Wall clock time and date at job start Wed Apr 1 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00129 * 2 1 4 4 H 1.48501 * 109.46827 * 270.00029 * 3 2 1 5 5 H 1.48491 * 109.47408 * 29.99772 * 3 2 1 6 6 H 1.48503 * 109.47144 * 150.00111 * 3 2 1 7 7 C 1.37875 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00234 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99994 * 170.00430 * 10 9 7 12 12 C 1.53244 * 109.34048 * 187.25614 * 11 10 9 13 13 N 1.47075 * 108.51815 * 306.16547 * 12 11 10 14 14 C 1.34780 * 120.88130 * 231.18850 * 13 12 11 15 15 O 1.21585 * 119.99574 * 184.99591 * 14 13 12 16 16 N 1.34775 * 120.00016 * 4.99333 * 14 13 12 17 17 C 1.39075 * 119.99901 * 174.88908 * 16 14 13 18 18 N 1.29884 * 125.65631 * 359.97019 * 17 16 14 19 19 N 1.26247 * 117.66233 * 180.02562 * 18 17 16 20 20 C 1.29510 * 116.58384 * 0.02562 * 19 18 17 21 21 C 1.50701 * 126.14647 * 179.97438 * 20 19 18 22 22 F 1.39905 * 109.46763 * 30.02599 * 21 20 19 23 23 F 1.39898 * 109.46819 * 150.02382 * 21 20 19 24 24 S 1.71310 * 125.65141 * 180.31446 * 17 16 14 25 25 C 1.47084 * 118.23873 * 51.45875 * 13 12 11 26 26 C 1.46898 * 111.00020 * 294.29957 * 10 9 7 27 27 H 0.97001 * 119.99471 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46902 * 60.00139 * 9 7 2 29 29 H 1.09000 * 109.47196 * 300.00059 * 9 7 2 30 30 H 1.08999 * 109.49798 * 67.29181 * 11 10 9 31 31 H 1.09008 * 109.49053 * 307.20892 * 11 10 9 32 32 H 1.08995 * 109.62794 * 186.45922 * 12 11 10 33 33 H 1.08998 * 109.62617 * 65.87577 * 12 11 10 34 34 H 0.96999 * 119.99685 * 354.88634 * 16 14 13 35 35 H 1.08993 * 109.47301 * 270.02732 * 21 20 19 36 36 H 1.09001 * 109.62761 * 68.25150 * 25 13 12 37 37 H 1.08998 * 109.63078 * 188.83317 * 25 13 12 38 38 H 1.08999 * 109.49944 * 292.70668 * 26 10 9 39 39 H 1.09000 * 109.48890 * 52.76464 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5211 -4.8935 0.2386 12 6 2.5637 -6.0033 0.4115 13 7 3.4614 -5.9863 -0.7534 14 6 3.7117 -7.1125 -1.4503 15 8 4.5256 -7.1001 -2.3535 16 7 3.0599 -8.2522 -1.1460 17 6 3.2383 -9.3861 -1.9312 18 7 4.0024 -9.4696 -2.9781 19 7 4.0514 -10.5776 -3.5812 20 6 3.3277 -11.5349 -3.0944 21 6 3.2236 -12.9360 -3.6395 22 9 4.4284 -13.2861 -4.2587 23 9 2.9619 -13.8256 -2.5920 24 16 2.4801 -10.9021 -1.6827 25 6 4.0837 -4.7091 -1.1339 26 6 2.9766 -3.6492 -1.2494 27 1 -0.4849 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 0.8795 -5.1264 -0.6112 31 1 0.9159 -4.8191 1.1422 32 1 2.0630 -6.9695 0.4738 33 1 3.1392 -5.8266 1.3201 34 1 2.4665 -8.2815 -0.3793 35 1 2.4138 -12.9835 -4.3674 36 1 4.8026 -4.4104 -0.3710 37 1 4.5885 -4.8192 -2.0936 38 1 2.3148 -3.8993 -2.0785 39 1 3.4267 -2.6721 -1.4252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602818939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:39 Heat of formation + Delta-G solvation = -21.652361 kcal Electronic energy + Delta-G solvation = -27356.621949 eV Core-core repulsion = 22905.986156 eV Total energy + Delta-G solvation = -4450.635794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.59781 -47.61784 -41.82428 -40.57034 -38.00158 -35.70666 -34.66663 -32.55364 -31.98123 -30.90254 -28.81024 -27.82712 -25.89017 -25.23978 -23.56230 -22.86144 -21.81209 -20.71349 -20.40694 -19.23556 -18.52512 -18.24243 -17.99411 -17.41055 -16.51636 -16.47528 -16.28536 -15.63550 -15.34747 -14.81092 -14.63742 -14.45333 -14.20339 -14.07216 -13.98062 -13.94688 -13.71774 -13.56345 -13.31349 -12.46535 -12.39168 -12.13603 -11.85165 -11.44083 -11.33175 -11.08068 -10.96287 -10.87644 -10.82776 -10.70521 -10.63205 -10.21802 -10.13422 -9.96972 -9.38934 -9.32216 -8.68289 -8.53326 -7.47880 -6.13441 -4.15636 -0.19108 -0.10102 0.54101 1.95793 2.06219 2.76296 2.93799 3.25156 3.26064 3.32843 3.36410 3.44653 3.99851 4.17220 4.28367 4.31424 4.54328 4.72710 4.92632 5.08697 5.18261 5.24344 5.41840 5.49570 5.62711 5.68267 5.84348 6.00088 6.10731 6.25519 6.40629 6.59115 7.09199 7.16252 7.37256 7.64911 7.88563 8.00555 8.04951 8.22666 8.36587 8.91390 9.49479 10.97297 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.035229 B = 0.001919 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.599746 B =14587.488704 C =14974.782124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.534 5.534 11 C 0.040 3.960 12 C 0.113 3.887 13 N -0.613 5.613 14 C 0.699 3.301 15 O -0.525 6.525 16 N -0.633 5.633 17 C 0.268 3.732 18 N -0.268 5.268 19 N -0.173 5.173 20 C -0.115 4.115 21 C 0.373 3.627 22 F -0.176 7.176 23 F -0.188 7.188 24 S 0.171 5.829 25 C 0.132 3.868 26 C 0.049 3.951 27 H 0.262 0.738 28 H -0.008 1.008 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.422 0.578 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.027 0.973 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 -25.763 -1.270 25.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.010 4.010 13 N -0.350 5.350 14 C 0.398 3.602 15 O -0.396 6.396 16 N -0.290 5.290 17 C -0.102 4.102 18 N -0.115 5.115 19 N -0.012 5.012 20 C -0.398 4.398 21 C 0.314 3.686 22 F -0.157 7.157 23 F -0.169 7.169 24 S 0.410 5.590 25 C 0.010 3.990 26 C -0.080 4.080 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.264 0.736 35 H 0.162 0.838 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.045 0.955 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.248 -25.235 -1.677 25.390 hybrid contribution -0.575 0.852 -0.023 1.028 sum 1.674 -24.383 -1.700 24.499 Atomic orbital electron populations 1.69952 1.06107 1.26958 1.50649 1.24995 0.94887 0.99438 0.95244 0.86479 0.79800 0.82928 0.78125 1.20669 1.21242 1.19697 1.21120 0.93520 0.89787 1.50564 0.91717 1.19735 0.89940 0.87122 0.96250 1.62101 1.27939 1.02371 1.33550 1.22391 0.94527 0.90898 1.01198 1.21915 0.92072 0.98214 0.88791 1.47515 1.49158 1.07465 1.30892 1.15848 0.81657 0.79714 0.83013 1.91087 1.34502 1.82674 1.31301 1.42439 1.48511 1.07420 1.30609 1.25898 0.96810 0.92869 0.94626 1.71741 1.19515 1.14212 1.05989 1.71433 1.13830 0.94007 1.21959 1.30431 1.05607 1.03056 1.00734 1.19444 0.86280 0.78942 0.83886 1.93092 1.48200 1.92061 1.82372 1.93069 1.94089 1.69489 1.60270 1.84804 1.43871 1.02181 1.28154 1.22012 0.95595 0.79551 1.01820 1.22482 0.95125 0.99257 0.91103 0.92819 0.99048 0.94961 0.95358 0.89695 0.91664 0.89665 0.73621 0.83762 0.90383 0.88912 0.95499 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.51 -13.49 8.41 -34.44 -0.29 -13.78 16 8 H 0.06 1.68 7.13 -52.48 -0.37 1.31 16 9 C 0.19 4.67 4.72 -4.98 -0.02 4.65 16 10 N -0.53 -10.19 4.62 -235.46 -1.09 -11.27 16 11 C 0.04 0.58 5.62 -3.70 -0.02 0.56 16 12 C 0.11 1.25 6.59 -3.60 -0.02 1.23 16 13 N -0.61 -8.32 3.00 -177.91 -0.53 -8.85 16 14 C 0.70 10.12 8.27 -86.92 -0.72 9.40 16 15 O -0.53 -9.77 14.52 5.29 0.08 -9.69 16 16 N -0.63 -6.84 5.32 -17.32 -0.09 -6.93 16 17 C 0.27 3.13 8.14 -87.07 -0.71 2.42 16 18 N -0.27 -4.08 9.75 29.97 0.29 -3.78 16 19 N -0.17 -2.34 11.58 33.58 0.39 -1.95 16 20 C -0.12 -1.09 7.36 -13.26 -0.10 -1.19 16 21 C 0.37 2.43 5.86 36.01 0.21 2.64 16 22 F -0.18 -1.60 17.27 2.25 0.04 -1.56 16 23 F -0.19 -1.28 17.14 2.25 0.04 -1.24 16 24 S 0.17 1.29 23.10 -107.50 -2.48 -1.20 16 25 C 0.13 1.99 6.61 -3.36 -0.02 1.97 16 26 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 29 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 1.18 7.99 -51.92 -0.41 0.76 16 32 H 0.07 0.46 5.63 -51.93 -0.29 0.17 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.42 2.92 6.32 -40.82 -0.26 2.66 16 35 H 0.15 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.43 7.09 -51.93 -0.37 1.06 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 1.94 6.67 -51.93 -0.35 1.60 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -34.58 348.90 -8.34 -42.92 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.14 Total: -2.81 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -1.81 Total: 10.18 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.30 Total: -57.68 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.08 Total: -2.80 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.48 Total: -1.20 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.58 -8.34 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602818939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.267 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds