Wall clock time and date at job start Wed Apr 1 2020 04:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46588 * 198.88570 * 3 2 1 5 5 C 1.34784 * 120.00013 * 259.47296 * 4 3 2 6 6 O 1.21539 * 120.00081 * 181.29383 * 5 4 3 7 7 C 1.47890 * 119.99789 * 1.29535 * 5 4 3 8 8 C 1.39920 * 120.02259 * 23.17510 * 7 5 4 9 9 C 1.38331 * 120.35472 * 180.02562 * 8 7 5 10 10 C 1.37753 * 120.41139 * 359.97438 * 9 8 7 11 11 C 1.40743 * 120.04254 * 359.97438 * 10 9 8 12 12 C 1.41438 * 120.17806 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00158 * 28.90401 * 12 11 10 14 14 C 1.39942 * 119.99823 * 208.90416 * 12 11 10 15 15 N 1.30827 * 120.00118 * 10.53754 * 14 12 11 16 16 Si 1.86801 * 119.99982 * 190.53455 * 14 12 11 17 17 H 1.48499 * 109.46979 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46764 * 120.00257 * 16 14 12 19 19 H 1.48499 * 109.46946 * 240.00039 * 16 14 12 20 20 C 1.38990 * 120.02293 * 202.89987 * 7 5 4 21 21 C 1.46497 * 120.00116 * 79.47633 * 4 3 2 22 22 H 1.09007 * 110.01160 * 178.61955 * 21 4 3 23 23 C 1.53876 * 110.02784 * 299.99734 * 21 4 3 24 24 C 1.54161 * 108.70526 * 166.47476 * 23 21 4 25 25 S 1.82913 * 105.08576 * 332.08981 * 24 23 21 26 26 O 1.42101 * 109.35601 * 115.52666 * 25 24 23 27 27 O 1.42107 * 109.35719 * 248.72768 * 25 24 23 28 28 C 1.55046 * 110.02996 * 57.18888 * 21 4 3 29 29 H 4.40636 * 5.51463 * 179.97438 * 4 1 2 30 30 H 1.08994 * 109.47135 * 318.88195 * 3 2 1 31 31 H 1.09006 * 109.47201 * 78.89004 * 3 2 1 32 32 H 1.07994 * 119.82399 * 0.02562 * 8 7 5 33 33 H 1.07999 * 119.79482 * 180.02562 * 9 8 7 34 34 H 1.08008 * 119.97818 * 179.97438 * 10 9 8 35 35 H 0.96997 * 120.00230 * 180.02562 * 15 14 12 36 36 H 1.07991 * 120.20420 * 359.97438 * 20 7 5 37 37 H 1.09000 * 109.64821 * 286.32644 * 23 21 4 38 38 H 1.08996 * 109.64852 * 46.74695 * 23 21 4 39 39 H 1.09001 * 110.32170 * 90.99666 * 24 23 21 40 40 H 1.09010 * 110.31813 * 213.08844 * 24 23 21 41 41 H 1.08996 * 110.78499 * 316.54706 * 28 21 4 42 42 H 1.09003 * 110.78678 * 80.00751 * 28 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3078 0.4471 5 6 3.5589 2.2134 -0.4561 6 8 3.9854 3.2889 -0.0838 7 6 3.5064 1.8984 -1.9001 8 6 2.6133 0.9309 -2.3736 9 6 2.5589 0.6305 -3.7228 10 6 3.3825 1.2802 -4.6156 11 6 4.2865 2.2571 -4.1581 12 6 5.1330 2.9263 -5.0724 13 1 4.8178 3.0686 -6.0954 14 6 6.3791 3.4041 -4.6512 15 7 6.8513 3.0575 -3.4814 16 14 7.3684 4.5366 -5.7596 17 1 6.6187 4.7752 -7.0190 18 1 7.5973 5.8303 -5.0674 19 1 8.6752 3.9048 -6.0729 20 6 4.3402 2.5672 -2.7885 21 6 3.1591 1.6306 1.8758 22 1 3.5718 2.6284 2.0255 23 6 1.7369 1.5556 2.4585 24 6 1.8322 1.5597 3.9971 25 16 3.4604 0.8170 4.3753 26 8 4.2865 1.7878 5.0033 27 8 3.2691 -0.4528 4.9838 28 6 4.0080 0.5834 2.6418 29 1 -1.0502 -0.0003 -0.0003 30 1 3.0097 -0.7733 0.6758 31 1 3.0095 -0.1972 -1.0085 32 1 1.9630 0.4160 -1.6820 33 1 1.8658 -0.1175 -4.0785 34 1 3.3344 1.0398 -5.6675 35 1 7.7148 3.3890 -3.1894 36 1 5.0276 3.3181 -2.4281 37 1 1.1583 2.4170 2.1249 38 1 1.2524 0.6378 2.1256 39 1 1.7843 2.5803 4.3767 40 1 1.0311 0.9585 4.4276 41 1 3.7812 -0.4254 2.2970 42 1 5.0718 0.7983 2.5398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490617678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:59 Heat of formation + Delta-G solvation = 12.770641 kcal Electronic energy + Delta-G solvation = -28196.382587 eV Core-core repulsion = 24236.883514 eV Total energy + Delta-G solvation = -3959.499073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30945 -37.59674 -37.25577 -36.81997 -36.23238 -34.95645 -33.58964 -32.61246 -30.56056 -29.62009 -29.41969 -27.42674 -25.51974 -25.17212 -22.91043 -21.20111 -20.84854 -19.68172 -19.08886 -18.24049 -17.81974 -17.09811 -16.87659 -16.04801 -15.94062 -15.75853 -15.25097 -15.09208 -15.04218 -14.62972 -14.15412 -14.00319 -13.53104 -13.24608 -13.14602 -12.95436 -12.66687 -12.59603 -12.38174 -12.32968 -12.29639 -12.18324 -11.66073 -11.46418 -11.24838 -11.14828 -11.06065 -10.70218 -10.67210 -10.47394 -10.36811 -10.17373 -10.04380 -9.67602 -9.35552 -9.15008 -8.82961 -7.74778 -7.54712 -6.84127 -4.52191 -0.22666 2.02878 2.19605 2.50351 2.65571 2.77863 3.04023 3.06377 3.08742 3.31172 3.32592 3.57167 3.76912 3.86947 4.11807 4.22858 4.36320 4.44237 4.52636 4.57423 4.70707 5.11771 5.16860 5.23592 5.34424 5.41943 5.46387 5.64960 5.75040 5.79980 5.87920 6.01803 6.20799 6.47164 6.61736 6.88171 6.89766 7.12138 7.26904 7.41381 7.52219 7.61433 7.71775 7.87581 8.06705 8.40577 8.58910 8.72247 8.74351 10.10389 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.003128 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.784053 B = 8948.946429 C =10281.969656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.194 4.194 3 C 0.175 3.825 4 N -0.597 5.597 5 C 0.573 3.427 6 O -0.535 6.535 7 C -0.130 4.130 8 C -0.249 4.249 9 C -0.098 4.098 10 C -0.205 4.205 11 C 0.100 3.900 12 C -0.459 4.459 13 H 0.081 0.919 14 C 0.072 3.928 15 N -0.795 5.795 16 Si 0.914 3.086 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.273 1.273 20 C -0.085 4.085 21 C 0.145 3.855 22 H 0.126 0.874 23 C -0.132 4.132 24 C -0.588 4.588 25 S 2.393 3.607 26 O -0.933 6.933 27 O -0.939 6.939 28 C -0.607 4.607 29 H 0.217 0.783 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.283 0.717 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.056 -6.051 10.307 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C 0.054 3.946 4 N -0.329 5.329 5 C 0.366 3.634 6 O -0.412 6.412 7 C -0.133 4.133 8 C -0.268 4.268 9 C -0.116 4.116 10 C -0.225 4.225 11 C 0.097 3.903 12 C -0.488 4.488 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.420 5.420 16 Si 0.738 3.262 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.199 1.199 20 C -0.105 4.105 21 C 0.039 3.961 22 H 0.144 0.856 23 C -0.172 4.172 24 C -0.718 4.718 25 S 2.575 3.425 26 O -0.930 6.930 27 O -0.936 6.936 28 C -0.737 4.737 29 H 0.234 0.766 30 H 0.108 0.892 31 H 0.175 0.825 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.152 0.848 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.109 -5.619 11.520 15.167 hybrid contribution -0.170 0.534 -1.191 1.317 sum -8.279 -5.085 10.329 14.180 Atomic orbital electron populations 1.24924 0.95858 0.98997 1.01045 1.23383 0.94885 1.01344 0.99939 1.19707 0.83560 0.85355 1.05978 1.47606 1.65108 1.15885 1.04309 1.19069 0.74877 0.82695 0.86743 1.90705 1.45946 1.23497 1.81067 1.19363 1.02124 1.01685 0.90131 1.21481 1.04786 1.04288 0.96225 1.20502 0.98581 0.99306 0.93247 1.21210 1.02914 1.00271 0.98083 1.17613 0.90813 0.89749 0.92088 1.19634 0.99877 1.31549 0.97746 0.90055 1.25941 0.98179 0.95003 0.95496 1.69738 1.18011 1.35549 1.18742 0.86165 0.79330 0.80019 0.80684 1.18401 1.19606 1.19870 1.21654 0.97534 0.98576 0.92712 1.21572 0.93025 0.99307 0.82240 0.85625 1.22442 0.98098 1.06508 0.90115 1.30447 1.22312 1.14292 1.04713 1.08909 0.79073 0.76083 0.78391 1.93641 1.65168 1.61383 1.72776 1.93616 1.85664 1.40445 1.73825 1.31109 1.11128 1.08795 1.22642 0.76613 0.89213 0.82542 0.85464 0.88791 0.88517 0.90563 0.84836 0.88472 0.88682 0.84266 0.84215 0.83950 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 18.84 29.55 0.56 -1.41 16 2 C -0.19 -2.33 8.90 -37.12 -0.33 -2.66 16 3 C 0.18 2.24 5.14 -6.83 -0.04 2.20 16 4 N -0.60 -9.00 2.50 -168.76 -0.42 -9.42 16 5 C 0.57 11.60 7.53 -12.31 -0.09 11.51 16 6 O -0.54 -12.37 15.90 5.33 0.08 -12.28 16 7 C -0.13 -2.86 5.61 -105.04 -0.59 -3.45 16 8 C -0.25 -4.83 7.53 -38.92 -0.29 -5.12 16 9 C -0.10 -1.95 10.01 -39.72 -0.40 -2.35 16 10 C -0.20 -4.60 9.78 -38.81 -0.38 -4.98 16 11 C 0.10 2.52 5.54 -106.87 -0.59 1.92 16 12 C -0.46 -11.62 9.06 -37.73 -0.34 -11.96 16 13 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 14 C 0.07 1.75 5.25 -17.34 -0.09 1.66 16 15 N -0.80 -20.22 10.85 55.55 0.60 -19.62 16 16 Si 0.91 18.31 29.57 -169.99 -5.03 13.28 16 17 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 C -0.08 -2.14 8.19 -38.44 -0.31 -2.45 16 21 C 0.14 1.76 2.97 -66.39 -0.20 1.56 16 22 H 0.13 1.69 6.94 -51.92 -0.36 1.33 16 23 C -0.13 -1.24 5.45 -25.67 -0.14 -1.38 16 24 C -0.59 -4.22 7.26 37.76 0.27 -3.94 16 25 S 2.39 22.89 6.11 -107.50 -0.66 22.24 16 26 O -0.93 -12.35 18.15 -57.71 -1.05 -13.40 16 27 O -0.94 -11.56 18.15 -57.71 -1.05 -12.61 16 28 C -0.61 -5.87 6.77 38.24 0.26 -5.61 16 29 H 0.22 1.49 7.80 -54.08 -0.42 1.07 16 30 H 0.09 0.86 6.22 -51.93 -0.32 0.54 16 31 H 0.16 2.27 4.20 -51.96 -0.22 2.05 16 32 H 0.13 2.08 2.63 -52.49 -0.14 1.94 16 33 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.10 2.03 8.06 -52.48 -0.42 1.60 16 35 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 36 H 0.13 3.68 5.99 -52.49 -0.31 3.36 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 0.84 5.22 -51.93 -0.27 0.57 16 39 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.14 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.14 1.12 6.24 -51.93 -0.32 0.79 16 42 H 0.15 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -33.84 356.48 -9.30 -43.14 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.45 Total: 9.75 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.71 Total: -26.45 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: 0.18 Total: -29.04 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -2.01 Total: -38.29 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Atomic # 16 Polarization: 22.89 SS G_CDS: -0.66 Total: 22.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.84 -9.30 -43.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490617678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.911 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds