Wall clock time and date at job start Wed Apr 1 2020 04:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 117.00453 * 2 1 4 4 C 1.38737 * 120.05441 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94046 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05541 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94249 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.46620 * 90.00649 * 7 6 5 9 9 S 1.65602 * 119.99896 * 165.00471 * 8 7 6 10 10 O 1.42101 * 106.39854 * 311.45252 * 9 8 7 11 11 O 1.42097 * 106.40201 * 178.54079 * 9 8 7 12 12 C 1.76193 * 107.22147 * 64.99463 * 9 8 7 13 13 C 1.38637 * 119.75196 * 269.73006 * 12 9 8 14 14 C 1.37620 * 120.24775 * 179.71997 * 13 12 9 15 15 C 1.40717 * 119.74445 * 0.57253 * 14 13 12 16 16 C 1.41384 * 120.24349 * 179.68021 * 15 14 13 17 17 H 1.08001 * 120.00108 * 204.40423 * 16 15 14 18 18 C 1.39953 * 120.00184 * 24.40714 * 16 15 14 19 19 N 1.30819 * 119.99488 * 17.84698 * 18 16 15 20 20 Si 1.86803 * 119.99976 * 197.84636 * 18 16 15 21 21 H 1.48501 * 109.46987 * 89.99738 * 20 18 16 22 22 H 1.48503 * 109.46877 * 209.99915 * 20 18 16 23 23 H 1.48497 * 109.47068 * 329.99923 * 20 18 16 24 24 C 1.40721 * 119.51097 * 359.70129 * 15 14 13 25 25 C 1.37617 * 119.74747 * 0.02562 * 24 15 14 26 26 C 1.38264 * 120.11394 * 0.25598 * 6 5 4 27 27 C 1.38142 * 120.05525 * 359.44769 * 26 6 5 28 28 H 1.09010 * 109.46822 * 300.00340 * 1 2 3 29 29 H 1.08994 * 109.47404 * 59.99212 * 1 2 3 30 30 H 1.09000 * 109.47768 * 180.02562 * 1 2 3 31 31 H 1.07992 * 120.03047 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.96661 * 180.02562 * 5 4 3 33 33 H 1.09001 * 109.47416 * 330.00853 * 7 6 5 34 34 H 1.08999 * 109.47422 * 210.00177 * 7 6 5 35 35 H 0.97000 * 120.00083 * 344.99781 * 8 7 6 36 36 H 1.07997 * 119.87477 * 359.97438 * 13 12 9 37 37 H 1.07997 * 120.12384 * 180.27803 * 14 13 12 38 38 H 0.97007 * 119.99317 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.12424 * 179.97438 * 24 15 14 40 40 H 1.07998 * 119.87685 * 179.97438 * 25 24 15 41 41 H 1.07997 * 119.97148 * 179.69935 * 26 6 5 42 42 H 1.08002 * 120.03013 * 180.25356 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2846 -0.0005 5 6 4.0563 2.5167 0.0000 6 6 3.3021 3.6756 0.0016 7 6 3.9864 5.0183 0.0028 8 7 4.2073 5.4549 -1.3781 9 16 4.5949 7.0333 -1.6955 10 8 3.6610 7.8279 -0.9774 11 8 4.7756 7.1271 -3.1018 12 6 6.1708 7.3396 -0.9696 13 6 6.2492 7.8021 0.3350 14 6 7.4750 8.0393 0.9139 15 6 8.6510 7.8221 0.1725 16 6 9.9156 8.0688 0.7546 17 1 10.7658 8.2889 0.1260 18 6 10.0658 8.0276 2.1454 19 7 9.1633 7.4341 2.8834 20 14 11.5549 8.8201 2.9480 21 1 11.2474 10.2363 3.2721 22 1 11.8927 8.0888 4.1955 23 1 12.7083 8.7652 2.0142 24 6 8.5592 7.3580 -1.1528 25 6 7.3229 7.1222 -1.7096 26 6 1.9213 3.6047 0.0080 27 6 1.2917 2.3751 0.0013 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0276 0.0005 31 1 4.0209 0.3798 -0.0014 32 1 5.1347 2.5747 -0.0008 33 1 4.9446 4.9374 0.5159 34 1 3.3587 5.7456 0.5177 35 1 4.1267 4.8194 -2.1065 36 1 5.3451 7.9730 0.9004 37 1 7.5338 8.3952 1.9319 38 1 9.2676 7.4052 3.8474 39 1 9.4554 7.1884 -1.7310 40 1 7.2500 6.7664 -2.7267 41 1 1.3346 4.5113 0.0142 42 1 0.2130 2.3202 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387412246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:56 Heat of formation + Delta-G solvation = -97.133381 kcal Electronic energy + Delta-G solvation = -26934.326137 eV Core-core repulsion = 22970.061268 eV Total energy + Delta-G solvation = -3964.264869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10581 -39.36337 -38.85652 -38.10271 -36.76664 -35.89067 -35.76443 -32.08719 -32.04420 -31.28549 -31.25443 -28.37782 -27.60288 -26.07113 -23.61204 -23.29174 -22.93214 -22.18838 -20.38588 -19.40583 -19.12399 -18.66436 -18.24701 -17.29398 -17.24928 -17.14567 -16.62759 -16.18350 -15.83000 -15.67724 -15.19457 -15.10328 -14.93770 -14.87977 -14.47970 -14.09969 -13.96084 -13.81868 -13.71510 -13.54812 -13.23992 -13.09356 -12.99506 -12.89126 -12.86970 -12.76978 -12.58564 -12.25870 -11.97593 -11.93231 -11.73887 -11.53109 -11.32620 -11.22197 -10.38145 -9.96986 -9.77720 -9.52899 -9.15319 -8.86160 -6.63381 -0.32868 0.37812 0.40412 0.50204 1.07894 1.36639 1.44365 1.51142 2.12261 2.27590 2.37514 2.53394 2.82719 2.96661 3.55119 3.58712 3.79121 3.85789 3.96051 4.21081 4.33528 4.34582 4.41030 4.41360 4.41733 4.53753 4.62942 4.76187 4.79171 4.87709 4.92266 4.98317 5.09655 5.13035 5.26008 5.27529 5.36012 5.54299 5.61482 5.66364 5.78164 5.78405 5.94905 6.16367 6.19386 6.43563 6.50811 6.69933 6.82770 8.08744 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.012980 B = 0.002634 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.677635 B =10629.031802 C =12033.614096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.121 3.879 4 C -0.164 4.164 5 C -0.067 4.067 6 C -0.139 4.139 7 C 0.162 3.838 8 N -1.106 6.106 9 S 2.727 3.273 10 O -1.001 7.001 11 O -1.003 7.003 12 C -0.796 4.796 13 C -0.019 4.019 14 C -0.207 4.207 15 C 0.110 3.890 16 C -0.466 4.466 17 H 0.090 0.910 18 C 0.035 3.965 19 N -0.793 5.793 20 Si 0.990 3.010 21 H -0.261 1.261 22 H -0.263 1.263 23 H -0.255 1.255 24 C -0.258 4.258 25 C -0.002 4.002 26 C -0.067 4.067 27 C -0.210 4.210 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.422 0.578 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.298 0.702 39 H 0.110 0.890 40 H 0.125 0.875 41 H 0.139 0.861 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 -12.198 -0.408 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.076 3.924 4 C -0.183 4.183 5 C -0.085 4.085 6 C -0.141 4.141 7 C 0.037 3.963 8 N -0.866 5.866 9 S 2.823 3.177 10 O -0.991 6.991 11 O -0.993 6.993 12 C -0.889 4.889 13 C -0.039 4.039 14 C -0.227 4.227 15 C 0.107 3.893 16 C -0.492 4.492 17 H 0.108 0.892 18 C -0.184 4.184 19 N -0.416 5.416 20 Si 0.809 3.191 21 H -0.186 1.186 22 H -0.187 1.187 23 H -0.178 1.178 24 C -0.278 4.278 25 C -0.022 4.022 26 C -0.086 4.086 27 C -0.228 4.228 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.258 0.742 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.143 0.857 41 H 0.157 0.843 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.943 -11.753 -0.482 17.490 hybrid contribution 1.115 0.015 0.514 1.227 sum -11.828 -11.738 0.032 16.664 Atomic orbital electron populations 1.23351 0.76435 1.05588 1.02310 1.86050 1.23507 1.26795 1.88533 1.19259 0.92617 0.84741 0.95828 1.20608 0.91847 0.98909 1.06917 1.21092 1.00682 0.90873 0.95895 1.19707 0.94122 0.94048 1.06225 1.20134 1.00382 0.94019 0.81788 1.55405 1.87338 1.29325 1.14574 1.00234 0.73292 0.72368 0.71806 1.93456 1.62200 1.68468 1.74997 1.93462 1.87686 1.86369 1.31815 1.29636 1.18973 1.32798 1.07477 1.20466 0.97410 0.93510 0.92493 1.21360 0.92039 1.08568 1.00769 1.18210 0.93981 0.85262 0.91857 1.20212 0.96018 1.40050 0.92966 0.89225 1.26969 1.01266 0.92600 0.97600 1.69839 1.34748 1.28314 1.08679 0.85072 0.77061 0.78928 0.78026 1.18553 1.18740 1.17834 1.21270 0.96797 1.12135 0.97609 1.20454 0.91776 0.92769 0.97158 1.21127 0.93703 0.98159 0.95573 1.21449 1.01227 0.91560 1.08602 0.91684 0.91705 0.86328 0.84255 0.84361 0.91015 0.89613 0.74218 0.86459 0.87059 0.89036 0.87222 0.85735 0.84279 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.32 10.50 -92.41 -0.97 -7.29 16 3 C 0.12 2.50 6.69 22.51 0.15 2.65 16 4 C -0.16 -3.51 9.99 22.37 0.22 -3.28 16 5 C -0.07 -1.49 9.69 22.25 0.22 -1.27 16 6 C -0.14 -3.24 5.28 -19.85 -0.10 -3.35 16 7 C 0.16 4.33 6.35 85.63 0.54 4.87 16 8 N -1.11 -31.38 5.99 -190.78 -1.14 -32.52 16 9 S 2.73 100.22 5.73 -56.49 -0.32 99.90 16 10 O -1.00 -40.74 16.72 -128.00 -2.14 -42.88 16 11 O -1.00 -40.63 17.26 -128.00 -2.21 -42.84 16 12 C -0.80 -34.23 5.97 22.46 0.13 -34.10 16 13 C -0.02 -0.86 9.49 22.22 0.21 -0.65 16 14 C -0.21 -10.49 8.70 22.73 0.20 -10.29 16 15 C 0.11 5.69 5.57 -21.29 -0.12 5.57 16 16 C -0.47 -23.17 9.05 23.46 0.21 -22.96 16 17 H 0.09 4.24 7.91 -2.91 -0.02 4.22 16 18 C 0.04 1.62 5.14 85.26 0.44 2.06 16 19 N -0.79 -37.60 10.95 21.83 0.24 -37.37 16 20 Si 0.99 34.40 29.60 68.60 2.03 36.43 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 22 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 23 H -0.25 -8.63 7.11 99.48 0.71 -7.93 16 24 C -0.26 -12.30 9.80 22.73 0.22 -12.07 16 25 C 0.00 -0.08 9.49 22.22 0.21 0.13 16 26 C -0.07 -1.39 9.69 22.25 0.22 -1.17 16 27 C -0.21 -3.89 9.04 22.36 0.20 -3.69 16 28 H 0.06 0.55 7.66 -2.38 -0.02 0.53 16 29 H 0.06 0.55 7.66 -2.39 -0.02 0.53 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 32 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 34 H 0.09 2.26 7.69 -2.39 -0.02 2.24 16 35 H 0.42 10.20 8.64 -96.74 -0.84 9.36 16 36 H 0.12 4.91 7.59 -2.91 -0.02 4.89 16 37 H 0.11 5.76 6.16 -2.91 -0.02 5.74 16 38 H 0.30 12.56 8.30 -92.70 -0.77 11.79 16 39 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.12 4.87 7.60 -2.91 -0.02 4.85 16 41 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.15 1.97 6.30 -2.91 -0.02 1.96 16 Total: -1.00 -65.06 371.78 -0.23 -65.29 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.22 Total: 37.53 kcal Atomic # 6 Polarization: -80.32 SS G_CDS: 4.07 Total: -76.25 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -0.90 Total: -69.89 kcal Atomic # 8 Polarization: -87.69 SS G_CDS: -5.32 Total: -93.01 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Atomic # 16 Polarization: 100.22 SS G_CDS: -0.32 Total: 99.90 kcal Total: -65.06 -0.23 -65.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387412246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.844 kcal (2) G-P(sol) polarization free energy of solvation -65.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds