Wall clock time and date at job start Wed Apr 1 2020 04:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48500 * 109.47199 * 89.99790 * 3 2 1 5 5 H 1.48499 * 109.46918 * 330.00264 * 3 2 1 6 6 H 1.48501 * 109.47625 * 210.00021 * 3 2 1 7 7 C 1.37880 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99801 * 343.52582 * 7 2 1 9 9 C 1.50699 * 120.00558 * 163.52002 * 7 2 1 10 10 C 1.53041 * 109.46181 * 294.58628 * 9 7 2 11 11 C 1.53192 * 109.31436 * 178.60997 * 10 9 7 12 12 N 1.46925 * 108.77452 * 54.63269 * 11 10 9 13 13 C 1.34775 * 120.63295 * 126.41372 * 12 11 10 14 14 O 1.21282 * 120.00091 * 179.97438 * 13 12 11 15 15 C 1.50700 * 119.99969 * 359.97438 * 13 12 11 16 16 S 1.81394 * 109.47226 * 180.02562 * 15 13 12 17 17 C 1.81403 * 102.99971 * 179.97438 * 16 15 13 18 18 H 1.09001 * 110.01154 * 53.61981 * 17 16 15 19 19 C 1.53875 * 110.02813 * 292.19193 * 17 16 15 20 20 C 1.54166 * 108.70420 * 193.52938 * 19 17 16 21 21 S 1.82917 * 105.08872 * 27.90694 * 20 19 17 22 22 O 1.42102 * 109.35333 * 244.47945 * 21 20 19 23 23 O 1.42099 * 109.35300 * 111.27379 * 21 20 19 24 24 C 1.55045 * 110.02805 * 174.99688 * 17 16 15 25 25 C 1.46933 * 118.74095 * 306.39436 * 12 11 10 26 26 C 1.53033 * 109.46460 * 174.51237 * 9 7 2 27 27 H 0.97008 * 120.00207 * 174.81002 * 1 2 3 28 28 H 1.09002 * 109.45629 * 54.53899 * 9 7 2 29 29 H 1.09003 * 109.49128 * 298.56107 * 10 9 7 30 30 H 1.09002 * 109.50040 * 58.65477 * 10 9 7 31 31 H 1.09001 * 109.58535 * 294.84669 * 11 10 9 32 32 H 1.08995 * 109.58592 * 174.41370 * 11 10 9 33 33 H 1.09007 * 109.47250 * 300.00206 * 15 13 12 34 34 H 1.08994 * 109.47205 * 59.99630 * 15 13 12 35 35 H 1.09008 * 109.64569 * 313.37803 * 19 17 16 36 36 H 1.08991 * 109.65066 * 73.67454 * 19 17 16 37 37 H 1.08995 * 110.31507 * 269.00359 * 20 19 17 38 38 H 1.09000 * 110.31951 * 146.80754 * 20 19 17 39 39 H 1.08994 * 110.79395 * 279.99250 * 24 17 16 40 40 H 1.09002 * 110.78865 * 43.45939 * 24 17 16 41 41 H 1.09007 * 109.58134 * 293.82190 * 25 12 11 42 42 H 1.08992 * 109.70551 * 173.46865 * 25 12 11 43 43 H 1.09005 * 109.49728 * 301.34380 * 26 9 7 44 44 H 1.09003 * 109.49857 * 61.43467 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 1.4465 2.6526 -0.7000 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4977 -2.1101 0.2662 9 6 3.4651 -1.2211 -0.3697 10 6 3.6262 -0.8228 -1.8385 11 6 5.1145 -0.8177 -2.2017 12 7 5.6878 -2.1280 -1.8654 13 6 6.3631 -2.8397 -2.7894 14 8 6.8320 -3.9199 -2.4992 15 6 6.5355 -2.2933 -4.1833 16 16 7.4806 -3.4753 -5.1834 17 6 7.5815 -2.6546 -6.7980 18 1 7.9871 -1.6497 -6.6810 19 6 6.1864 -2.5890 -7.4439 20 6 6.3466 -2.2082 -8.9292 21 16 7.9995 -2.8308 -9.4047 22 8 8.8379 -1.7332 -9.7390 23 8 7.8515 -3.9136 -10.3129 24 6 8.4764 -3.4799 -7.7582 25 6 5.5113 -2.6476 -0.5024 26 6 4.0187 -2.6320 -0.1582 27 1 -0.4851 -0.8367 -0.0760 28 1 4.0120 -0.5184 0.2590 29 1 3.1002 -1.5392 -2.4695 30 1 3.2106 0.1729 -1.9932 31 1 5.6260 -0.0389 -1.6360 32 1 5.2293 -0.6319 -3.2696 33 1 5.5563 -2.1363 -4.6357 34 1 7.0711 -1.3451 -4.1381 35 1 5.7000 -3.5613 -7.3653 36 1 5.5823 -1.8372 -6.9360 37 1 6.3008 -1.1259 -9.0494 38 1 5.5740 -2.6896 -9.5288 39 1 9.5317 -3.2933 -7.5597 40 1 8.2491 -4.5431 -7.6809 41 1 6.0552 -2.0179 0.2019 42 1 5.8887 -3.6685 -0.4465 43 1 3.8823 -2.9241 0.8831 44 1 3.4889 -3.3314 -0.8050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701304551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:55 Heat of formation + Delta-G solvation = -134.368495 kcal Electronic energy + Delta-G solvation = -26080.430008 eV Core-core repulsion = 22249.994455 eV Total energy + Delta-G solvation = -3830.435553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.17122 -38.56975 -38.13656 -37.41528 -36.98631 -35.42215 -33.58500 -32.35322 -30.98892 -30.62012 -27.82903 -26.36914 -24.28397 -24.04788 -22.65755 -21.58128 -19.96465 -19.80603 -19.67132 -18.38186 -18.10463 -17.81068 -17.26050 -16.77384 -16.59010 -16.34566 -15.92739 -15.53937 -15.29494 -15.13107 -14.98843 -14.91201 -14.63010 -14.45110 -14.12025 -13.83819 -13.71136 -13.48054 -13.29172 -13.19043 -13.17681 -13.09627 -12.94206 -12.54737 -12.28912 -12.13673 -12.09129 -11.81229 -11.69594 -11.42274 -11.28656 -11.22007 -11.02161 -10.89183 -10.71362 -10.45518 -9.66597 -8.74286 -8.68076 -6.33601 -0.98629 0.35727 1.37908 1.49777 1.52597 1.59044 1.63609 1.76675 2.03588 2.57262 2.60402 3.01506 3.10795 3.30191 3.42233 3.47545 3.68986 3.92078 3.98866 4.00431 4.05291 4.13464 4.23223 4.26086 4.31198 4.44227 4.46807 4.60031 4.63182 4.79464 4.81639 4.82198 4.88482 4.95916 5.02077 5.10435 5.14740 5.39548 5.56561 5.77710 6.04223 6.14748 6.37038 6.58957 7.04395 7.45710 8.66719 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.002365 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.203863 B =11837.657178 C =12756.420201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.025 4.025 3 Si 1.085 2.915 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.215 1.215 7 C -0.602 4.602 8 H 0.005 0.995 9 C 0.017 3.983 10 C -0.129 4.129 11 C 0.105 3.895 12 N -0.600 5.600 13 C 0.524 3.476 14 O -0.574 6.574 15 C -0.126 4.126 16 S -0.196 6.196 17 C -0.077 4.077 18 H 0.136 0.864 19 C -0.119 4.119 20 C -0.565 4.565 21 S 2.403 3.597 22 O -0.972 6.972 23 O -0.979 6.979 24 C -0.561 4.561 25 C 0.119 3.881 26 C -0.108 4.108 27 H 0.249 0.751 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.794 0.417 -17.254 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.222 4.222 3 Si 0.905 3.095 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.138 1.138 7 C -0.640 4.640 8 H 0.024 0.976 9 C -0.002 4.002 10 C -0.167 4.167 11 C -0.017 4.017 12 N -0.333 5.333 13 C 0.312 3.688 14 O -0.454 6.454 15 C -0.276 4.276 16 S 0.032 5.968 17 C -0.207 4.207 18 H 0.154 0.846 19 C -0.159 4.159 20 C -0.699 4.699 21 S 2.590 3.410 22 O -0.969 6.969 23 O -0.976 6.976 24 C -0.692 4.692 25 C -0.004 4.004 26 C -0.146 4.146 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.179 0.821 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.168 0.832 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 18.787 0.473 -17.587 25.739 hybrid contribution -1.797 -1.193 0.920 2.345 sum 16.989 -0.720 -16.667 23.811 Atomic orbital electron populations 1.70948 1.08820 1.29390 1.49019 1.27415 0.95942 1.06758 0.92055 0.83675 0.76770 0.70860 0.78182 1.20908 1.21805 1.13776 1.22266 0.96951 0.94290 1.50462 0.97639 1.19017 0.93934 0.93653 0.93619 1.22235 0.95057 1.01295 0.98138 1.22118 0.93266 0.83231 1.03091 1.48149 1.53145 1.20627 1.11376 1.20230 0.77683 0.84218 0.86671 1.90706 1.50758 1.22806 1.81124 1.23673 1.06501 1.03314 0.94107 1.87950 1.72383 1.30030 1.06405 1.24010 0.98110 1.03253 0.95366 0.84601 1.22482 0.95492 1.06401 0.91575 1.30353 1.19980 1.14382 1.05155 1.08565 0.79709 0.75054 0.77671 1.93586 1.66630 1.53643 1.83033 1.93575 1.86825 1.55493 1.61711 1.30531 1.09977 1.11151 1.17502 1.21595 0.95951 1.00282 0.82548 1.21722 0.94393 0.98365 1.00163 0.94253 0.94620 0.93983 0.91300 0.89275 0.86573 0.84498 0.83595 0.88182 0.86652 0.82102 0.82382 0.82448 0.83235 0.89813 0.90514 0.92361 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.58 13.69 21.45 0.29 -57.28 16 2 C -0.03 -1.37 5.34 84.66 0.45 -0.92 16 3 Si 1.09 44.48 26.24 68.60 1.80 46.28 16 4 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.22 -6.82 5.52 99.48 0.55 -6.27 16 7 C -0.60 -32.23 8.83 25.60 0.23 -32.00 16 8 H 0.01 0.32 7.99 -2.91 -0.02 0.30 16 9 C 0.02 0.69 1.61 -11.52 -0.02 0.67 16 10 C -0.13 -4.28 4.74 30.67 0.15 -4.13 16 11 C 0.10 2.34 6.34 86.36 0.55 2.88 16 12 N -0.60 -15.86 2.97 -818.91 -2.43 -18.30 16 13 C 0.52 13.69 7.72 87.66 0.68 14.37 16 14 O -0.57 -19.82 15.28 -3.03 -0.05 -19.87 16 15 C -0.13 -1.96 4.65 71.24 0.33 -1.63 16 16 S -0.20 -3.43 20.30 -56.49 -1.15 -4.58 16 17 C -0.08 -0.63 3.08 31.59 0.10 -0.54 16 18 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 19 C -0.12 -0.63 5.64 31.28 0.18 -0.45 16 20 C -0.56 -2.14 7.26 72.38 0.53 -1.61 16 21 S 2.40 25.26 6.11 -56.49 -0.34 24.91 16 22 O -0.97 -17.30 18.15 -127.49 -2.31 -19.62 16 23 O -0.98 -18.81 18.15 -127.49 -2.31 -21.12 16 24 C -0.56 -4.58 6.68 72.68 0.49 -4.09 16 25 C 0.12 3.57 6.43 86.36 0.56 4.12 16 26 C -0.11 -4.02 5.30 30.67 0.16 -3.86 16 27 H 0.25 15.57 8.73 -92.70 -0.81 14.76 16 28 H 0.04 1.39 6.73 -2.39 -0.02 1.37 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 2.30 5.07 -2.39 -0.01 2.29 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.12 1.59 5.93 -2.39 -0.01 1.58 16 33 H 0.14 1.52 7.39 -2.39 -0.02 1.51 16 34 H 0.15 1.32 7.94 -2.39 -0.02 1.30 16 35 H 0.10 0.61 8.11 -2.38 -0.02 0.59 16 36 H 0.12 0.27 7.84 -2.39 -0.02 0.25 16 37 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.15 1.21 8.11 -2.39 -0.02 1.19 16 41 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 42 H 0.08 2.43 7.01 -2.39 -0.02 2.41 16 43 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -85.70 368.37 -1.34 -87.04 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.80 Total: 9.71 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 4.36 Total: -27.19 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -2.14 Total: -75.58 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -4.67 Total: -60.61 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.80 Total: 46.28 kcal Atomic # 16 Polarization: 21.82 SS G_CDS: -1.49 Total: 20.33 kcal Total: -85.70 -1.34 -87.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701304551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.324 kcal (2) G-P(sol) polarization free energy of solvation -85.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds