Wall clock time and date at job start Wed Apr 1 2020 04:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35908 * 116.99847 * 2 1 4 4 C 1.38749 * 120.05360 * 359.96142 * 3 2 1 5 5 C 1.38119 * 119.94116 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05878 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.10951 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05382 * 359.95703 * 7 6 5 9 9 C 1.50708 * 120.02565 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47282 * 259.99955 * 9 8 7 11 11 S 1.65597 * 120.00124 * 164.99897 * 10 9 8 12 12 O 1.42098 * 106.40573 * 178.54044 * 11 10 9 13 13 O 1.42096 * 106.40324 * 311.46571 * 11 10 9 14 14 C 1.76210 * 107.21534 * 65.00365 * 11 10 9 15 15 C 1.38658 * 119.87051 * 269.72849 * 14 11 10 16 16 C 1.38614 * 120.49365 * 179.72524 * 15 14 11 17 17 C 1.37637 * 120.25347 * 0.54869 * 16 15 14 18 18 C 1.40700 * 119.74220 * 359.72772 * 17 16 15 19 19 C 1.41391 * 120.24715 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00403 * 204.37073 * 19 18 17 21 21 C 1.39946 * 120.00040 * 24.36878 * 19 18 17 22 22 N 1.30826 * 119.99691 * 17.86016 * 21 19 18 23 23 Si 1.86800 * 120.00215 * 197.86913 * 21 19 18 24 24 H 1.48500 * 109.47424 * 89.99721 * 23 21 19 25 25 H 1.48503 * 109.46990 * 209.99824 * 23 21 19 26 26 H 1.48505 * 109.47006 * 329.99313 * 23 21 19 27 27 C 1.37594 * 119.87602 * 89.99970 * 14 11 10 28 28 H 1.09006 * 109.47807 * 59.99517 * 1 2 3 29 29 H 1.09000 * 109.47520 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47018 * 299.99698 * 1 2 3 31 31 H 1.07996 * 120.03006 * 0.04217 * 4 3 2 32 32 H 1.08006 * 119.97611 * 180.30025 * 5 4 3 33 33 H 1.07994 * 119.94824 * 180.02562 * 6 5 4 34 34 H 1.07995 * 119.97219 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.47320 * 20.00378 * 9 8 7 36 36 H 1.09007 * 109.46864 * 140.00183 * 9 8 7 37 37 H 0.97006 * 119.99918 * 345.00480 * 10 9 8 38 38 H 1.07990 * 119.75441 * 359.97438 * 15 14 11 39 39 H 1.08010 * 119.87371 * 180.25445 * 16 15 14 40 40 H 1.07996 * 120.13171 * 179.70614 * 17 16 15 41 41 H 0.97006 * 120.00030 * 180.02562 * 22 21 19 42 42 H 1.08004 * 120.12743 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0008 5 6 1.9207 3.6047 -0.0003 6 6 3.3018 3.6759 0.0005 7 6 4.0559 2.5172 0.0003 8 6 3.4310 1.2849 0.0001 9 6 4.2537 0.0222 0.0004 10 7 4.3198 -0.5179 -1.3598 11 16 5.4434 -1.6741 -1.7379 12 8 5.2302 -2.0100 -3.1020 13 8 6.6876 -1.2030 -1.2387 14 6 5.0453 -3.1137 -0.8030 15 6 5.5948 -3.2924 0.4575 16 6 5.2860 -4.4172 1.2064 17 6 4.4377 -5.3757 0.7005 18 6 3.8787 -5.2077 -0.5797 19 6 3.0055 -6.1853 -1.1096 20 1 2.8881 -6.2820 -2.1788 21 6 2.2933 -7.0279 -0.2485 22 7 2.1514 -6.7065 1.0117 23 14 1.5456 -8.6115 -0.8984 24 1 2.5293 -9.7156 -0.7629 25 1 0.3242 -8.9383 -0.1195 26 1 1.1885 -8.4394 -2.3296 27 6 4.1948 -4.0589 -1.3288 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2127 2.3203 -0.0008 32 1 1.3339 4.5114 0.0040 33 1 3.7921 4.6381 0.0014 34 1 5.1343 2.5753 0.0005 35 1 5.2610 0.2449 0.3522 36 1 3.7922 -0.7120 0.6609 37 1 3.7054 -0.1982 -2.0389 38 1 6.2652 -2.5478 0.8604 39 1 5.7166 -4.5443 2.1888 40 1 4.2022 -6.2536 1.2838 41 1 1.6581 -7.2906 1.6087 42 1 3.7710 -3.9196 -2.3124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619472893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:04 Heat of formation + Delta-G solvation = -70.528343 kcal Electronic energy + Delta-G solvation = -27839.987313 eV Core-core repulsion = 23876.876125 eV Total energy + Delta-G solvation = -3963.111188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34546 -37.59823 -37.54023 -36.60569 -35.25729 -35.14967 -33.81353 -31.11317 -30.18074 -30.03850 -29.74007 -27.41866 -25.60638 -25.41585 -22.25591 -21.86392 -21.56953 -20.93250 -19.03899 -18.16889 -17.92043 -17.02732 -16.37113 -16.16036 -15.86869 -15.70715 -15.32430 -15.10326 -14.74962 -14.55819 -14.26521 -13.99015 -13.45477 -13.32499 -13.25193 -12.84000 -12.69439 -12.53957 -12.13000 -11.87044 -11.71880 -11.56178 -11.52859 -11.44488 -11.36237 -11.34687 -11.20657 -10.96077 -10.84952 -10.80239 -10.58670 -9.74669 -9.61564 -9.33234 -9.08075 -9.04826 -8.29041 -7.98717 -7.66492 -6.90133 -4.50330 0.94434 1.26343 1.33963 2.25082 2.66507 3.00804 3.05055 3.08801 3.23328 3.50090 3.82793 3.84553 4.29979 4.47699 4.55031 4.67886 4.84976 4.97459 5.08096 5.09222 5.18389 5.21707 5.43310 5.46486 5.50192 5.57487 5.66639 5.94945 6.05362 6.10407 6.21526 6.23029 6.31013 6.40247 6.64629 6.69820 6.80070 6.89595 7.06286 7.24966 7.30667 7.32807 7.43251 7.76830 7.84602 7.98161 8.43853 8.70168 8.75574 10.05317 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.003500 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.962710 B = 7998.453733 C = 9365.905778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.145 3.855 4 C -0.214 4.214 5 C -0.077 4.077 6 C -0.163 4.163 7 C -0.064 4.064 8 C -0.127 4.127 9 C 0.170 3.830 10 N -1.113 6.113 11 S 2.690 3.310 12 O -0.974 6.974 13 O -0.977 6.977 14 C -0.630 4.630 15 C -0.148 4.148 16 C -0.121 4.121 17 C -0.119 4.119 18 C 0.092 3.908 19 C -0.461 4.461 20 H 0.082 0.918 21 C 0.076 3.924 22 N -0.795 5.795 23 Si 0.911 3.089 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.120 4.120 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.413 0.587 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.282 0.718 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 15.510 1.487 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.098 3.902 4 C -0.233 4.233 5 C -0.096 4.096 6 C -0.182 4.182 7 C -0.083 4.083 8 C -0.130 4.130 9 C 0.045 3.955 10 N -0.871 5.871 11 S 2.786 3.214 12 O -0.964 6.964 13 O -0.967 6.967 14 C -0.722 4.722 15 C -0.170 4.170 16 C -0.140 4.140 17 C -0.139 4.139 18 C 0.088 3.912 19 C -0.490 4.490 20 H 0.100 0.900 21 C -0.142 4.142 22 N -0.420 5.420 23 Si 0.735 3.265 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.185 1.185 27 C -0.142 4.142 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.247 0.753 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.093 0.907 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.247 15.283 1.250 15.674 hybrid contribution -1.523 -0.865 0.138 1.757 sum -4.770 14.419 1.388 15.251 Atomic orbital electron populations 1.23108 0.78317 1.04532 1.00890 1.86240 1.21318 1.26011 1.87788 1.18973 0.91811 0.84654 0.94741 1.21241 1.00090 0.92340 1.09627 1.20946 0.94721 0.96875 0.97045 1.21035 0.93883 0.98360 1.04883 1.21020 1.00278 0.90853 0.96146 1.19259 0.90570 0.95618 1.07505 1.19943 0.99537 0.92536 0.83512 1.55540 1.55388 1.57773 1.18385 1.01599 0.72926 0.73489 0.73389 1.93532 1.85820 1.84097 1.32983 1.93501 1.40761 1.80701 1.81704 1.29730 1.13351 1.19159 1.09955 1.20084 1.03204 1.00072 0.93598 1.20802 0.99431 0.95478 0.98300 1.21624 0.96025 0.98761 0.97453 1.17674 0.90882 0.90826 0.91785 1.19621 1.21076 1.13516 0.94834 0.89956 1.25919 0.94910 0.98911 0.94493 1.69791 1.31637 1.35224 1.05333 0.86261 0.78679 0.81346 0.80200 1.19173 1.20266 1.18455 1.20767 0.99528 0.94084 0.99798 0.92748 0.87751 0.92799 0.85421 0.85958 0.85851 0.84912 0.89708 0.90112 0.75348 0.87595 0.88439 0.85805 0.90670 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.16 9.73 -19.45 -0.19 -4.35 16 3 C 0.14 1.84 6.66 -39.22 -0.26 1.58 16 4 C -0.21 -2.22 9.04 -39.44 -0.36 -2.58 16 5 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 6 C -0.16 -1.54 10.04 -39.56 -0.40 -1.93 16 7 C -0.06 -0.70 9.67 -39.61 -0.38 -1.08 16 8 C -0.13 -1.64 5.29 -104.47 -0.55 -2.19 16 9 C 0.17 2.47 6.01 -5.19 -0.03 2.44 16 10 N -1.11 -17.48 5.99 -11.65 -0.07 -17.55 16 11 S 2.69 51.87 5.74 -107.50 -0.62 51.25 16 12 O -0.97 -21.01 17.27 -57.17 -0.99 -22.00 16 13 O -0.98 -20.05 16.73 -57.17 -0.96 -21.01 16 14 C -0.63 -13.99 5.94 -39.66 -0.24 -14.22 16 15 C -0.15 -3.25 9.53 -39.29 -0.37 -3.62 16 16 C -0.12 -2.73 10.02 -39.66 -0.40 -3.13 16 17 C -0.12 -2.98 8.70 -38.87 -0.34 -3.32 16 18 C 0.09 2.39 5.58 -106.83 -0.60 1.80 16 19 C -0.46 -11.91 9.05 -37.74 -0.34 -12.25 16 20 H 0.08 2.06 7.91 -52.49 -0.41 1.64 16 21 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 22 N -0.79 -19.64 10.95 55.55 0.61 -19.03 16 23 Si 0.91 18.12 29.60 -169.99 -5.03 13.09 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 26 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 27 C -0.12 -2.94 9.26 -38.87 -0.36 -3.30 16 28 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 31 H 0.13 1.07 6.30 -52.49 -0.33 0.73 16 32 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 35 H 0.08 1.14 7.61 -51.93 -0.40 0.74 16 36 H 0.08 1.26 7.85 -51.93 -0.41 0.85 16 37 H 0.41 5.86 8.65 -34.47 -0.30 5.57 16 38 H 0.11 2.08 7.59 -52.49 -0.40 1.68 16 39 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 40 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 41 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 42 H 0.11 2.61 7.60 -52.48 -0.40 2.21 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -31.63 370.74 -10.78 -42.42 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.01 Total: 11.51 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: -4.12 Total: -39.92 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.54 Total: -36.58 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -2.13 Total: -47.36 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: 51.87 SS G_CDS: -0.62 Total: 51.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.63 -10.78 -42.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619472893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.111 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds