Wall clock time and date at job start Wed Apr 1 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 117.00453 * 2 1 4 4 C 1.38737 * 120.05441 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94046 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05541 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94249 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.46620 * 90.00649 * 7 6 5 9 9 S 1.65602 * 119.99896 * 165.00471 * 8 7 6 10 10 O 1.42101 * 106.39854 * 311.45252 * 9 8 7 11 11 O 1.42097 * 106.40201 * 178.54079 * 9 8 7 12 12 C 1.76193 * 107.22147 * 64.99463 * 9 8 7 13 13 C 1.38637 * 119.75196 * 269.73006 * 12 9 8 14 14 C 1.37620 * 120.24775 * 179.71997 * 13 12 9 15 15 C 1.40717 * 119.74445 * 0.57253 * 14 13 12 16 16 C 1.41384 * 120.24349 * 179.68021 * 15 14 13 17 17 H 1.08001 * 120.00108 * 204.40423 * 16 15 14 18 18 C 1.39953 * 120.00184 * 24.40714 * 16 15 14 19 19 N 1.30819 * 119.99488 * 17.84698 * 18 16 15 20 20 Si 1.86803 * 119.99976 * 197.84636 * 18 16 15 21 21 H 1.48501 * 109.46987 * 89.99738 * 20 18 16 22 22 H 1.48503 * 109.46877 * 209.99915 * 20 18 16 23 23 H 1.48497 * 109.47068 * 329.99923 * 20 18 16 24 24 C 1.40721 * 119.51097 * 359.70129 * 15 14 13 25 25 C 1.37617 * 119.74747 * 0.02562 * 24 15 14 26 26 C 1.38264 * 120.11394 * 0.25598 * 6 5 4 27 27 C 1.38142 * 120.05525 * 359.44769 * 26 6 5 28 28 H 1.09010 * 109.46822 * 300.00340 * 1 2 3 29 29 H 1.08994 * 109.47404 * 59.99212 * 1 2 3 30 30 H 1.09000 * 109.47768 * 180.02562 * 1 2 3 31 31 H 1.07992 * 120.03047 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.96661 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47416 * 330.00853 * 7 6 5 34 34 H 1.08999 * 109.47422 * 210.00177 * 7 6 5 35 35 H 0.97000 * 120.00083 * 344.99781 * 8 7 6 36 36 H 1.07997 * 119.87477 * 359.97438 * 13 12 9 37 37 H 1.07997 * 120.12384 * 180.27803 * 14 13 12 38 38 H 0.97007 * 119.99317 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.12424 * 179.97438 * 24 15 14 40 40 H 1.07998 * 119.87685 * 179.97438 * 25 24 15 41 41 H 1.07997 * 119.97148 * 179.69935 * 26 6 5 42 42 H 1.08002 * 120.03013 * 180.25356 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2846 -0.0005 5 6 4.0563 2.5167 0.0000 6 6 3.3021 3.6756 0.0016 7 6 3.9864 5.0183 0.0028 8 7 4.2073 5.4549 -1.3781 9 16 4.5949 7.0333 -1.6955 10 8 3.6610 7.8279 -0.9774 11 8 4.7756 7.1271 -3.1018 12 6 6.1708 7.3396 -0.9696 13 6 6.2492 7.8021 0.3350 14 6 7.4750 8.0393 0.9139 15 6 8.6510 7.8221 0.1725 16 6 9.9156 8.0688 0.7546 17 1 10.7658 8.2889 0.1260 18 6 10.0658 8.0276 2.1454 19 7 9.1633 7.4341 2.8834 20 14 11.5549 8.8201 2.9480 21 1 11.2474 10.2363 3.2721 22 1 11.8927 8.0888 4.1955 23 1 12.7083 8.7652 2.0142 24 6 8.5592 7.3580 -1.1528 25 6 7.3229 7.1222 -1.7096 26 6 1.9213 3.6047 0.0080 27 6 1.2917 2.3751 0.0013 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0276 0.0005 31 1 4.0209 0.3798 -0.0014 32 1 5.1347 2.5747 -0.0008 33 1 4.9446 4.9374 0.5159 34 1 3.3587 5.7456 0.5177 35 1 4.1267 4.8194 -2.1065 36 1 5.3451 7.9730 0.9004 37 1 7.5338 8.3952 1.9319 38 1 9.2676 7.4052 3.8474 39 1 9.4554 7.1884 -1.7310 40 1 7.2500 6.7664 -2.7267 41 1 1.3346 4.5113 0.0142 42 1 0.2130 2.3202 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387412246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:57 Heat of formation + Delta-G solvation = -78.275416 kcal Electronic energy + Delta-G solvation = -26933.508394 eV Core-core repulsion = 22970.061268 eV Total energy + Delta-G solvation = -3963.447126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.31204 -38.01338 -37.57455 -36.47648 -35.12255 -34.72736 -34.04313 -31.25494 -30.32759 -30.25891 -29.46824 -27.74922 -25.82419 -25.06556 -22.78412 -21.55989 -21.29349 -21.11055 -18.89491 -18.35882 -17.62314 -17.17452 -16.73669 -16.39021 -16.00651 -15.89090 -15.52272 -15.04518 -14.45456 -14.26405 -14.09737 -14.00138 -13.67090 -13.38952 -13.22568 -12.85674 -12.80809 -12.40934 -12.22888 -12.17718 -12.03270 -11.78337 -11.46714 -11.36774 -11.29619 -11.25848 -11.21259 -11.06495 -10.94321 -10.90139 -10.40154 -9.77314 -9.64849 -9.51903 -9.13714 -9.02686 -8.31136 -7.96323 -7.70737 -7.15512 -4.80882 1.06597 1.22333 1.44155 2.24704 2.87477 2.90718 2.92296 2.93212 3.03543 3.53200 3.65760 3.90832 4.24437 4.52212 4.60503 4.71277 4.75386 4.83793 4.84553 5.14514 5.16988 5.26016 5.28228 5.37788 5.48910 5.60662 5.74083 5.95177 6.06026 6.10463 6.11245 6.15638 6.23946 6.56278 6.61365 6.67566 6.70570 6.91096 7.04544 7.17971 7.31404 7.35286 7.42579 7.63161 7.76725 7.96415 8.31332 8.50761 8.64511 9.75867 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.012980 B = 0.002634 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.677635 B =10629.031802 C =12033.614096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.126 3.874 4 C -0.154 4.154 5 C -0.062 4.062 6 C -0.127 4.127 7 C 0.165 3.835 8 N -1.123 6.123 9 S 2.694 3.306 10 O -0.985 6.985 11 O -0.986 6.986 12 C -0.787 4.787 13 C -0.017 4.017 14 C -0.183 4.183 15 C 0.139 3.861 16 C -0.435 4.435 17 H 0.088 0.912 18 C 0.072 3.928 19 N -0.765 5.765 20 Si 0.917 3.083 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.239 4.239 25 C 0.003 3.997 26 C -0.062 4.062 27 C -0.211 4.211 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.410 0.590 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.289 0.711 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.129 0.871 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 -11.261 -0.470 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.172 4.172 5 C -0.080 4.080 6 C -0.129 4.129 7 C 0.039 3.961 8 N -0.879 5.879 9 S 2.792 3.208 10 O -0.975 6.975 11 O -0.977 6.977 12 C -0.883 4.883 13 C -0.037 4.037 14 C -0.203 4.203 15 C 0.135 3.865 16 C -0.462 4.462 17 H 0.106 0.894 18 C -0.150 4.150 19 N -0.388 5.388 20 Si 0.741 3.259 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.260 4.260 25 C -0.017 4.017 26 C -0.081 4.081 27 C -0.230 4.230 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.243 0.757 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.147 0.853 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.927 -10.812 -0.538 16.107 hybrid contribution 0.983 -0.133 0.573 1.145 sum -10.944 -10.945 0.034 15.478 Atomic orbital electron populations 1.23045 0.78471 1.03825 1.01420 1.86062 1.21345 1.27137 1.88769 1.19084 0.92437 0.84056 0.96389 1.20437 0.91272 0.98730 1.06785 1.21019 1.00407 0.90767 0.95833 1.19838 0.93596 0.94973 1.04504 1.20050 1.00347 0.92836 0.82888 1.55811 1.88181 1.30530 1.13364 1.01206 0.74751 0.71881 0.72912 1.93477 1.62324 1.67051 1.74660 1.93490 1.87742 1.85609 1.30858 1.29153 1.17294 1.33875 1.08017 1.20267 0.97502 0.94147 0.91830 1.21339 0.91159 1.06958 1.00840 1.17860 0.93314 0.84420 0.90885 1.19952 0.96049 1.38538 0.91666 0.89439 1.26133 0.98377 0.92754 0.97727 1.69814 1.33123 1.27911 1.07913 0.86144 0.80846 0.80081 0.78879 1.18784 1.19868 1.18206 1.21051 0.95656 1.11583 0.97685 1.20166 0.92030 0.93344 0.96207 1.20950 0.94026 0.97234 0.95899 1.21212 0.99967 0.92286 1.09546 0.92630 0.92633 0.88340 0.85130 0.84661 0.90364 0.89809 0.75706 0.87866 0.85966 0.89988 0.88220 0.87791 0.85330 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.32 10.50 -19.42 -0.20 -3.53 16 3 C 0.13 1.41 6.69 -39.21 -0.26 1.14 16 4 C -0.15 -1.72 9.99 -39.43 -0.39 -2.12 16 5 C -0.06 -0.71 9.69 -39.61 -0.38 -1.10 16 6 C -0.13 -1.56 5.28 -104.60 -0.55 -2.11 16 7 C 0.16 2.27 6.35 -5.19 -0.03 2.24 16 8 N -1.12 -16.68 5.99 -11.65 -0.07 -16.75 16 9 S 2.69 51.00 5.73 -107.50 -0.62 50.38 16 10 O -0.98 -20.62 16.72 -57.18 -0.96 -21.58 16 11 O -0.99 -20.70 17.26 -57.18 -0.99 -21.69 16 12 C -0.79 -17.00 5.97 -39.28 -0.23 -17.24 16 13 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 14 C -0.18 -4.49 8.70 -38.87 -0.34 -4.82 16 15 C 0.14 3.48 5.57 -106.83 -0.60 2.88 16 16 C -0.43 -10.54 9.05 -37.74 -0.34 -10.88 16 17 H 0.09 2.02 7.91 -52.49 -0.41 1.60 16 18 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 19 N -0.77 -17.83 10.95 55.55 0.61 -17.22 16 20 Si 0.92 16.86 29.60 -169.99 -5.03 11.83 16 21 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 22 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 23 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 24 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 25 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 26 C -0.06 -0.70 9.69 -39.61 -0.38 -1.09 16 27 C -0.21 -2.20 9.04 -39.43 -0.36 -2.55 16 28 H 0.06 0.31 7.66 -51.92 -0.40 -0.09 16 29 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.08 1.15 7.69 -51.93 -0.40 0.75 16 35 H 0.41 5.31 8.64 -34.47 -0.30 5.01 16 36 H 0.10 2.15 7.59 -52.49 -0.40 1.75 16 37 H 0.12 3.04 6.16 -52.49 -0.32 2.71 16 38 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.10 2.08 7.60 -52.49 -0.40 1.68 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -30.48 371.78 -10.79 -41.27 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: -4.11 Total: -39.99 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.54 Total: -33.97 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -2.15 Total: -46.79 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 51.00 SS G_CDS: -0.62 Total: 50.38 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.48 -10.79 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387412246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.010 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds