Wall clock time and date at job start Wed Apr 1 2020 04:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 117.00289 * 2 1 4 4 C 1.38756 * 120.05047 * 0.03353 * 3 2 1 5 5 C 1.38121 * 119.93930 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05744 * 359.73875 * 5 4 3 7 7 C 1.38240 * 120.11358 * 0.51296 * 6 5 4 8 8 C 1.50693 * 119.97735 * 179.76771 * 7 6 5 9 9 N 1.46508 * 109.47055 * 269.72143 * 8 7 6 10 10 S 1.65605 * 119.99948 * 162.40741 * 9 8 7 11 11 O 1.42097 * 106.40118 * 310.76628 * 10 9 8 12 12 O 1.42097 * 106.39940 * 177.84423 * 10 9 8 13 13 C 1.76195 * 107.21492 * 64.30614 * 10 9 8 14 14 C 1.37647 * 120.12702 * 112.88317 * 13 10 9 15 15 C 1.38613 * 120.24386 * 180.32098 * 14 13 10 16 16 C 1.38652 * 120.50479 * 359.66678 * 15 14 13 17 17 C 1.37593 * 120.24992 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.13233 * 292.57371 * 13 10 9 19 19 C 1.41401 * 120.23960 * 359.97438 * 18 13 10 20 20 H 1.07994 * 119.99901 * 317.26570 * 19 18 13 21 21 C 1.39946 * 119.99807 * 137.26868 * 19 18 13 22 22 N 1.30817 * 119.99928 * 152.68042 * 21 19 18 23 23 Si 1.86802 * 120.00002 * 332.67916 * 21 19 18 24 24 H 1.48503 * 109.47263 * 268.47766 * 23 21 19 25 25 H 1.48497 * 109.47292 * 28.47621 * 23 21 19 26 26 H 1.48496 * 109.47220 * 148.47590 * 23 21 19 27 27 C 1.38172 * 120.05124 * 359.48970 * 7 6 5 28 28 H 1.08997 * 109.47537 * 59.99085 * 1 2 3 29 29 H 1.09002 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46760 * 299.99820 * 1 2 3 31 31 H 1.07999 * 120.03042 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96957 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.94521 * 180.27813 * 6 5 4 34 34 H 1.08997 * 109.47415 * 149.72418 * 8 7 6 35 35 H 1.09004 * 109.47458 * 29.72030 * 8 7 6 36 36 H 0.96997 * 119.99751 * 342.41642 * 9 8 7 37 37 H 1.07997 * 119.87797 * 0.02562 * 14 13 10 38 38 H 1.08002 * 119.74409 * 179.69540 * 15 14 13 39 39 H 1.08007 * 119.87647 * 180.02562 * 16 15 14 40 40 H 1.08001 * 120.12941 * 180.02562 * 17 16 15 41 41 H 0.97000 * 120.00388 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.02766 * 180.23491 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0007 5 6 1.9209 3.6047 0.0012 6 6 3.3019 3.6757 0.0065 7 6 4.0560 2.5171 0.0006 8 6 5.5608 2.5981 0.0011 9 7 6.0488 2.6248 -1.3800 10 16 7.5883 3.1419 -1.7044 11 8 7.7500 4.3758 -1.0185 12 8 7.7714 3.0022 -3.1066 13 6 8.6932 2.0005 -0.9422 14 6 9.4964 1.1944 -1.7166 15 6 10.3617 0.2909 -1.1196 16 6 10.4339 0.1928 0.2615 17 6 9.6449 0.9931 1.0554 18 6 8.7626 1.9140 0.4604 19 6 7.9474 2.7420 1.2662 20 1 7.8206 3.7844 1.0142 21 6 7.3050 2.2106 2.3902 22 7 7.0138 2.9844 3.4039 23 14 6.8635 0.3963 2.4430 24 1 5.4884 0.2059 1.9154 25 1 7.8238 -0.3714 1.6102 26 1 6.9271 -0.0881 3.8453 27 6 3.4311 1.2848 0.0000 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2128 2.3204 0.0008 32 1 1.3340 4.5113 0.0022 33 1 3.7923 4.6380 0.0115 34 1 5.9713 1.7288 0.5147 35 1 5.8757 3.5062 0.5153 36 1 5.4702 2.3397 -2.1044 37 1 9.4489 1.2628 -2.7934 38 1 10.9848 -0.3411 -1.7351 39 1 11.1121 -0.5144 0.7160 40 1 9.7030 0.9154 2.1311 41 1 6.5682 2.6163 4.1829 42 1 4.0206 0.3799 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:10 Heat of formation + Delta-G solvation = -61.778584 kcal Electronic energy + Delta-G solvation = -28815.380872 eV Core-core repulsion = 24852.649102 eV Total energy + Delta-G solvation = -3962.731770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.09505 -37.98009 -37.66746 -36.34678 -34.93421 -34.74905 -33.69886 -30.94133 -30.68796 -30.06920 -30.03638 -27.39221 -25.77620 -24.87128 -22.44695 -21.99845 -21.23975 -20.90191 -18.60630 -17.95461 -17.76536 -16.95037 -16.33314 -16.19120 -15.85712 -15.80161 -15.61639 -15.16899 -14.49468 -14.39844 -14.09116 -13.66981 -13.50731 -13.31055 -13.17252 -12.98358 -12.57711 -12.42808 -12.20757 -12.09706 -11.83007 -11.62534 -11.34706 -11.22474 -11.18367 -11.13788 -11.05134 -10.96285 -10.70448 -10.55549 -10.28213 -10.10425 -9.49845 -9.33429 -8.78470 -8.71294 -8.23153 -8.12323 -7.68840 -7.20537 -4.82884 1.23272 1.53940 1.63126 2.06953 2.50339 2.90914 3.02342 3.09427 3.23164 3.75478 3.78104 4.10507 4.20762 4.61298 4.78163 4.87648 4.98891 5.01669 5.02911 5.18757 5.29590 5.43038 5.49235 5.54640 5.67938 5.83237 5.94284 5.95315 6.17185 6.20785 6.24869 6.34230 6.47751 6.52449 6.63902 6.65631 6.82180 6.89683 6.95031 7.08634 7.23429 7.41684 7.44996 7.57786 7.64303 7.82828 8.20906 8.34027 8.54605 9.77053 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.004641 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.807582 B = 6032.156187 C = 6788.894132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.119 3.881 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.135 4.135 7 C -0.051 4.051 8 C 0.163 3.837 9 N -1.116 6.116 10 S 2.708 3.292 11 O -0.966 6.966 12 O -0.996 6.996 13 C -0.762 4.762 14 C 0.006 3.994 15 C -0.246 4.246 16 C -0.059 4.059 17 C -0.198 4.198 18 C 0.166 3.834 19 C -0.498 4.498 20 H 0.135 0.865 21 C 0.103 3.897 22 N -0.768 5.768 23 Si 0.850 3.150 24 H -0.252 1.252 25 H -0.224 1.224 26 H -0.274 1.274 27 C -0.137 4.137 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.407 0.593 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.290 0.710 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.560 -4.216 -2.766 12.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.074 3.926 4 C -0.229 4.229 5 C -0.103 4.103 6 C -0.154 4.154 7 C -0.052 4.052 8 C 0.039 3.961 9 N -0.872 5.872 10 S 2.804 3.196 11 O -0.956 6.956 12 O -0.987 6.987 13 C -0.856 4.856 14 C -0.013 4.013 15 C -0.266 4.266 16 C -0.078 4.078 17 C -0.217 4.217 18 C 0.161 3.839 19 C -0.525 4.525 20 H 0.152 0.848 21 C -0.121 4.121 22 N -0.389 5.389 23 Si 0.671 3.329 24 H -0.177 1.177 25 H -0.146 1.146 26 H -0.199 1.199 27 C -0.157 4.157 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.240 0.760 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.264 -3.466 -2.831 12.120 hybrid contribution -0.546 -1.527 0.518 1.702 sum -11.810 -4.992 -2.313 13.029 Atomic orbital electron populations 1.23009 0.78795 1.03643 1.01186 1.86076 1.21049 1.27163 1.88999 1.18979 0.92212 0.84035 0.97369 1.21173 0.99636 0.92491 1.09599 1.20911 0.94569 0.96823 0.98027 1.21134 0.93539 0.98613 1.02135 1.20065 0.96420 0.92121 0.96639 1.20878 0.87753 1.05387 0.82125 1.55560 1.32258 1.85596 1.13780 1.00893 0.72370 0.74351 0.71955 1.93506 1.85207 1.41855 1.74988 1.93464 1.85879 1.87863 1.31477 1.30114 1.24439 1.26724 1.04346 1.20398 0.91862 0.91165 0.97910 1.20571 1.06393 1.05140 0.94463 1.20907 0.96697 0.96138 0.94046 1.21380 0.99948 1.02120 0.98281 1.17098 0.88946 0.88598 0.89228 1.20226 1.25466 1.00391 1.06438 0.84751 1.26064 0.93466 0.99868 0.92745 1.69779 1.26716 1.39258 1.03173 0.87158 0.81790 0.83998 0.79915 1.17708 1.14595 1.19899 1.20450 0.91230 0.98657 1.05316 0.92801 0.88486 0.92806 0.85813 0.85807 0.85228 0.90297 0.87213 0.76030 0.86814 0.88104 0.88290 0.87743 0.89930 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.30 10.50 -19.44 -0.20 -4.51 16 3 C 0.12 1.73 6.69 -39.22 -0.26 1.47 16 4 C -0.21 -2.64 9.04 -39.43 -0.36 -2.99 16 5 C -0.09 -1.08 10.04 -39.61 -0.40 -1.48 16 6 C -0.14 -2.03 9.70 -39.56 -0.38 -2.42 16 7 C -0.05 -0.85 5.28 -104.65 -0.55 -1.41 16 8 C 0.16 3.11 4.18 -5.19 -0.02 3.09 16 9 N -1.12 -20.33 5.98 -11.65 -0.07 -20.40 16 10 S 2.71 57.52 5.44 -107.50 -0.58 56.94 16 11 O -0.97 -23.08 15.08 -57.17 -0.86 -23.94 16 12 O -1.00 -21.88 16.97 -57.17 -0.97 -22.85 16 13 C -0.76 -17.21 5.94 -38.87 -0.23 -17.44 16 14 C 0.01 0.14 9.54 -39.66 -0.38 -0.24 16 15 C -0.25 -4.92 10.05 -39.29 -0.39 -5.31 16 16 C -0.06 -1.20 10.02 -39.66 -0.40 -1.60 16 17 C -0.20 -4.43 6.92 -38.88 -0.27 -4.70 16 18 C 0.17 3.92 4.59 -106.82 -0.49 3.43 16 19 C -0.50 -12.07 5.14 -37.74 -0.19 -12.27 16 20 H 0.14 3.55 5.38 -52.49 -0.28 3.26 16 21 C 0.10 2.37 4.23 -17.34 -0.07 2.30 16 22 N -0.77 -18.14 13.93 55.55 0.77 -17.37 16 23 Si 0.85 17.48 24.37 -169.99 -4.14 13.34 16 24 H -0.25 -4.94 6.95 56.52 0.39 -4.55 16 25 H -0.22 -4.69 5.63 56.52 0.32 -4.37 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 27 C -0.14 -2.24 9.64 -39.43 -0.38 -2.62 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 34 H 0.08 1.59 3.17 -51.93 -0.16 1.42 16 35 H 0.11 2.27 5.88 -51.93 -0.31 1.97 16 36 H 0.41 6.31 8.66 -34.48 -0.30 6.01 16 37 H 0.11 2.21 7.32 -52.49 -0.38 1.82 16 38 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 40 H 0.10 2.26 7.03 -52.49 -0.37 1.89 16 41 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 42 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -29.38 348.56 -9.29 -38.67 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -4.69 Total: 15.82 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: -3.79 Total: -40.95 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.70 Total: -37.77 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -2.04 Total: -51.30 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -4.14 Total: 13.34 kcal Atomic # 16 Polarization: 57.52 SS G_CDS: -0.58 Total: 56.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.38 -9.29 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.108 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds