Wall clock time and date at job start Wed Apr 1 2020 04:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00105 * 2 1 4 4 C 1.50708 * 109.47058 * 275.00098 * 3 2 1 5 5 C 1.38279 * 119.96745 * 269.72772 * 4 3 2 6 6 C 1.38253 * 120.11064 * 179.72683 * 5 4 3 7 7 C 1.38168 * 120.04961 * 0.54249 * 6 5 4 8 8 C 1.38708 * 119.94607 * 359.72449 * 7 6 5 9 9 O 1.35903 * 120.05397 * 179.97438 * 8 7 6 10 10 C 1.38117 * 119.97223 * 89.99612 * 4 3 2 11 11 S 1.65603 * 120.00117 * 179.97438 * 2 1 3 12 12 O 1.42097 * 106.40351 * 23.54315 * 11 2 1 13 13 O 1.42101 * 106.40313 * 156.46247 * 11 2 1 14 14 C 1.76204 * 107.21956 * 269.99963 * 11 2 1 15 15 C 1.38658 * 119.87409 * 269.72824 * 14 11 2 16 16 C 1.38619 * 120.49517 * 179.72317 * 15 14 11 17 17 C 1.37635 * 120.24994 * 0.54561 * 16 15 14 18 18 C 1.40701 * 119.74670 * 359.73302 * 17 16 15 19 19 C 1.41390 * 120.24785 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00336 * 150.22083 * 19 18 17 21 21 C 1.39948 * 119.99598 * 330.21735 * 19 18 17 22 22 N 1.30828 * 119.99938 * 161.72821 * 21 19 18 23 23 Si 1.86795 * 120.00315 * 341.72508 * 21 19 18 24 24 H 1.48506 * 109.47222 * 95.41082 * 23 21 19 25 25 H 1.48500 * 109.47453 * 215.41070 * 23 21 19 26 26 H 1.48501 * 109.47143 * 335.41550 * 23 21 19 27 27 C 1.37601 * 119.87479 * 90.00171 * 14 11 2 28 28 H 1.08995 * 109.47022 * 90.00457 * 1 2 3 29 29 H 1.09004 * 109.47194 * 210.00029 * 1 2 3 30 30 H 1.08998 * 109.47434 * 329.99735 * 1 2 3 31 31 H 1.08997 * 109.47292 * 155.00146 * 3 2 1 32 32 H 1.09003 * 109.47312 * 34.99652 * 3 2 1 33 33 H 1.08000 * 119.95217 * 359.97176 * 5 4 3 34 34 H 1.08002 * 119.97636 * 180.25327 * 6 5 4 35 35 H 1.08003 * 120.02431 * 179.75561 * 7 6 5 36 36 H 0.96699 * 114.00202 * 270.02221 * 9 8 7 37 37 H 1.08002 * 120.02884 * 359.97438 * 10 4 3 38 38 H 1.07994 * 119.75112 * 0.02562 * 15 14 11 39 39 H 1.08000 * 119.87045 * 180.25813 * 16 15 14 40 40 H 1.07998 * 120.12787 * 179.74700 * 17 16 15 41 41 H 0.96999 * 120.00397 * 180.02562 * 22 21 19 42 42 H 1.07996 * 120.12444 * 359.97178 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4155 5 6 3.4437 1.4013 -2.1668 6 6 3.5759 1.8509 -3.4674 7 6 2.6119 2.6749 -4.0160 8 6 1.5081 3.0462 -3.2626 9 8 0.5589 3.8570 -3.7998 10 6 1.3750 2.5891 -1.9593 11 16 2.2930 -1.4341 0.0006 12 8 1.4114 -2.4068 -0.5434 13 8 3.5760 -1.1570 -0.5439 14 6 2.5539 -1.8851 1.6839 15 6 3.7000 -1.4654 2.3417 16 6 3.9155 -1.8079 3.6675 17 6 2.9970 -2.5793 4.3425 18 6 1.8331 -3.0157 3.6833 19 6 0.8822 -3.8081 4.3667 20 1 -0.1618 -3.7525 4.0959 21 6 1.2939 -4.6645 5.3941 22 7 0.4207 -5.1201 6.2553 23 14 3.0901 -5.1572 5.5360 24 1 3.7746 -4.2607 6.5019 25 1 3.1823 -6.5607 6.0123 26 1 3.7415 -5.0418 4.2064 27 6 1.6220 -2.6572 2.3389 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 3.1857 1.1177 0.4343 32 1 1.6501 2.0043 0.5894 33 1 4.2006 0.7612 -1.7382 34 1 4.4356 1.5617 -4.0536 35 1 2.7176 3.0290 -5.0308 36 1 0.7231 4.7999 -3.6619 37 1 0.5163 2.8766 -1.3707 38 1 4.4280 -0.8631 1.8187 39 1 4.8099 -1.4721 4.1713 40 1 3.1689 -2.8484 5.3742 41 1 0.7060 -5.7134 6.9676 42 1 0.7319 -2.9863 1.8234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619485466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:42 Heat of formation + Delta-G solvation = -90.073273 kcal Electronic energy + Delta-G solvation = -27809.808133 eV Core-core repulsion = 23845.849413 eV Total energy + Delta-G solvation = -3963.958719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.71928 -39.69365 -38.43059 -38.13548 -36.92282 -36.69720 -35.64865 -32.55640 -32.44111 -31.89378 -30.74237 -28.31877 -27.24405 -25.76916 -24.07023 -23.48851 -22.71098 -22.45638 -20.42608 -19.55600 -18.92182 -18.56068 -18.08986 -17.36877 -17.21571 -17.03249 -16.61506 -16.51805 -16.13293 -15.89912 -15.43469 -15.20668 -14.83269 -14.69366 -14.59922 -14.15332 -13.98213 -13.81811 -13.59962 -13.45740 -13.38117 -13.13482 -13.13006 -13.03614 -12.89978 -12.62417 -12.54688 -12.49401 -12.17403 -12.03590 -11.79907 -11.57514 -11.46154 -11.07576 -10.16890 -9.99840 -9.82577 -9.70102 -9.52670 -8.98118 -6.60817 -0.64500 0.16655 0.30950 0.39388 0.63696 1.19628 1.34932 1.41884 1.98430 2.05295 2.41869 2.67105 2.79902 3.27166 3.29494 3.36079 3.75450 3.85721 4.05141 4.15966 4.26103 4.31621 4.39980 4.42493 4.46632 4.62448 4.64287 4.73618 4.74730 4.81765 4.89288 4.94539 5.03249 5.05682 5.10615 5.31053 5.42159 5.45522 5.50893 5.57068 5.61640 5.68875 5.75009 5.94179 5.98153 6.23016 6.56825 6.68328 6.90702 8.10079 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.025500 B = 0.002777 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.779352 B =10078.733731 C =10460.388089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.989 5.989 3 C 0.156 3.844 4 C -0.102 4.102 5 C -0.130 4.130 6 C -0.114 4.114 7 C -0.149 4.149 8 C 0.091 3.909 9 O -0.510 6.510 10 C -0.132 4.132 11 S 2.705 3.295 12 O -0.995 6.995 13 O -0.967 6.967 14 C -0.633 4.633 15 C -0.140 4.140 16 C -0.095 4.095 17 C -0.205 4.205 18 C 0.055 3.945 19 C -0.483 4.483 20 H 0.062 0.938 21 C 0.049 3.951 22 N -0.841 5.841 23 Si 0.955 3.045 24 H -0.246 1.246 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.126 4.126 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.409 0.591 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.109 0.891 41 H 0.296 0.704 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 18.326 -12.759 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.828 5.828 3 C 0.032 3.968 4 C -0.104 4.104 5 C -0.149 4.149 6 C -0.132 4.132 7 C -0.168 4.168 8 C 0.047 3.953 9 O -0.323 6.323 10 C -0.151 4.151 11 S 2.798 3.202 12 O -0.985 6.985 13 O -0.957 6.957 14 C -0.721 4.721 15 C -0.161 4.161 16 C -0.114 4.114 17 C -0.225 4.225 18 C 0.052 3.948 19 C -0.513 4.513 20 H 0.080 0.920 21 C -0.167 4.167 22 N -0.466 5.466 23 Si 0.777 3.223 24 H -0.171 1.171 25 H -0.200 1.200 26 H -0.181 1.181 27 C -0.147 4.147 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.268 0.732 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.494 17.188 -13.424 22.490 hybrid contribution 0.136 -0.351 1.252 1.307 sum 5.630 16.837 -12.172 21.525 Atomic orbital electron populations 1.21713 0.77014 1.04487 1.02760 1.57305 1.15919 1.20184 1.89368 1.20504 0.98328 0.84933 0.93001 1.20242 0.94845 0.97866 0.97449 1.21618 0.98722 0.99427 0.95127 1.21326 0.99637 0.97029 0.95164 1.21693 0.93567 1.00237 1.01261 1.18577 0.89082 0.96120 0.91510 1.84791 1.46635 1.22062 1.78782 1.21481 0.99406 0.99308 0.94862 1.01396 0.72667 0.72450 0.73711 1.93503 1.67027 1.60273 1.77724 1.93473 1.40647 1.84596 1.77023 1.30531 1.04170 1.12349 1.25082 1.20633 0.96327 1.03897 0.95233 1.21190 0.98609 0.96852 0.94726 1.21519 0.97930 1.03461 0.99579 1.17940 0.92724 0.92384 0.91789 1.19484 0.95528 1.21685 1.14570 0.91988 1.26793 1.03773 0.93971 0.92116 1.69699 1.39043 1.26381 1.11499 0.85644 0.77997 0.77964 0.80650 1.17089 1.20036 1.18053 1.20869 0.98962 1.00798 0.94029 0.91999 0.91958 0.87607 0.88282 0.86158 0.84889 0.83866 0.83909 0.73160 0.83829 0.83564 0.83698 0.87291 0.89299 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.94 10.33 127.77 1.32 3.26 16 2 N -0.99 -25.72 3.17 -543.22 -1.72 -27.44 16 3 C 0.16 3.16 5.49 85.64 0.47 3.63 16 4 C -0.10 -2.16 5.46 -19.88 -0.11 -2.26 16 5 C -0.13 -2.97 9.27 22.28 0.21 -2.77 16 6 C -0.11 -2.22 10.04 22.26 0.22 -1.99 16 7 C -0.15 -2.68 9.99 22.37 0.22 -2.45 16 8 C 0.09 1.69 6.70 22.51 0.15 1.84 16 9 O -0.51 -7.90 13.50 -92.46 -1.25 -9.15 16 10 C -0.13 -2.45 9.64 22.36 0.22 -2.24 16 11 S 2.70 93.61 5.60 -56.49 -0.32 93.29 16 12 O -0.99 -41.20 16.34 -128.00 -2.09 -43.29 16 13 O -0.97 -33.40 14.38 -128.00 -1.84 -35.24 16 14 C -0.63 -25.07 5.97 22.22 0.13 -24.93 16 15 C -0.14 -5.10 9.53 22.46 0.21 -4.88 16 16 C -0.10 -3.56 10.02 22.22 0.22 -3.34 16 17 C -0.21 -9.18 7.18 22.73 0.16 -9.01 16 18 C 0.06 2.75 5.10 -21.29 -0.11 2.64 16 19 C -0.48 -26.60 9.57 23.46 0.22 -26.38 16 20 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 21 C 0.05 2.57 5.40 85.26 0.46 3.03 16 22 N -0.84 -44.93 13.93 21.83 0.30 -44.62 16 23 Si 0.95 41.12 24.52 68.60 1.68 42.81 16 24 H -0.25 -9.65 6.71 99.48 0.67 -8.98 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.26 -11.48 6.86 99.48 0.68 -10.79 16 27 C -0.13 -5.83 9.26 22.73 0.21 -5.62 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.62 7.79 -2.38 -0.02 1.60 16 30 H 0.11 1.68 7.94 -2.39 -0.02 1.66 16 31 H 0.10 1.91 7.55 -2.39 -0.02 1.90 16 32 H 0.12 1.68 7.91 -2.39 -0.02 1.66 16 33 H 0.13 3.29 6.63 -2.91 -0.02 3.27 16 34 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.41 2.10 9.06 -74.06 -0.67 1.43 16 37 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.15 4.31 7.59 -2.91 -0.02 4.29 16 39 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.11 4.75 4.73 -2.91 -0.01 4.74 16 41 H 0.30 14.15 8.30 -92.71 -0.77 13.38 16 42 H 0.11 5.14 7.60 -2.91 -0.02 5.12 16 Total: -1.00 -70.24 364.60 -0.68 -70.92 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.33 Total: 24.19 kcal Atomic # 6 Polarization: -75.70 SS G_CDS: 4.22 Total: -71.48 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -1.42 Total: -72.06 kcal Atomic # 8 Polarization: -82.49 SS G_CDS: -5.18 Total: -87.67 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.68 Total: 42.81 kcal Atomic # 16 Polarization: 93.61 SS G_CDS: -0.32 Total: 93.29 kcal Total: -70.24 -0.68 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.151 kcal (2) G-P(sol) polarization free energy of solvation -70.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds