Wall clock time and date at job start Wed Apr 1 2020 04:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46759 * 2 1 4 4 C 1.53006 * 109.47060 * 119.99354 * 2 1 3 5 5 C 1.50699 * 109.47126 * 295.00217 * 4 2 1 6 6 H 1.08002 * 120.00022 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00053 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00108 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47125 * 90.00676 * 9 7 5 11 11 H 1.48497 * 109.47073 * 210.00432 * 9 7 5 12 12 H 1.48494 * 109.46987 * 330.00202 * 9 7 5 13 13 C 1.52991 * 109.47437 * 239.99467 * 2 1 3 14 14 N 1.46898 * 109.47309 * 64.99752 * 13 2 1 15 15 C 1.46898 * 111.00318 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47134 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.46876 * 60.00224 * 16 15 14 18 18 O 1.42900 * 109.47502 * 300.00010 * 16 15 14 19 19 C 1.52997 * 109.46964 * 180.02562 * 16 15 14 20 20 S 1.81404 * 109.47054 * 185.00251 * 19 16 15 21 21 O 1.42098 * 110.54475 * 68.37379 * 20 19 16 22 22 O 1.42103 * 110.54048 * 291.62499 * 20 19 16 23 23 C 1.76201 * 104.44907 * 180.02562 * 20 19 16 24 24 C 1.33390 * 125.20615 * 90.00255 * 23 20 19 25 25 C 1.38425 * 114.92123 * 179.97438 * 24 23 20 26 26 C 1.33383 * 114.92174 * 359.97438 * 25 24 23 27 27 S 1.75887 * 109.59638 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47140 * 300.00340 * 1 2 3 29 29 H 1.08997 * 109.46974 * 60.00927 * 1 2 3 30 30 H 1.09000 * 109.46808 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46694 * 55.00167 * 4 2 1 32 32 H 1.08996 * 109.47383 * 175.00442 * 4 2 1 33 33 H 0.97000 * 120.00348 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.47075 * 305.00307 * 13 2 1 35 35 H 1.08999 * 109.47555 * 184.99899 * 13 2 1 36 36 H 1.00908 * 110.99711 * 56.04668 * 14 13 2 37 37 H 1.09000 * 109.47056 * 60.00448 * 15 14 13 38 38 H 1.08999 * 109.47058 * 300.00032 * 15 14 13 39 39 H 0.96698 * 114.00238 * 300.00543 * 18 16 15 40 40 H 1.09000 * 109.47500 * 65.00193 * 19 16 15 41 41 H 1.08996 * 109.47563 * 304.99982 * 19 16 15 42 42 H 1.07997 * 122.53530 * 0.23951 * 24 23 20 43 43 H 1.08001 * 122.53542 * 180.02562 * 25 24 23 44 44 H 1.07999 * 125.20481 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6413 0.0573 2.4766 6 1 1.0799 0.9744 2.3756 7 6 1.9923 -0.4019 3.7284 8 7 2.6755 -1.5189 3.8514 9 14 1.4986 0.5634 5.2496 10 1 0.1711 0.0961 5.7232 11 1 2.5077 0.3528 6.3185 12 1 1.4248 2.0086 4.9165 13 6 2.0401 -0.7213 -1.2491 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6268 -3.6670 16 6 1.7035 0.1911 -4.8891 17 1 2.1375 1.1890 -4.8260 18 8 0.2786 0.2928 -4.9250 19 6 2.1972 -0.5008 -6.1612 20 16 1.8265 0.5413 -7.5991 21 8 2.6184 1.7210 -7.5773 22 8 0.4243 0.6041 -7.8211 23 6 2.4432 -0.3715 -8.9743 24 6 1.7455 -1.2615 -9.6817 25 6 2.4412 -1.8552 -10.7207 26 6 3.7036 -1.4469 -10.8575 27 16 4.0721 -0.2465 -9.6259 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -1.7197 1.2953 32 1 3.1263 -0.7993 1.2058 33 1 2.9228 -1.8418 4.7321 34 1 1.6054 -1.7199 -1.2949 35 1 3.1264 -0.7995 -1.2054 36 1 1.9882 0.9871 -2.3967 37 1 1.6923 -1.6249 -3.7298 38 1 3.2128 -0.7039 -3.6398 39 1 -0.1752 -0.5592 -4.9812 40 1 1.6951 -1.4622 -6.2702 41 1 3.2736 -0.6586 -6.0948 42 1 0.7146 -1.4977 -9.4630 43 1 1.9953 -2.5925 -11.3719 44 1 4.3940 -1.7995 -11.6095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602572992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:53 Heat of formation + Delta-G solvation = -97.205444 kcal Electronic energy + Delta-G solvation = -25213.815509 eV Core-core repulsion = 21384.991467 eV Total energy + Delta-G solvation = -3828.824042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.51265 -38.39435 -37.34955 -36.44843 -36.24575 -33.83788 -32.19578 -31.28629 -30.45533 -27.30691 -26.42312 -25.01974 -24.34761 -22.35473 -22.08564 -20.70555 -19.57664 -19.15954 -18.56657 -17.29966 -16.84200 -16.58089 -16.34007 -15.84925 -15.66707 -15.29664 -14.85017 -14.80563 -14.53636 -13.99001 -13.77820 -13.63797 -13.49530 -13.08619 -12.95680 -12.66445 -12.37406 -12.31784 -12.25825 -12.13945 -11.89694 -11.67269 -11.50367 -11.36666 -11.34500 -11.25131 -10.83203 -10.76327 -10.50409 -10.27552 -10.17051 -9.86150 -9.70077 -9.14517 -9.13524 -8.95402 -8.32768 -8.18709 -5.97673 -3.98628 -0.45477 -0.00097 0.87912 1.22732 1.91536 2.48785 3.33799 3.36978 3.39998 3.43696 3.69742 3.85732 4.09619 4.31367 4.35875 4.47091 4.59639 4.65577 4.71592 4.81513 4.97858 5.02078 5.22640 5.38253 5.41335 5.44086 5.57050 5.67878 5.70559 5.85349 6.14293 6.39250 6.53301 6.70169 6.99132 7.17074 7.20341 7.28481 7.37497 7.58047 7.69089 7.84516 8.02461 8.46721 9.07763 9.64866 11.13841 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.029442 B = 0.001688 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.800564 B =16583.454998 C =16895.200645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.679 5.679 15 C 0.035 3.965 16 C 0.120 3.880 17 H 0.114 0.886 18 O -0.537 6.537 19 C -0.644 4.644 20 S 2.530 3.470 21 O -0.930 6.930 22 O -0.913 6.913 23 C -0.782 4.782 24 C 0.002 3.998 25 C -0.164 4.164 26 C -0.176 4.176 27 S 0.213 5.787 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.016 0.984 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.341 0.659 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.382 0.618 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.158 0.842 43 H 0.151 0.849 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 -2.929 -32.603 32.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.102 4.102 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.310 5.310 15 C -0.096 4.096 16 C 0.058 3.942 17 H 0.131 0.869 18 O -0.342 6.342 19 C -0.775 4.775 20 S 2.706 3.294 21 O -0.928 6.928 22 O -0.911 6.911 23 C -0.982 4.982 24 C -0.033 4.033 25 C -0.195 4.195 26 C -0.314 4.314 27 S 0.478 5.522 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.159 0.841 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.231 0.769 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.175 0.825 43 H 0.168 0.832 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.979 -1.049 -32.181 32.335 hybrid contribution 0.042 -1.870 0.286 1.892 sum 3.022 -2.919 -31.894 32.170 Atomic orbital electron populations 1.21591 0.95565 1.00536 1.00367 1.21208 0.96169 0.98963 0.93867 0.92732 1.19123 0.95851 0.95565 0.90478 1.21244 1.34519 1.08321 0.90964 0.92507 1.25028 0.95334 0.95125 0.99135 1.69966 1.39137 1.21305 1.23353 0.86614 0.78203 0.80449 0.82861 1.20711 1.21350 1.19894 1.22183 0.97133 0.97716 0.89410 1.60438 1.63920 1.05790 1.00838 1.22556 0.98241 0.98475 0.90351 1.21606 0.83057 0.99803 0.89734 0.86861 1.86708 1.15783 1.35510 1.96232 1.31148 1.13107 1.16471 1.16769 1.04786 0.74855 0.74992 0.74815 1.93593 1.71322 1.41643 1.86210 1.93591 1.28313 1.85267 1.83908 1.35790 1.09571 1.24104 1.28765 1.20133 1.00590 0.90747 0.91862 1.20471 0.94254 1.03936 1.00810 1.26299 1.00828 1.00694 1.03557 1.84356 1.06497 1.37193 1.24105 0.92785 0.93639 0.94257 0.96597 0.96980 0.93125 0.91541 0.95745 0.84146 0.90316 0.94253 0.76938 0.83869 0.83601 0.82475 0.83152 0.80851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 1.05 5.07 -3.83 -0.02 1.03 16 14 N -0.68 -9.17 5.82 -113.79 -0.66 -9.84 16 15 C 0.04 0.35 5.35 -3.82 -0.02 0.33 16 16 C 0.12 1.08 3.17 -26.73 -0.08 0.99 16 17 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 18 O -0.54 -5.68 12.53 -36.23 -0.45 -6.14 16 19 C -0.64 -3.90 5.64 37.16 0.21 -3.69 16 20 S 2.53 23.14 5.15 -107.50 -0.55 22.59 16 21 O -0.93 -11.46 17.77 -57.54 -1.02 -12.48 16 22 O -0.91 -10.89 17.15 -59.93 -1.03 -11.92 16 23 C -0.78 -6.13 6.23 29.04 0.18 -5.95 16 24 C 0.00 0.01 9.78 -41.21 -0.40 -0.39 16 25 C -0.16 -0.85 10.18 -41.21 -0.42 -1.27 16 26 C -0.18 -0.88 11.23 29.04 0.33 -0.55 16 27 S 0.21 1.47 23.14 -107.50 -2.49 -1.01 16 28 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 29 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.34 4.48 8.73 -39.29 -0.34 4.14 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 2.76 9.04 45.56 0.41 3.17 16 40 H 0.14 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.15 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.16 0.77 8.01 -52.49 -0.42 0.35 16 43 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.17 0.37 8.06 -52.49 -0.42 -0.05 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -36.57 393.58 -11.31 -47.89 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.12 Total: 0.52 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -0.64 Total: -26.07 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.07 Total: -36.05 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -2.50 Total: -30.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 24.62 SS G_CDS: -3.04 Total: 21.58 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.57 -11.31 -47.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602572992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.319 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds