Wall clock time and date at job start Wed Apr 1 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00352 * 2 1 4 4 N 1.46495 * 109.47216 * 125.00119 * 3 2 1 5 5 C 1.35059 * 125.56709 * 90.02486 * 4 3 2 6 6 O 1.21295 * 127.28656 * 359.97438 * 5 4 3 7 7 C 1.49986 * 105.43326 * 179.97438 * 5 4 3 8 8 O 1.21294 * 127.28845 * 179.73923 * 7 5 4 9 9 N 1.35065 * 105.43029 * 0.02562 * 7 5 4 10 10 C 1.46493 * 125.56972 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.47541 * 90.01981 * 10 9 7 12 12 O 1.21298 * 119.99727 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00199 * 180.02562 * 11 10 9 14 14 C 1.40595 * 120.00232 * 179.97438 * 13 11 10 15 15 C 1.40647 * 126.07733 * 359.69476 * 14 13 11 16 16 N 1.30913 * 108.38423 * 179.81552 * 15 14 13 17 17 N 1.40065 * 108.40855 * 0.43867 * 16 15 14 18 18 C 1.37319 * 126.07276 * 179.69646 * 17 16 15 19 19 H 1.08007 * 120.00251 * 180.02562 * 18 17 16 20 20 C 1.38991 * 120.00044 * 0.02714 * 18 17 16 21 21 N 1.31297 * 119.99764 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47711 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47281 * 119.99745 * 22 20 18 25 25 H 1.48503 * 109.47234 * 239.99719 * 22 20 18 26 26 C 1.35682 * 126.08588 * 180.02562 * 14 13 11 27 27 C 1.34280 * 125.56658 * 270.00238 * 4 3 2 28 28 O 1.21477 * 124.29554 * 0.02562 * 27 4 3 29 29 H 1.08000 * 120.00275 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.99680 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99482 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46947 * 4.99684 * 3 2 1 33 33 H 1.09004 * 109.47049 * 245.00243 * 3 2 1 34 34 H 1.09000 * 109.47320 * 210.02522 * 10 9 7 35 35 H 1.09003 * 109.46963 * 330.01680 * 10 9 7 36 36 H 0.97008 * 120.00108 * 0.02562 * 13 11 10 37 37 H 1.07997 * 125.80994 * 359.95643 * 15 14 13 38 38 H 0.96993 * 119.99663 * 180.02562 * 21 20 18 39 39 H 1.08000 * 126.24282 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.2721 0.8966 1.1078 6 8 4.8672 0.4153 0.1668 7 6 4.8002 1.1341 2.4913 8 8 5.9114 0.8817 2.9071 9 7 3.7748 1.6827 3.1781 10 6 3.8126 2.0905 4.5846 11 6 4.2590 3.5268 4.6795 12 8 4.5203 4.1484 3.6713 13 7 4.3688 4.1201 5.8845 14 6 4.7857 5.4599 5.9731 15 6 5.1248 6.2949 4.8933 16 7 5.4582 7.4686 5.3677 17 7 5.3554 7.4267 6.7640 18 6 5.6266 8.4606 7.6260 19 1 5.5141 8.3195 8.6909 20 6 6.0459 9.6887 7.1283 21 7 6.1831 9.8601 5.8338 22 14 6.4141 11.0953 8.3009 23 1 6.1829 10.6486 9.6981 24 1 7.8301 11.5139 8.1426 25 1 5.5217 12.2420 7.9943 26 6 4.9386 6.1755 7.1157 27 6 2.7149 1.7934 2.3611 28 8 1.6401 2.2525 2.6924 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 2.8180 1.9897 5.0191 35 1 4.5125 1.4559 5.1283 36 1 4.1608 3.6226 6.6910 37 1 5.1103 6.0160 3.8500 38 1 6.4760 10.7170 5.4864 39 1 4.7621 5.8200 8.1201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729351775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:52 Heat of formation + Delta-G solvation = 5.180684 kcal Electronic energy + Delta-G solvation = -29462.663351 eV Core-core repulsion = 24988.834690 eV Total energy + Delta-G solvation = -4473.828661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.57833 -41.73739 -40.60973 -40.46871 -39.78745 -37.72666 -37.04377 -35.96608 -35.02505 -34.64903 -32.29962 -31.15282 -29.48830 -27.74949 -26.82509 -26.58525 -23.60001 -23.29744 -22.84122 -21.89673 -21.25651 -21.04264 -19.54451 -19.17761 -18.86187 -18.38250 -17.90526 -17.76198 -17.39158 -17.26952 -16.70984 -16.44998 -16.32559 -16.06170 -15.82137 -15.58817 -15.47964 -15.18221 -14.88714 -14.74013 -14.52781 -14.03055 -13.49910 -13.48055 -13.31592 -13.29937 -12.92703 -12.86047 -12.50326 -12.33623 -12.02805 -11.89891 -11.84110 -11.43563 -11.17427 -11.04740 -10.83528 -10.64583 -10.51179 -10.11123 -8.54913 -8.47304 -6.24747 -0.94662 0.44756 0.70124 1.16948 1.27581 1.30387 1.40337 1.45386 1.49792 1.59184 1.84678 2.04726 2.27629 2.49070 2.64279 2.89104 3.09284 3.40234 3.66955 3.80968 3.93090 3.98881 4.13084 4.17258 4.23049 4.44723 4.50486 4.59986 4.63818 4.98408 5.00288 5.05664 5.29284 5.31888 5.41758 5.42291 5.61499 5.70213 5.91909 5.96006 6.27936 6.32156 6.66812 6.73352 7.30259 7.46903 7.67742 8.52318 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.002176 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.677911 B =12867.062481 C =13077.353654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.202 4.202 3 C 0.141 3.859 4 N -0.561 5.561 5 C 0.522 3.478 6 O -0.428 6.428 7 C 0.516 3.484 8 O -0.429 6.429 9 N -0.556 5.556 10 C 0.113 3.887 11 C 0.478 3.522 12 O -0.576 6.576 13 N -0.604 5.604 14 C -0.045 4.045 15 C -0.060 4.060 16 N -0.313 5.313 17 N -0.169 5.169 18 C -0.352 4.352 19 H 0.143 0.857 20 C -0.009 4.009 21 N -0.827 5.827 22 Si 1.019 2.981 23 H -0.238 1.238 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.075 4.075 27 C 0.720 3.280 28 O -0.497 6.497 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.427 0.573 37 H 0.163 0.837 38 H 0.275 0.725 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -21.034 -3.078 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.221 4.221 3 C 0.023 3.977 4 N -0.309 5.309 5 C 0.303 3.697 6 O -0.294 6.294 7 C 0.297 3.703 8 O -0.294 6.294 9 N -0.303 5.303 10 C -0.010 4.010 11 C 0.264 3.736 12 O -0.456 6.456 13 N -0.250 5.250 14 C -0.151 4.151 15 C -0.235 4.235 16 N -0.145 5.145 17 N 0.062 4.938 18 C -0.483 4.483 19 H 0.161 0.839 20 C -0.220 4.220 21 N -0.455 5.455 22 Si 0.838 3.162 23 H -0.161 1.161 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.225 4.225 27 C 0.423 3.577 28 O -0.367 6.367 29 H 0.138 0.862 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.188 0.812 35 H 0.187 0.813 36 H 0.265 0.735 37 H 0.180 0.820 38 H 0.085 0.915 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -10.163 -19.430 -4.346 22.354 hybrid contribution 0.056 -0.074 0.491 0.500 sum -10.107 -19.503 -3.855 22.302 Atomic orbital electron populations 1.24211 0.95274 1.03670 0.94704 1.23048 0.96743 0.97450 1.04852 1.21204 0.91510 0.98800 0.86171 1.46796 1.13832 1.57541 1.12720 1.20664 0.82149 0.77730 0.89194 1.90834 1.62633 1.37474 1.38428 1.20951 0.84579 0.77121 0.87645 1.90847 1.18364 1.46101 1.74130 1.46159 1.12824 1.57546 1.13807 1.21839 1.09730 0.91427 0.77994 1.21439 0.78679 0.90332 0.83149 1.90638 1.51478 1.66326 1.37123 1.42225 1.64499 1.09101 1.09146 1.17278 1.17967 0.87188 0.92685 1.24116 1.07531 0.92112 0.99783 1.78163 1.27007 1.20184 0.89160 1.44860 1.37019 1.07800 1.04138 1.20670 1.47544 0.89586 0.90474 0.83928 1.26900 0.94756 1.02075 0.98283 1.70411 1.35525 1.25147 1.14385 0.84533 0.77946 0.75502 0.78208 1.16098 1.19954 1.19903 1.22058 1.14408 0.86971 0.99086 1.15859 0.83875 0.77391 0.80553 1.91019 1.23509 1.45240 1.76884 0.86180 0.87429 0.86471 0.86895 0.86098 0.81163 0.81252 0.73455 0.82047 0.91498 0.79005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 14.32 67.79 0.97 -0.33 16 2 C -0.20 -2.33 9.85 25.65 0.25 -2.08 16 3 C 0.14 1.97 6.30 85.63 0.54 2.51 16 4 N -0.56 -10.95 2.64 -778.33 -2.06 -13.01 16 5 C 0.52 11.75 8.31 87.39 0.73 12.47 16 6 O -0.43 -11.00 17.88 -3.08 -0.06 -11.06 16 7 C 0.52 12.53 8.31 87.39 0.73 13.25 16 8 O -0.43 -12.37 17.88 -3.07 -0.05 -12.43 16 9 N -0.56 -12.11 2.15 -778.33 -1.67 -13.78 16 10 C 0.11 1.96 6.34 85.63 0.54 2.50 16 11 C 0.48 14.53 7.87 87.66 0.69 15.22 16 12 O -0.58 -23.93 13.58 -3.09 -0.04 -23.98 16 13 N -0.60 -18.20 5.47 -303.94 -1.66 -19.86 16 14 C -0.04 -1.97 6.90 37.73 0.26 -1.71 16 15 C -0.06 -3.26 10.85 85.42 0.93 -2.33 16 16 N -0.31 -18.91 10.40 -56.47 -0.59 -19.50 16 17 N -0.17 -9.28 3.74 -190.01 -0.71 -9.99 16 18 C -0.35 -18.39 10.25 84.01 0.86 -17.53 16 19 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 20 C -0.01 -0.46 5.50 84.95 0.47 0.01 16 21 N -0.83 -48.02 11.81 21.66 0.26 -47.76 16 22 Si 1.02 38.48 29.55 68.60 2.03 40.51 16 23 H -0.24 -7.96 7.11 99.48 0.71 -7.25 16 24 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 26 C -0.07 -3.32 11.49 83.38 0.96 -2.36 16 27 C 0.72 16.19 8.32 179.36 1.49 17.68 16 28 O -0.50 -12.94 17.27 -3.64 -0.06 -13.00 16 29 H 0.12 0.75 8.06 -2.91 -0.02 0.73 16 30 H 0.11 0.93 7.84 -2.91 -0.02 0.90 16 31 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.11 1.48 7.63 -2.39 -0.02 1.46 16 33 H 0.12 1.41 8.10 -2.38 -0.02 1.39 16 34 H 0.17 1.72 7.98 -2.39 -0.02 1.70 16 35 H 0.17 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.43 8.03 8.83 -92.70 -0.82 7.21 16 37 H 0.16 8.96 5.92 -2.91 -0.02 8.94 16 38 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.19 6.45 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -85.91 362.99 5.12 -80.79 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.32 Total: 25.74 kcal Atomic # 6 Polarization: 27.90 SS G_CDS: 9.41 Total: 37.32 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -6.43 Total: -123.89 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -0.21 Total: -60.46 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -85.91 5.12 -80.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729351775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.973 kcal (2) G-P(sol) polarization free energy of solvation -85.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds