Wall clock time and date at job start Wed Apr 1 2020 04:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35908 * 116.99847 * 2 1 4 4 C 1.38749 * 120.05360 * 359.96142 * 3 2 1 5 5 C 1.38119 * 119.94116 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05878 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.10951 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05382 * 359.95703 * 7 6 5 9 9 C 1.50708 * 120.02565 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47282 * 259.99955 * 9 8 7 11 11 S 1.65597 * 120.00124 * 164.99897 * 10 9 8 12 12 O 1.42098 * 106.40573 * 178.54044 * 11 10 9 13 13 O 1.42096 * 106.40324 * 311.46571 * 11 10 9 14 14 C 1.76210 * 107.21534 * 65.00365 * 11 10 9 15 15 C 1.38658 * 119.87051 * 269.72849 * 14 11 10 16 16 C 1.38614 * 120.49365 * 179.72524 * 15 14 11 17 17 C 1.37637 * 120.25347 * 0.54869 * 16 15 14 18 18 C 1.40700 * 119.74220 * 359.72772 * 17 16 15 19 19 C 1.41391 * 120.24715 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00403 * 204.37073 * 19 18 17 21 21 C 1.39946 * 120.00040 * 24.36878 * 19 18 17 22 22 N 1.30826 * 119.99691 * 17.86016 * 21 19 18 23 23 Si 1.86800 * 120.00215 * 197.86913 * 21 19 18 24 24 H 1.48500 * 109.47424 * 89.99721 * 23 21 19 25 25 H 1.48503 * 109.46990 * 209.99824 * 23 21 19 26 26 H 1.48505 * 109.47006 * 329.99313 * 23 21 19 27 27 C 1.37594 * 119.87602 * 89.99970 * 14 11 10 28 28 H 1.09006 * 109.47807 * 59.99517 * 1 2 3 29 29 H 1.09000 * 109.47520 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47018 * 299.99698 * 1 2 3 31 31 H 1.07996 * 120.03006 * 0.04217 * 4 3 2 32 32 H 1.08006 * 119.97611 * 180.30025 * 5 4 3 33 33 H 1.07994 * 119.94824 * 180.02562 * 6 5 4 34 34 H 1.07995 * 119.97219 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.47320 * 20.00378 * 9 8 7 36 36 H 1.09007 * 109.46864 * 140.00183 * 9 8 7 37 37 H 0.97006 * 119.99918 * 345.00480 * 10 9 8 38 38 H 1.07990 * 119.75441 * 359.97438 * 15 14 11 39 39 H 1.08010 * 119.87371 * 180.25445 * 16 15 14 40 40 H 1.07996 * 120.13171 * 179.70614 * 17 16 15 41 41 H 0.97006 * 120.00030 * 180.02562 * 22 21 19 42 42 H 1.08004 * 120.12743 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0008 5 6 1.9207 3.6047 -0.0003 6 6 3.3018 3.6759 0.0005 7 6 4.0559 2.5172 0.0003 8 6 3.4310 1.2849 0.0001 9 6 4.2537 0.0222 0.0004 10 7 4.3198 -0.5179 -1.3598 11 16 5.4434 -1.6741 -1.7379 12 8 5.2302 -2.0100 -3.1020 13 8 6.6876 -1.2030 -1.2387 14 6 5.0453 -3.1137 -0.8030 15 6 5.5948 -3.2924 0.4575 16 6 5.2860 -4.4172 1.2064 17 6 4.4377 -5.3757 0.7005 18 6 3.8787 -5.2077 -0.5797 19 6 3.0055 -6.1853 -1.1096 20 1 2.8881 -6.2820 -2.1788 21 6 2.2933 -7.0279 -0.2485 22 7 2.1514 -6.7065 1.0117 23 14 1.5456 -8.6115 -0.8984 24 1 2.5293 -9.7156 -0.7629 25 1 0.3242 -8.9383 -0.1195 26 1 1.1885 -8.4394 -2.3296 27 6 4.1948 -4.0589 -1.3288 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2127 2.3203 -0.0008 32 1 1.3339 4.5114 0.0040 33 1 3.7921 4.6381 0.0014 34 1 5.1343 2.5753 0.0005 35 1 5.2610 0.2449 0.3522 36 1 3.7922 -0.7120 0.6609 37 1 3.7054 -0.1982 -2.0389 38 1 6.2652 -2.5478 0.8604 39 1 5.7166 -4.5443 2.1888 40 1 4.2022 -6.2536 1.2838 41 1 1.6581 -7.2906 1.6087 42 1 3.7710 -3.9196 -2.3124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619472893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:03 Heat of formation + Delta-G solvation = -90.825675 kcal Electronic energy + Delta-G solvation = -27840.867471 eV Core-core repulsion = 23876.876125 eV Total energy + Delta-G solvation = -3963.991346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.19497 -39.43549 -38.43719 -38.23190 -36.91176 -36.32491 -35.66074 -32.06308 -31.90693 -31.57249 -30.97944 -28.22772 -27.34860 -26.60323 -23.66344 -23.05472 -22.81457 -22.43258 -20.62248 -19.63479 -19.06510 -18.46501 -17.74827 -17.44183 -17.21189 -16.82073 -16.59214 -16.54238 -16.33361 -15.73295 -15.33029 -15.20035 -15.05648 -14.91473 -14.30508 -14.25798 -13.92654 -13.67490 -13.51034 -13.31083 -13.17903 -13.12253 -13.08140 -13.03937 -12.80170 -12.75341 -12.59521 -12.36780 -12.21066 -11.98738 -11.66817 -11.54782 -11.35918 -11.14626 -10.45123 -9.90502 -9.81519 -9.55241 -9.12212 -8.72772 -6.44680 -0.51449 0.34724 0.42960 0.51205 0.85184 1.36760 1.46314 1.49776 2.16124 2.17562 2.42086 2.55621 2.77153 2.87668 3.45373 3.53451 3.71928 3.88236 4.07000 4.27055 4.30425 4.37851 4.38387 4.39488 4.45711 4.51354 4.64768 4.73679 4.79867 4.84523 4.89638 4.91297 5.07213 5.09344 5.20883 5.40255 5.42228 5.51661 5.57654 5.60828 5.89340 5.89741 5.94303 6.05784 6.11585 6.48742 6.53066 6.80039 6.85474 8.25193 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.003500 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.962710 B = 7998.453733 C = 9365.905778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.124 3.876 4 C -0.217 4.217 5 C -0.073 4.073 6 C -0.161 4.161 7 C -0.070 4.070 8 C -0.149 4.149 9 C 0.167 3.833 10 N -1.099 6.099 11 S 2.721 3.279 12 O -0.997 6.997 13 O -0.983 6.983 14 C -0.637 4.637 15 C -0.148 4.148 16 C -0.122 4.122 17 C -0.141 4.141 18 C 0.064 3.936 19 C -0.499 4.499 20 H 0.077 0.923 21 C 0.039 3.961 22 N -0.820 5.820 23 Si 0.983 3.017 24 H -0.262 1.262 25 H -0.264 1.264 26 H -0.260 1.260 27 C -0.144 4.144 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.292 0.708 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 17.572 1.891 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.078 3.922 4 C -0.236 4.236 5 C -0.091 4.091 6 C -0.179 4.179 7 C -0.089 4.089 8 C -0.151 4.151 9 C 0.042 3.958 10 N -0.860 5.860 11 S 2.814 3.186 12 O -0.987 6.987 13 O -0.973 6.973 14 C -0.726 4.726 15 C -0.169 4.169 16 C -0.141 4.141 17 C -0.161 4.161 18 C 0.061 3.939 19 C -0.528 4.528 20 H 0.095 0.905 21 C -0.177 4.177 22 N -0.446 5.446 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.189 1.189 26 H -0.184 1.184 27 C -0.165 4.165 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.257 0.743 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.663 17.332 1.672 17.793 hybrid contribution -1.385 -1.301 0.066 1.902 sum -5.049 16.030 1.738 16.896 Atomic orbital electron populations 1.23272 0.76920 1.04729 1.02508 1.86180 1.23077 1.27300 1.88272 1.19219 0.92075 0.85059 0.95887 1.21509 1.01047 0.92013 1.09013 1.21368 0.95048 0.97495 0.95226 1.21399 0.94138 0.98945 1.03429 1.21246 1.01176 0.90616 0.95827 1.19229 0.90693 0.95397 1.09803 1.20034 1.00470 0.93221 0.82041 1.55256 1.54961 1.56246 1.19505 1.00734 0.72951 0.72764 0.72194 1.93494 1.86296 1.84585 1.34330 1.93486 1.41593 1.80467 1.81717 1.30225 1.11948 1.20061 1.10337 1.20479 1.02842 1.00203 0.93335 1.21148 0.98501 0.94917 0.99575 1.21637 0.97491 0.99490 0.97464 1.18025 0.91577 0.91643 0.92702 1.19849 1.22655 1.15332 0.95012 0.90511 1.26723 0.94820 1.01582 0.94541 1.69821 1.31979 1.36437 1.06360 0.85187 0.78162 0.76800 0.79507 1.18636 1.18864 1.18402 1.20827 1.01053 0.94671 0.99976 0.91107 0.88379 0.91129 0.83638 0.82894 0.83116 0.83691 0.88605 0.91859 0.74348 0.84890 0.85466 0.86852 0.89746 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.33 -9.36 9.73 -92.52 -0.90 -10.26 16 3 C 0.12 3.05 6.66 22.50 0.15 3.20 16 4 C -0.22 -4.03 9.04 22.36 0.20 -3.82 16 5 C -0.07 -1.09 10.04 22.25 0.22 -0.87 16 6 C -0.16 -2.49 10.04 22.28 0.22 -2.27 16 7 C -0.07 -1.37 9.67 22.25 0.22 -1.16 16 8 C -0.15 -3.69 5.29 -19.77 -0.10 -3.79 16 9 C 0.17 4.79 6.01 85.64 0.51 5.31 16 10 N -1.10 -34.27 5.99 -190.78 -1.14 -35.41 16 11 S 2.72 104.44 5.74 -56.49 -0.32 104.11 16 12 O -1.00 -43.30 17.27 -128.00 -2.21 -45.51 16 13 O -0.98 -39.16 16.73 -128.00 -2.14 -41.30 16 14 C -0.64 -28.68 5.94 22.22 0.13 -28.55 16 15 C -0.15 -6.42 9.53 22.46 0.21 -6.21 16 16 C -0.12 -5.55 10.02 22.22 0.22 -5.32 16 17 C -0.14 -7.30 8.70 22.73 0.20 -7.10 16 18 C 0.06 3.47 5.58 -21.29 -0.12 3.35 16 19 C -0.50 -26.96 9.05 23.46 0.21 -26.75 16 20 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 21 C 0.04 1.93 5.14 85.26 0.44 2.37 16 22 N -0.82 -41.47 10.95 21.83 0.24 -41.24 16 23 Si 0.98 37.54 29.60 68.60 2.03 39.57 16 24 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 26 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 27 C -0.14 -7.34 9.26 22.73 0.21 -7.12 16 28 H 0.07 1.11 7.66 -2.38 -0.02 1.09 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 1.10 7.66 -2.38 -0.02 1.08 16 31 H 0.15 2.06 6.30 -2.91 -0.02 2.04 16 32 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.15 2.37 8.04 -2.91 -0.02 2.35 16 35 H 0.10 2.48 7.61 -2.39 -0.02 2.46 16 36 H 0.06 2.02 7.85 -2.38 -0.02 2.00 16 37 H 0.42 11.92 8.65 -96.74 -0.84 11.08 16 38 H 0.13 4.99 7.59 -2.92 -0.02 4.97 16 39 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 40 H 0.11 6.00 6.16 -2.91 -0.02 5.98 16 41 H 0.29 13.21 8.30 -92.70 -0.77 12.44 16 42 H 0.11 5.33 7.60 -2.91 -0.02 5.31 16 Total: -1.00 -69.54 370.74 -0.18 -69.72 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: 0.23 Total: 37.53 kcal Atomic # 6 Polarization: -81.27 SS G_CDS: 4.05 Total: -77.23 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -0.90 Total: -76.64 kcal Atomic # 8 Polarization: -91.81 SS G_CDS: -5.25 Total: -97.06 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Atomic # 16 Polarization: 104.44 SS G_CDS: -0.32 Total: 104.11 kcal Total: -69.54 -0.18 -69.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619472893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.105 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds