Wall clock time and date at job start Wed Apr 1 2020 04:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40423 * 107.86638 * 179.90771 * 3 2 1 5 5 N 1.40097 * 125.97578 * 180.14410 * 4 3 2 6 6 C 1.34778 * 119.99800 * 0.27934 * 5 4 3 7 7 O 1.21604 * 119.99807 * 359.97438 * 6 5 4 8 8 C 1.47500 * 119.99659 * 179.97438 * 6 5 4 9 9 C 1.39993 * 120.60142 * 359.71966 * 8 6 5 10 10 C 1.38333 * 118.35003 * 179.75954 * 9 8 6 11 11 N 1.48025 * 120.27280 * 180.23971 * 10 9 8 12 12 O 1.21795 * 120.00306 * 180.30251 * 11 10 9 13 13 O 1.21799 * 119.99756 * 0.30135 * 11 10 9 14 14 C 1.38356 * 119.45572 * 0.53885 * 10 9 8 15 15 N 1.31874 * 121.19198 * 359.70034 * 14 10 9 16 16 C 1.32238 * 121.80081 * 0.02562 * 15 14 10 17 17 O 1.35425 * 119.80325 * 179.97438 * 16 15 14 18 18 N 1.31225 * 108.04889 * 0.36224 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46499 * 125.97361 * 359.92724 * 19 2 1 21 21 C 1.50701 * 109.47335 * 90.00276 * 20 19 2 22 22 H 1.08005 * 119.99355 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00498 * 179.97438 * 21 20 19 24 24 N 1.31521 * 119.99599 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00380 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47013 * 90.00014 * 25 23 21 27 27 H 1.48503 * 109.47018 * 210.00215 * 25 23 21 28 28 H 1.48504 * 109.46715 * 329.99987 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.08001 * 126.06730 * 0.02562 * 3 2 1 33 33 H 0.96996 * 119.99913 * 180.27835 * 5 4 3 34 34 H 1.08007 * 120.82454 * 0.02562 * 9 8 6 35 35 H 1.08002 * 119.40392 * 179.72210 * 14 10 9 36 36 H 0.96707 * 113.99594 * 270.02396 * 17 16 15 37 37 H 1.09005 * 109.46748 * 209.99555 * 20 19 2 38 38 H 1.09000 * 109.46930 * 329.99860 * 20 19 2 39 39 H 0.96995 * 120.00072 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0022 5 7 4.7731 1.4745 0.0057 6 6 4.6363 2.8153 0.0130 7 8 3.5269 3.3132 0.0161 8 6 5.8323 3.6785 0.0174 9 6 7.1154 3.1186 0.0198 10 6 8.2044 3.9716 0.0187 11 7 9.5801 3.4254 0.0158 12 8 10.5354 4.1809 0.0205 13 8 9.7569 2.2203 0.0089 14 6 7.9971 5.3395 0.0266 15 7 6.7794 5.8458 0.0293 16 6 5.7045 5.0756 0.0250 17 8 4.4729 5.6388 0.0285 18 7 3.6337 -0.6577 -0.0045 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0120 21 6 1.6936 -2.9559 -1.4348 22 1 1.9088 -2.2842 -2.2528 23 6 1.2759 -4.2443 -1.6924 24 7 1.0143 -5.0623 -0.6963 25 14 1.0815 -4.8283 -3.4561 26 1 2.3620 -5.4140 -3.9276 27 1 0.0125 -5.8570 -3.5220 28 1 0.7152 -3.6778 -4.3208 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1210 0.0004 33 1 5.6580 1.0772 0.0029 34 1 7.2516 2.0471 0.0181 35 1 8.8479 6.0047 0.0303 36 1 4.1156 5.7975 0.9130 37 1 2.5851 -3.1070 0.4982 38 1 0.8918 -2.5582 0.5025 39 1 0.7208 -5.9689 -0.8774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350629772.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:06 Heat of formation + Delta-G solvation = 52.565242 kcal Electronic energy + Delta-G solvation = -29011.953165 eV Core-core repulsion = 24540.179252 eV Total energy + Delta-G solvation = -4471.773913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.80551 -41.66241 -40.78355 -39.30675 -37.96899 -37.06490 -35.21211 -34.07924 -33.38822 -32.25913 -31.47154 -30.88007 -27.16134 -26.92236 -26.50946 -25.71780 -24.09633 -23.06046 -22.01215 -20.31617 -20.17605 -19.76047 -19.26047 -19.12112 -18.07185 -17.70331 -17.14276 -16.90020 -16.76703 -16.26080 -15.66888 -15.44405 -15.08736 -14.52711 -14.45631 -14.29605 -14.09505 -13.88995 -13.16564 -12.66962 -12.56556 -12.47672 -12.33001 -12.07427 -11.95608 -11.78097 -11.59239 -11.52418 -11.28318 -11.19679 -10.91904 -10.81445 -10.63899 -10.33496 -10.26321 -10.18637 -9.88103 -9.65946 -8.71195 -8.13344 -7.65760 -6.32840 -4.40956 -0.97696 -0.38569 0.58748 0.70856 1.93327 2.23903 2.45442 2.62098 2.83627 3.17399 3.24011 3.27276 3.33606 3.38513 3.50663 3.52759 3.73220 3.97281 4.23853 4.29878 4.46543 4.66685 5.00182 5.01444 5.26835 5.52222 5.75703 5.77213 5.98033 6.01305 6.29279 6.32916 6.45753 6.52963 6.78681 6.80663 6.94559 7.09752 7.16442 7.37055 7.59083 7.79173 7.80284 7.90405 8.46020 8.65962 9.26028 10.74622 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.002405 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.690572 B =11641.721457 C =13017.139031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.095 3.905 3 C -0.288 4.288 4 C 0.258 3.742 5 N -0.621 5.621 6 C 0.570 3.430 7 O -0.483 6.483 8 C -0.194 4.194 9 C 0.036 3.964 10 C -0.120 4.120 11 N 0.034 4.966 12 O -0.147 6.147 13 O -0.146 6.146 14 C 0.226 3.774 15 N -0.490 5.490 16 C 0.426 3.574 17 O -0.446 6.446 18 N -0.313 5.313 19 N -0.312 5.312 20 C 0.257 3.743 21 C -0.539 4.539 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.891 5.891 25 Si 0.907 3.093 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.409 0.591 34 H 0.175 0.825 35 H 0.197 0.803 36 H 0.421 0.579 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 20.286 4.797 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.319 4.319 4 C 0.006 3.994 5 N -0.269 5.269 6 C 0.353 3.647 7 O -0.356 6.356 8 C -0.202 4.202 9 C 0.009 3.991 10 C -0.206 4.206 11 N 0.556 4.444 12 O -0.364 6.364 13 O -0.363 6.363 14 C 0.065 3.935 15 N -0.210 5.210 16 C 0.247 3.753 17 O -0.256 6.256 18 N -0.144 5.144 19 N -0.094 5.094 20 C 0.140 3.860 21 C -0.577 4.577 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.178 0.822 33 H 0.245 0.755 34 H 0.192 0.808 35 H 0.213 0.787 36 H 0.285 0.715 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.681 20.419 4.275 22.596 hybrid contribution 0.417 -1.036 -0.541 1.241 sum 9.098 19.384 3.734 21.736 Atomic orbital electron populations 1.20400 0.87699 1.04053 1.02662 1.21096 0.95061 0.87012 1.00541 1.21223 0.89472 0.99913 1.21263 1.18835 0.86682 0.89638 1.04253 1.42190 1.08105 1.04590 1.71986 1.17272 0.87886 0.81162 0.78331 1.90818 1.24594 1.73487 1.46666 1.21120 0.93633 0.94819 1.10658 1.21720 0.89175 1.02494 0.85674 1.22141 0.83619 0.95839 1.19045 1.43250 1.02167 1.01106 0.97907 1.94573 1.32029 1.56767 1.53037 1.94622 1.91578 0.97156 1.52945 1.22875 0.95313 0.90574 0.84726 1.67868 0.97745 1.38917 1.16429 1.19543 0.86176 0.85717 0.83879 1.84699 1.24466 1.81960 1.34491 1.77282 1.00205 1.08212 1.28682 1.49075 1.00798 1.07993 1.51567 1.19750 0.96085 0.71081 0.99096 1.21301 1.47142 0.98053 0.91240 0.91717 1.24927 0.94556 0.96011 0.98210 1.69915 1.44726 1.06999 1.31184 0.86348 0.78095 0.78605 0.83615 1.20273 1.20817 1.19635 0.90947 0.89764 0.90496 0.82200 0.75462 0.80808 0.78671 0.71472 0.92861 0.92622 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 9.89 36.01 0.36 -1.07 16 2 C 0.09 1.86 6.92 -82.28 -0.57 1.29 16 3 C -0.29 -5.40 9.52 -39.83 -0.38 -5.78 16 4 C 0.26 4.79 8.11 -154.44 -1.25 3.54 16 5 N -0.62 -8.43 5.40 -12.09 -0.07 -8.50 16 6 C 0.57 6.99 7.74 -12.49 -0.10 6.89 16 7 O -0.48 -7.07 12.32 -16.50 -0.20 -7.27 16 8 C -0.19 -1.72 5.90 -104.69 -0.62 -2.34 16 9 C 0.04 0.27 9.13 -38.89 -0.36 -0.09 16 10 C -0.12 -0.91 6.87 -79.86 -0.55 -1.46 16 11 N 0.03 0.32 4.45 34.00 0.15 0.47 16 12 O -0.15 -1.42 18.46 -29.46 -0.54 -1.97 16 13 O -0.15 -1.57 18.51 -29.46 -0.55 -2.12 16 14 C 0.23 1.43 10.70 -17.49 -0.19 1.24 16 15 N -0.49 -3.81 10.37 -12.98 -0.13 -3.94 16 16 C 0.43 3.63 7.77 -16.60 -0.13 3.50 16 17 O -0.45 -3.75 11.66 -39.74 -0.46 -4.21 16 18 N -0.31 -6.78 12.59 31.43 0.40 -6.38 16 19 N -0.31 -7.00 3.59 -58.32 -0.21 -7.21 16 20 C 0.26 6.33 5.81 -5.19 -0.03 6.30 16 21 C -0.54 -14.39 9.39 -34.44 -0.32 -14.71 16 22 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 25 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.45 7.71 -51.93 -0.40 1.05 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.16 2.84 5.91 -52.49 -0.31 2.53 16 33 H 0.41 4.36 6.92 -40.82 -0.28 4.08 16 34 H 0.17 1.05 6.14 -52.48 -0.32 0.73 16 35 H 0.20 0.72 7.60 -52.49 -0.40 0.32 16 36 H 0.42 1.63 9.06 45.56 0.41 2.04 16 37 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.06 1.35 7.65 -51.93 -0.40 0.95 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -33.25 356.24 -7.27 -40.52 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -2.51 Total: 4.31 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -4.23 Total: -1.01 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.87 Total: -49.27 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -1.76 Total: -15.57 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.25 -7.27 -40.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350629772.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.090 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds