Wall clock time and date at job start Wed Apr 1 2020 04:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00129 * 2 1 4 4 H 1.48501 * 109.46827 * 270.00029 * 3 2 1 5 5 H 1.48491 * 109.47408 * 29.99772 * 3 2 1 6 6 H 1.48503 * 109.47144 * 150.00111 * 3 2 1 7 7 C 1.37875 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00234 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99994 * 170.00430 * 10 9 7 12 12 C 1.53244 * 109.34048 * 187.25614 * 11 10 9 13 13 N 1.47075 * 108.51815 * 306.16547 * 12 11 10 14 14 C 1.34780 * 120.88130 * 231.18850 * 13 12 11 15 15 O 1.21585 * 119.99574 * 184.99591 * 14 13 12 16 16 N 1.34775 * 120.00016 * 4.99333 * 14 13 12 17 17 C 1.39075 * 119.99901 * 174.88908 * 16 14 13 18 18 N 1.29884 * 125.65631 * 359.97019 * 17 16 14 19 19 N 1.26247 * 117.66233 * 180.02562 * 18 17 16 20 20 C 1.29510 * 116.58384 * 0.02562 * 19 18 17 21 21 C 1.50701 * 126.14647 * 179.97438 * 20 19 18 22 22 F 1.39905 * 109.46763 * 30.02599 * 21 20 19 23 23 F 1.39898 * 109.46819 * 150.02382 * 21 20 19 24 24 S 1.71310 * 125.65141 * 180.31446 * 17 16 14 25 25 C 1.47084 * 118.23873 * 51.45875 * 13 12 11 26 26 C 1.46898 * 111.00020 * 294.29957 * 10 9 7 27 27 H 0.97001 * 119.99471 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46902 * 60.00139 * 9 7 2 29 29 H 1.09000 * 109.47196 * 300.00059 * 9 7 2 30 30 H 1.08999 * 109.49798 * 67.29181 * 11 10 9 31 31 H 1.09008 * 109.49053 * 307.20892 * 11 10 9 32 32 H 1.08995 * 109.62794 * 186.45922 * 12 11 10 33 33 H 1.08998 * 109.62617 * 65.87577 * 12 11 10 34 34 H 0.96999 * 119.99685 * 354.88634 * 16 14 13 35 35 H 1.08993 * 109.47301 * 270.02732 * 21 20 19 36 36 H 1.09001 * 109.62761 * 68.25150 * 25 13 12 37 37 H 1.08998 * 109.63078 * 188.83317 * 25 13 12 38 38 H 1.08999 * 109.49944 * 292.70668 * 26 10 9 39 39 H 1.09000 * 109.48890 * 52.76464 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5211 -4.8935 0.2386 12 6 2.5637 -6.0033 0.4115 13 7 3.4614 -5.9863 -0.7534 14 6 3.7117 -7.1125 -1.4503 15 8 4.5256 -7.1001 -2.3535 16 7 3.0599 -8.2522 -1.1460 17 6 3.2383 -9.3861 -1.9312 18 7 4.0024 -9.4696 -2.9781 19 7 4.0514 -10.5776 -3.5812 20 6 3.3277 -11.5349 -3.0944 21 6 3.2236 -12.9360 -3.6395 22 9 4.4284 -13.2861 -4.2587 23 9 2.9619 -13.8256 -2.5920 24 16 2.4801 -10.9021 -1.6827 25 6 4.0837 -4.7091 -1.1339 26 6 2.9766 -3.6492 -1.2494 27 1 -0.4849 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 0.8795 -5.1264 -0.6112 31 1 0.9159 -4.8191 1.1422 32 1 2.0630 -6.9695 0.4738 33 1 3.1392 -5.8266 1.3201 34 1 2.4665 -8.2815 -0.3793 35 1 2.4138 -12.9835 -4.3674 36 1 4.8026 -4.4104 -0.3710 37 1 4.5885 -4.8192 -2.0936 38 1 2.3148 -3.8993 -2.0785 39 1 3.4267 -2.6721 -1.4252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602818939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:38 Heat of formation + Delta-G solvation = -47.286137 kcal Electronic energy + Delta-G solvation = -27357.733513 eV Core-core repulsion = 22905.986156 eV Total energy + Delta-G solvation = -4451.747358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.15386 -48.18997 -42.71456 -41.62897 -39.31113 -36.72608 -36.12298 -34.43363 -32.85718 -32.07580 -30.21120 -28.86428 -27.35438 -26.16613 -24.76058 -24.18144 -23.21999 -21.77507 -21.36558 -20.20752 -19.40274 -18.98791 -18.74076 -18.45345 -18.03356 -17.43337 -17.14618 -16.92929 -16.48023 -16.35801 -16.00414 -15.47963 -15.42086 -15.22572 -15.02549 -14.76444 -14.60167 -14.53391 -14.18265 -14.07690 -13.63681 -13.17609 -13.06500 -12.77277 -12.71956 -12.58526 -12.44321 -12.36328 -12.21004 -11.91620 -11.77002 -11.68915 -11.31725 -11.10275 -10.89512 -10.62258 -10.28617 -9.80381 -9.07814 -8.21261 -6.30402 -0.94615 -0.82065 -0.20810 1.05331 1.18427 1.42670 1.43132 1.54452 1.87476 2.07598 2.38974 2.40601 2.98899 3.11161 3.19464 3.33670 3.44864 3.80954 3.84142 3.97606 4.03553 4.08190 4.21500 4.39653 4.47189 4.65368 4.67664 4.81016 4.92660 4.98531 5.07561 5.18262 5.29216 5.44040 5.64366 6.03020 6.20229 6.39459 6.57519 6.85280 7.04028 7.36824 7.39425 8.89579 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.035229 B = 0.001919 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.599746 B =14587.488704 C =14974.782124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.537 5.537 11 C 0.035 3.965 12 C 0.120 3.880 13 N -0.613 5.613 14 C 0.701 3.299 15 O -0.572 6.572 16 N -0.619 5.619 17 C 0.236 3.764 18 N -0.320 5.320 19 N -0.218 5.218 20 C -0.117 4.117 21 C 0.370 3.630 22 F -0.193 7.193 23 F -0.187 7.187 24 S 0.280 5.720 25 C 0.145 3.855 26 C 0.056 3.944 27 H 0.264 0.736 28 H -0.041 1.041 29 H 0.014 0.986 30 H 0.022 0.978 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.441 0.559 35 H 0.195 0.805 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.011 0.989 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 -27.916 -0.006 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.262 5.262 11 C -0.094 4.094 12 C -0.002 4.002 13 N -0.350 5.350 14 C 0.400 3.600 15 O -0.446 6.446 16 N -0.278 5.278 17 C -0.134 4.134 18 N -0.166 5.166 19 N -0.056 5.056 20 C -0.400 4.400 21 C 0.313 3.687 22 F -0.174 7.174 23 F -0.169 7.169 24 S 0.519 5.481 25 C 0.022 3.978 26 C -0.073 4.073 27 H 0.072 0.928 28 H -0.024 1.024 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.286 0.714 35 H 0.212 0.788 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.029 0.971 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.909 -27.445 -0.376 27.514 hybrid contribution -0.571 1.331 -0.392 1.500 sum 1.338 -26.114 -0.768 26.160 Atomic orbital electron populations 1.70071 1.07637 1.27840 1.51841 1.25867 0.95704 1.03083 0.94944 0.85431 0.78709 0.78559 0.78228 1.20239 1.20947 1.18739 1.21475 0.93763 0.91002 1.49834 0.91601 1.19371 0.89978 0.88655 0.93719 1.62001 1.27105 1.03166 1.33955 1.22559 0.95675 0.89797 1.01372 1.22064 0.91013 0.99025 0.88133 1.47486 1.49329 1.06768 1.31447 1.15923 0.81314 0.80481 0.82241 1.91061 1.36640 1.83633 1.33236 1.42057 1.48307 1.06372 1.31053 1.26113 0.97868 0.94650 0.94738 1.71676 1.21424 1.15789 1.07741 1.71401 1.16127 0.94605 1.23476 1.31161 1.04100 1.03735 1.01038 1.20056 0.86895 0.77271 0.84495 1.93059 1.49634 1.92067 1.82646 1.93071 1.93993 1.69246 1.60554 1.84412 1.40752 0.97717 1.25180 1.21733 0.94438 0.79566 1.02061 1.22379 0.95396 0.99446 0.90111 0.92754 1.02352 0.96785 0.95994 0.88598 0.86876 0.88204 0.71446 0.78828 0.89338 0.89520 0.97068 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.42 13.29 21.45 0.28 -54.13 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.52 -28.10 8.41 25.60 0.22 -27.89 16 8 H 0.07 3.45 7.13 -2.91 -0.02 3.43 16 9 C 0.21 10.36 4.72 85.56 0.40 10.77 16 10 N -0.54 -20.62 4.62 -898.85 -4.15 -24.77 16 11 C 0.03 0.99 5.62 86.38 0.49 1.47 16 12 C 0.12 2.31 6.59 86.35 0.57 2.88 16 13 N -0.61 -15.84 3.00 -835.03 -2.51 -18.34 16 14 C 0.70 19.68 8.27 179.05 1.48 21.16 16 15 O -0.57 -21.62 14.52 -3.98 -0.06 -21.68 16 16 N -0.62 -12.10 5.32 -326.98 -1.74 -13.84 16 17 C 0.24 5.14 8.14 179.11 1.46 6.60 16 18 N -0.32 -9.72 9.75 -59.10 -0.58 -10.29 16 19 N -0.22 -5.79 11.58 -47.67 -0.55 -6.34 16 20 C -0.12 -1.97 7.36 88.45 0.65 -1.32 16 21 C 0.37 3.83 5.86 71.24 0.42 4.25 16 22 F -0.19 -3.23 17.27 44.97 0.78 -2.46 16 23 F -0.19 -1.97 17.14 44.97 0.77 -1.20 16 24 S 0.28 3.28 23.10 -56.49 -1.30 1.98 16 25 C 0.15 4.34 6.61 86.50 0.57 4.91 16 26 C 0.06 2.04 5.47 86.54 0.47 2.51 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 29 H 0.01 0.74 7.97 -2.39 -0.02 0.72 16 30 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 2.51 7.99 -2.38 -0.02 2.49 16 32 H 0.11 1.10 5.63 -2.39 -0.01 1.09 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.44 4.48 6.32 -92.71 -0.59 3.90 16 35 H 0.20 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.09 2.73 7.09 -2.39 -0.02 2.72 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 39 H 0.08 3.28 6.67 -2.39 -0.02 3.26 16 Total: -1.00 -80.00 348.90 0.70 -79.30 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 0.54 Total: 0.76 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 7.19 Total: 25.93 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -9.24 Total: -127.72 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.06 Total: -21.68 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 1.55 Total: -3.65 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.30 Total: 1.98 kcal Total: -80.00 0.70 -79.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602818939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.013 kcal (2) G-P(sol) polarization free energy of solvation -79.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds