Wall clock time and date at job start Wed Apr 1 2020 04:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46588 * 198.88570 * 3 2 1 5 5 C 1.34784 * 120.00013 * 259.47296 * 4 3 2 6 6 O 1.21539 * 120.00081 * 181.29383 * 5 4 3 7 7 C 1.47890 * 119.99789 * 1.29535 * 5 4 3 8 8 C 1.39920 * 120.02259 * 23.17510 * 7 5 4 9 9 C 1.38331 * 120.35472 * 180.02562 * 8 7 5 10 10 C 1.37753 * 120.41139 * 359.97438 * 9 8 7 11 11 C 1.40743 * 120.04254 * 359.97438 * 10 9 8 12 12 C 1.41438 * 120.17806 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00158 * 28.90401 * 12 11 10 14 14 C 1.39942 * 119.99823 * 208.90416 * 12 11 10 15 15 N 1.30827 * 120.00118 * 10.53754 * 14 12 11 16 16 Si 1.86801 * 119.99982 * 190.53455 * 14 12 11 17 17 H 1.48499 * 109.46979 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46764 * 120.00257 * 16 14 12 19 19 H 1.48499 * 109.46946 * 240.00039 * 16 14 12 20 20 C 1.38990 * 120.02293 * 202.89987 * 7 5 4 21 21 C 1.46497 * 120.00116 * 79.47633 * 4 3 2 22 22 H 1.09007 * 110.01160 * 178.61955 * 21 4 3 23 23 C 1.53876 * 110.02784 * 299.99734 * 21 4 3 24 24 C 1.54161 * 108.70526 * 166.47476 * 23 21 4 25 25 S 1.82913 * 105.08576 * 332.08981 * 24 23 21 26 26 O 1.42101 * 109.35601 * 115.52666 * 25 24 23 27 27 O 1.42107 * 109.35719 * 248.72768 * 25 24 23 28 28 C 1.55046 * 110.02996 * 57.18888 * 21 4 3 29 29 H 4.40636 * 5.51463 * 179.97438 * 4 1 2 30 30 H 1.08994 * 109.47135 * 318.88195 * 3 2 1 31 31 H 1.09006 * 109.47201 * 78.89004 * 3 2 1 32 32 H 1.07994 * 119.82399 * 0.02562 * 8 7 5 33 33 H 1.07999 * 119.79482 * 180.02562 * 9 8 7 34 34 H 1.08008 * 119.97818 * 179.97438 * 10 9 8 35 35 H 0.96997 * 120.00230 * 180.02562 * 15 14 12 36 36 H 1.07991 * 120.20420 * 359.97438 * 20 7 5 37 37 H 1.09000 * 109.64821 * 286.32644 * 23 21 4 38 38 H 1.08996 * 109.64852 * 46.74695 * 23 21 4 39 39 H 1.09001 * 110.32170 * 90.99666 * 24 23 21 40 40 H 1.09010 * 110.31813 * 213.08844 * 24 23 21 41 41 H 1.08996 * 110.78499 * 316.54706 * 28 21 4 42 42 H 1.09003 * 110.78678 * 80.00751 * 28 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3078 0.4471 5 6 3.5589 2.2134 -0.4561 6 8 3.9854 3.2889 -0.0838 7 6 3.5064 1.8984 -1.9001 8 6 2.6133 0.9309 -2.3736 9 6 2.5589 0.6305 -3.7228 10 6 3.3825 1.2802 -4.6156 11 6 4.2865 2.2571 -4.1581 12 6 5.1330 2.9263 -5.0724 13 1 4.8178 3.0686 -6.0954 14 6 6.3791 3.4041 -4.6512 15 7 6.8513 3.0575 -3.4814 16 14 7.3684 4.5366 -5.7596 17 1 6.6187 4.7752 -7.0190 18 1 7.5973 5.8303 -5.0674 19 1 8.6752 3.9048 -6.0729 20 6 4.3402 2.5672 -2.7885 21 6 3.1591 1.6306 1.8758 22 1 3.5718 2.6284 2.0255 23 6 1.7369 1.5556 2.4585 24 6 1.8322 1.5597 3.9971 25 16 3.4604 0.8170 4.3753 26 8 4.2865 1.7878 5.0033 27 8 3.2691 -0.4528 4.9838 28 6 4.0080 0.5834 2.6418 29 1 -1.0502 -0.0003 -0.0003 30 1 3.0097 -0.7733 0.6758 31 1 3.0095 -0.1972 -1.0085 32 1 1.9630 0.4160 -1.6820 33 1 1.8658 -0.1175 -4.0785 34 1 3.3344 1.0398 -5.6675 35 1 7.7148 3.3890 -3.1894 36 1 5.0276 3.3181 -2.4281 37 1 1.1583 2.4170 2.1249 38 1 1.2524 0.6378 2.1256 39 1 1.7843 2.5803 4.3767 40 1 1.0311 0.9585 4.4276 41 1 3.7812 -0.4254 2.2970 42 1 5.0718 0.7983 2.5398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490617678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:58 Heat of formation + Delta-G solvation = -10.558881 kcal Electronic energy + Delta-G solvation = -28197.394231 eV Core-core repulsion = 24236.883514 eV Total energy + Delta-G solvation = -3960.510717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68457 -39.11842 -38.25417 -38.15949 -37.14750 -36.16205 -35.16446 -33.60887 -32.04219 -31.31473 -30.47867 -28.53675 -27.19247 -26.23409 -24.22819 -22.91034 -22.01647 -21.01054 -19.92696 -19.59873 -19.00425 -18.18722 -17.95905 -17.44817 -17.16156 -16.83101 -16.72947 -16.38347 -16.27341 -15.44279 -15.41739 -15.19310 -14.88849 -14.68152 -14.59056 -14.32188 -13.98909 -13.81195 -13.41883 -13.38543 -13.28725 -13.19647 -13.01989 -12.88664 -12.79239 -12.43413 -12.27581 -11.97610 -11.94463 -11.90099 -11.49991 -11.35335 -11.28895 -11.13252 -11.01269 -10.71786 -10.08591 -9.46715 -9.31433 -8.63313 -6.41250 -1.01335 0.34052 0.97228 1.31223 1.36690 1.43981 1.51699 1.60165 1.87695 1.93055 2.18961 2.30471 2.54623 2.75867 2.98217 3.26440 3.38450 3.58385 3.61434 3.66171 3.72490 3.90972 3.94269 4.20902 4.41944 4.46720 4.49708 4.62174 4.67628 4.78586 4.85328 4.90561 4.96217 5.07740 5.12529 5.16030 5.28642 5.38602 5.50844 5.79902 5.91244 6.03111 6.16098 6.29317 6.58673 6.68403 6.88266 6.92405 7.07686 8.33051 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.003128 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.784053 B = 8948.946429 C =10281.969656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.241 4.241 3 C 0.170 3.830 4 N -0.583 5.583 5 C 0.567 3.433 6 O -0.579 6.579 7 C -0.139 4.139 8 C -0.222 4.222 9 C -0.098 4.098 10 C -0.208 4.208 11 C 0.068 3.932 12 C -0.497 4.497 13 H 0.082 0.918 14 C 0.028 3.972 15 N -0.835 5.835 16 Si 0.983 3.017 17 H -0.253 1.253 18 H -0.272 1.272 19 H -0.265 1.265 20 C -0.121 4.121 21 C 0.131 3.869 22 H 0.104 0.896 23 C -0.127 4.127 24 C -0.561 4.561 25 S 2.410 3.590 26 O -0.975 6.975 27 O -0.963 6.963 28 C -0.605 4.605 29 H 0.251 0.749 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.168 0.832 33 H 0.138 0.862 34 H 0.108 0.892 35 H 0.285 0.715 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.156 0.844 40 H 0.173 0.827 41 H 0.166 0.834 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 -8.116 11.083 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.242 4.242 3 C 0.049 3.951 4 N -0.314 5.314 5 C 0.359 3.641 6 O -0.460 6.460 7 C -0.143 4.143 8 C -0.240 4.240 9 C -0.116 4.116 10 C -0.228 4.228 11 C 0.066 3.934 12 C -0.527 4.527 13 H 0.100 0.900 14 C -0.185 4.185 15 N -0.462 5.462 16 Si 0.804 3.196 17 H -0.176 1.176 18 H -0.197 1.197 19 H -0.189 1.189 20 C -0.142 4.142 21 C 0.026 3.974 22 H 0.122 0.878 23 C -0.166 4.166 24 C -0.693 4.693 25 S 2.596 3.404 26 O -0.972 6.972 27 O -0.960 6.960 28 C -0.735 4.735 29 H 0.267 0.733 30 H 0.143 0.857 31 H 0.154 0.846 32 H 0.185 0.815 33 H 0.156 0.844 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.174 0.826 40 H 0.191 0.809 41 H 0.183 0.817 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.444 -7.752 12.324 18.519 hybrid contribution 0.609 1.010 -1.317 1.767 sum -10.835 -6.742 11.007 16.853 Atomic orbital electron populations 1.25759 0.96537 0.96393 0.98171 1.23194 0.94828 1.03694 1.02484 1.19703 0.84889 0.84661 1.05803 1.47510 1.63345 1.15647 1.04883 1.18905 0.75232 0.83039 0.86929 1.90674 1.48118 1.25568 1.81609 1.19663 1.01744 1.01664 0.91180 1.22047 1.03124 1.01900 0.96950 1.20976 0.98331 0.99392 0.92914 1.21493 1.02381 0.99623 0.99329 1.17929 0.92095 0.91125 0.92281 1.19877 1.01013 1.33803 0.98012 0.90023 1.26779 0.98943 0.96010 0.96757 1.69847 1.18534 1.37226 1.20591 0.85134 0.77949 0.77694 0.78815 1.17612 1.19695 1.18943 1.21429 0.99173 0.99838 0.93764 1.21829 0.95688 0.99172 0.80760 0.87759 1.22405 0.95694 1.07316 0.91233 1.30317 1.20280 1.15619 1.03128 1.08269 0.79638 0.74973 0.77499 1.93588 1.67431 1.62294 1.73904 1.93581 1.86277 1.41752 1.74408 1.31114 1.10681 1.09205 1.22501 0.73252 0.85669 0.84566 0.81544 0.84434 0.87354 0.90494 0.88469 0.88439 0.87143 0.82578 0.80877 0.81668 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 18.84 74.32 1.40 -0.86 16 2 C -0.24 -4.71 8.90 31.13 0.28 -4.43 16 3 C 0.17 3.86 5.14 84.57 0.44 4.29 16 4 N -0.58 -17.06 2.50 -806.10 -2.01 -19.07 16 5 C 0.57 23.64 7.53 86.80 0.65 24.29 16 6 O -0.58 -28.47 15.90 -3.84 -0.06 -28.53 16 7 C -0.14 -6.30 5.61 -20.13 -0.11 -6.41 16 8 C -0.22 -8.25 7.53 22.70 0.17 -8.08 16 9 C -0.10 -3.69 10.01 22.18 0.22 -3.47 16 10 C -0.21 -9.37 9.78 22.77 0.22 -9.15 16 11 C 0.07 3.59 5.54 -21.32 -0.12 3.47 16 12 C -0.50 -26.61 9.06 23.47 0.21 -26.40 16 13 H 0.08 4.15 7.87 -2.91 -0.02 4.13 16 14 C 0.03 1.47 5.25 85.26 0.45 1.91 16 15 N -0.84 -45.62 10.85 21.83 0.24 -45.38 16 16 Si 0.98 39.34 29.57 68.60 2.03 41.37 16 17 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 20 C -0.12 -6.54 8.19 23.01 0.19 -6.35 16 21 C 0.13 3.04 2.97 45.99 0.14 3.18 16 22 H 0.10 2.90 6.94 -2.38 -0.02 2.88 16 23 C -0.13 -1.97 5.45 31.28 0.17 -1.80 16 24 C -0.56 -5.94 7.26 72.38 0.53 -5.41 16 25 S 2.41 42.19 6.11 -56.49 -0.34 41.85 16 26 O -0.98 -25.63 18.15 -127.49 -2.31 -27.94 16 27 O -0.96 -21.77 18.15 -127.49 -2.31 -24.08 16 28 C -0.61 -10.93 6.77 72.68 0.49 -10.44 16 29 H 0.25 1.75 7.80 -4.41 -0.03 1.71 16 30 H 0.13 1.94 6.22 -2.39 -0.01 1.92 16 31 H 0.14 3.63 4.20 -2.41 -0.01 3.62 16 32 H 0.17 4.89 2.63 -2.91 -0.01 4.88 16 33 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 36 H 0.10 5.88 5.99 -2.92 -0.02 5.87 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 1.41 5.22 -2.39 -0.01 1.40 16 39 H 0.16 1.29 8.14 -2.39 -0.02 1.28 16 40 H 0.17 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.17 2.14 6.24 -2.39 -0.01 2.12 16 42 H 0.14 2.72 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -80.56 356.48 1.62 -78.94 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 1.08 Total: 28.52 kcal Atomic # 6 Polarization: -50.99 SS G_CDS: 5.32 Total: -45.66 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -1.78 Total: -64.46 kcal Atomic # 8 Polarization: -75.87 SS G_CDS: -4.69 Total: -80.56 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Atomic # 16 Polarization: 42.19 SS G_CDS: -0.34 Total: 41.85 kcal Total: -80.56 1.62 -78.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490617678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.380 kcal (2) G-P(sol) polarization free energy of solvation -80.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds