Wall clock time and date at job start Wed Apr 1 2020 04:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 117.00289 * 2 1 4 4 C 1.38756 * 120.05047 * 0.03353 * 3 2 1 5 5 C 1.38121 * 119.93930 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05744 * 359.73875 * 5 4 3 7 7 C 1.38240 * 120.11358 * 0.51296 * 6 5 4 8 8 C 1.50693 * 119.97735 * 179.76771 * 7 6 5 9 9 N 1.46508 * 109.47055 * 269.72143 * 8 7 6 10 10 S 1.65605 * 119.99948 * 162.40741 * 9 8 7 11 11 O 1.42097 * 106.40118 * 310.76628 * 10 9 8 12 12 O 1.42097 * 106.39940 * 177.84423 * 10 9 8 13 13 C 1.76195 * 107.21492 * 64.30614 * 10 9 8 14 14 C 1.37647 * 120.12702 * 112.88317 * 13 10 9 15 15 C 1.38613 * 120.24386 * 180.32098 * 14 13 10 16 16 C 1.38652 * 120.50479 * 359.66678 * 15 14 13 17 17 C 1.37593 * 120.24992 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.13233 * 292.57371 * 13 10 9 19 19 C 1.41401 * 120.23960 * 359.97438 * 18 13 10 20 20 H 1.07994 * 119.99901 * 317.26570 * 19 18 13 21 21 C 1.39946 * 119.99807 * 137.26868 * 19 18 13 22 22 N 1.30817 * 119.99928 * 152.68042 * 21 19 18 23 23 Si 1.86802 * 120.00002 * 332.67916 * 21 19 18 24 24 H 1.48503 * 109.47263 * 268.47766 * 23 21 19 25 25 H 1.48497 * 109.47292 * 28.47621 * 23 21 19 26 26 H 1.48496 * 109.47220 * 148.47590 * 23 21 19 27 27 C 1.38172 * 120.05124 * 359.48970 * 7 6 5 28 28 H 1.08997 * 109.47537 * 59.99085 * 1 2 3 29 29 H 1.09002 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46760 * 299.99820 * 1 2 3 31 31 H 1.07999 * 120.03042 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.96957 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.94521 * 180.27813 * 6 5 4 34 34 H 1.08997 * 109.47415 * 149.72418 * 8 7 6 35 35 H 1.09004 * 109.47458 * 29.72030 * 8 7 6 36 36 H 0.96997 * 119.99751 * 342.41642 * 9 8 7 37 37 H 1.07997 * 119.87797 * 0.02562 * 14 13 10 38 38 H 1.08002 * 119.74409 * 179.69540 * 15 14 13 39 39 H 1.08007 * 119.87647 * 180.02562 * 16 15 14 40 40 H 1.08001 * 120.12941 * 180.02562 * 17 16 15 41 41 H 0.97000 * 120.00388 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.02766 * 180.23491 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0007 5 6 1.9209 3.6047 0.0012 6 6 3.3019 3.6757 0.0065 7 6 4.0560 2.5171 0.0006 8 6 5.5608 2.5981 0.0011 9 7 6.0488 2.6248 -1.3800 10 16 7.5883 3.1419 -1.7044 11 8 7.7500 4.3758 -1.0185 12 8 7.7714 3.0022 -3.1066 13 6 8.6932 2.0005 -0.9422 14 6 9.4964 1.1944 -1.7166 15 6 10.3617 0.2909 -1.1196 16 6 10.4339 0.1928 0.2615 17 6 9.6449 0.9931 1.0554 18 6 8.7626 1.9140 0.4604 19 6 7.9474 2.7420 1.2662 20 1 7.8206 3.7844 1.0142 21 6 7.3050 2.2106 2.3902 22 7 7.0138 2.9844 3.4039 23 14 6.8635 0.3963 2.4430 24 1 5.4884 0.2059 1.9154 25 1 7.8238 -0.3714 1.6102 26 1 6.9271 -0.0881 3.8453 27 6 3.4311 1.2848 0.0000 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2128 2.3204 0.0008 32 1 1.3340 4.5113 0.0022 33 1 3.7923 4.6380 0.0115 34 1 5.9713 1.7288 0.5147 35 1 5.8757 3.5062 0.5153 36 1 5.4702 2.3397 -2.1044 37 1 9.4489 1.2628 -2.7934 38 1 10.9848 -0.3411 -1.7351 39 1 11.1121 -0.5144 0.7160 40 1 9.7030 0.9154 2.1311 41 1 6.5682 2.6163 4.1829 42 1 4.0206 0.3799 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:09 Heat of formation + Delta-G solvation = -82.064647 kcal Electronic energy + Delta-G solvation = -28816.260542 eV Core-core repulsion = 24852.649102 eV Total energy + Delta-G solvation = -3963.611439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13675 -39.61782 -38.82739 -38.09869 -36.71760 -36.24742 -35.36799 -32.43733 -32.06506 -31.74364 -31.15669 -28.19605 -27.41315 -26.29761 -23.67955 -23.52458 -22.90659 -22.10063 -20.26526 -19.57981 -19.10253 -18.51060 -17.92283 -17.41869 -17.13346 -16.94505 -16.82094 -16.62567 -16.06117 -15.98232 -15.45510 -15.12985 -15.01202 -14.78828 -14.62976 -14.28020 -14.00045 -13.77676 -13.63610 -13.47034 -13.18473 -13.04101 -13.00773 -12.89229 -12.81862 -12.61101 -12.46367 -12.30224 -11.97824 -11.96779 -11.77905 -11.70816 -11.21119 -11.07105 -10.28707 -9.97097 -9.86262 -9.41127 -9.19940 -8.96079 -6.63102 -0.28856 0.31294 0.36242 0.44888 0.80191 1.25438 1.35797 1.42321 2.09582 2.29664 2.34965 2.48208 2.80862 2.89900 3.30423 3.66185 3.81761 3.85285 4.11287 4.25221 4.26606 4.36610 4.38336 4.40839 4.41237 4.51959 4.59913 4.63216 4.73542 4.80082 4.84162 4.95493 5.01700 5.12070 5.25585 5.27257 5.41033 5.43327 5.57476 5.66063 5.76964 5.77958 5.87720 6.11818 6.22857 6.38443 6.44760 6.58878 6.74574 8.07297 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.004641 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.807582 B = 6032.156187 C = 6788.894132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.116 3.884 4 C -0.200 4.200 5 C -0.075 4.075 6 C -0.152 4.152 7 C -0.068 4.068 8 C 0.170 3.830 9 N -1.102 6.102 10 S 2.722 3.278 11 O -0.998 6.998 12 O -1.004 7.004 13 C -0.776 4.776 14 C -0.009 4.009 15 C -0.237 4.237 16 C -0.056 4.056 17 C -0.220 4.220 18 C 0.151 3.849 19 C -0.516 4.516 20 H 0.102 0.898 21 C 0.087 3.913 22 N -0.803 5.803 23 Si 0.888 3.112 24 H -0.243 1.243 25 H -0.227 1.227 26 H -0.266 1.266 27 C -0.159 4.159 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.420 0.580 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.105 0.895 41 H 0.298 0.702 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.145 -6.082 -3.549 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.071 3.929 4 C -0.218 4.218 5 C -0.093 4.093 6 C -0.171 4.171 7 C -0.069 4.069 8 C 0.045 3.955 9 N -0.862 5.862 10 S 2.818 3.182 11 O -0.988 6.988 12 O -0.994 6.994 13 C -0.870 4.870 14 C -0.029 4.029 15 C -0.257 4.257 16 C -0.074 4.074 17 C -0.240 4.240 18 C 0.146 3.854 19 C -0.544 4.544 20 H 0.119 0.881 21 C -0.135 4.135 22 N -0.425 5.425 23 Si 0.708 3.292 24 H -0.168 1.168 25 H -0.150 1.150 26 H -0.191 1.191 27 C -0.179 4.179 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.255 0.745 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.855 -5.335 -3.629 14.383 hybrid contribution -0.068 -0.991 0.651 1.188 sum -12.923 -6.327 -2.978 14.693 Atomic orbital electron populations 1.23377 0.76182 1.05607 1.02511 1.86055 1.23764 1.26748 1.88757 1.19052 0.91744 0.85296 0.96809 1.21561 1.01349 0.91419 1.07515 1.21277 0.93564 0.98457 0.96026 1.21255 0.94929 0.97898 1.03000 1.19861 0.94911 0.93278 0.98883 1.20620 0.89745 1.03506 0.81638 1.55219 1.31362 1.85286 1.14290 1.00311 0.72748 0.73764 0.71334 1.93469 1.85915 1.43806 1.75574 1.93438 1.86306 1.87922 1.31759 1.30323 1.25278 1.27035 1.04358 1.20749 0.91971 0.91328 0.98828 1.21063 1.05422 1.04315 0.94850 1.21346 0.96076 0.95719 0.94241 1.21529 1.00692 1.02973 0.98801 1.17253 0.89213 0.89189 0.89699 1.19982 1.27361 0.99227 1.07822 0.88086 1.26450 0.92707 1.02298 0.92027 1.69785 1.28113 1.40698 1.03944 0.86578 0.81895 0.80673 0.80084 1.16764 1.14957 1.19067 1.20402 0.92535 0.97880 1.07041 0.91239 0.86457 0.91544 0.82217 0.82379 0.85492 0.91474 0.89793 0.74470 0.85193 0.84375 0.84553 0.87689 0.89126 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.48 10.50 -92.49 -0.97 -9.45 16 3 C 0.12 3.20 6.69 22.51 0.15 3.36 16 4 C -0.20 -4.41 9.04 22.37 0.20 -4.20 16 5 C -0.08 -1.74 10.04 22.25 0.22 -1.52 16 6 C -0.15 -4.55 9.70 22.28 0.22 -4.33 16 7 C -0.07 -2.32 5.28 -19.88 -0.11 -2.43 16 8 C 0.17 6.80 4.18 85.63 0.36 7.15 16 9 N -1.10 -41.65 5.98 -190.78 -1.14 -42.79 16 10 S 2.72 119.18 5.44 -56.49 -0.31 118.87 16 11 O -1.00 -50.32 15.08 -128.00 -1.93 -52.25 16 12 O -1.00 -44.28 16.97 -128.00 -2.17 -46.45 16 13 C -0.78 -35.42 5.94 22.73 0.13 -35.28 16 14 C -0.01 -0.37 9.54 22.22 0.21 -0.16 16 15 C -0.24 -8.77 10.05 22.46 0.23 -8.55 16 16 C -0.06 -2.11 10.02 22.22 0.22 -1.89 16 17 C -0.22 -9.78 6.92 22.73 0.16 -9.62 16 18 C 0.15 7.28 4.59 -21.29 -0.10 7.18 16 19 C -0.52 -26.30 5.14 23.46 0.12 -26.18 16 20 H 0.10 5.76 5.38 -2.91 -0.02 5.75 16 21 C 0.09 4.16 4.23 85.26 0.36 4.52 16 22 N -0.80 -39.57 13.93 21.83 0.30 -39.27 16 23 Si 0.89 36.45 24.37 68.60 1.67 38.13 16 24 H -0.24 -9.52 6.95 99.48 0.69 -8.83 16 25 H -0.23 -9.37 5.63 99.48 0.56 -8.81 16 26 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 27 C -0.16 -5.22 9.64 22.37 0.22 -5.00 16 28 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 29 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 0.77 7.66 -2.38 -0.02 0.75 16 31 H 0.16 2.33 6.30 -2.91 -0.02 2.31 16 32 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.07 2.83 3.17 -2.39 -0.01 2.82 16 35 H 0.08 3.77 5.88 -2.38 -0.01 3.76 16 36 H 0.42 13.34 8.66 -96.74 -0.84 12.50 16 37 H 0.13 4.82 7.32 -2.91 -0.02 4.80 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.11 4.55 7.03 -2.91 -0.02 4.53 16 41 H 0.30 13.21 8.30 -92.71 -0.77 12.44 16 42 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -65.50 348.56 -0.76 -66.25 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: 0.08 Total: 42.57 kcal Atomic # 6 Polarization: -79.32 SS G_CDS: 3.71 Total: -75.61 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -0.84 Total: -82.06 kcal Atomic # 8 Polarization: -103.07 SS G_CDS: -5.07 Total: -108.15 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 1.67 Total: 38.13 kcal Atomic # 16 Polarization: 119.18 SS G_CDS: -0.31 Total: 118.87 kcal Total: -65.50 -0.76 -66.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.812 kcal (2) G-P(sol) polarization free energy of solvation -65.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds