Wall clock time and date at job start Wed Apr 1 2020 04:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86807 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47351 * 270.00030 * 3 2 1 5 5 H 1.48493 * 109.46940 * 30.00627 * 3 2 1 6 6 H 1.48508 * 109.46667 * 150.00209 * 3 2 1 7 7 C 1.38950 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00467 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99291 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99565 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00081 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99945 * 180.02562 * 10 9 7 13 13 O 1.45200 * 109.47383 * 179.97438 * 12 10 9 14 14 C 1.34234 * 117.00106 * 179.97438 * 13 12 10 15 15 O 1.20823 * 119.99805 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99800 * 180.02562 * 14 13 12 17 17 O 1.42897 * 109.46997 * 180.02562 * 16 14 13 18 18 C 1.35906 * 117.00080 * 180.02562 * 17 16 14 19 19 C 1.38829 * 119.99618 * 0.02562 * 18 17 16 20 20 C 1.38198 * 120.18250 * 179.97438 * 19 18 17 21 21 C 1.38085 * 120.17354 * 0.02562 * 20 19 18 22 22 C 1.39305 * 119.99335 * 359.97438 * 21 20 19 23 23 C 1.48470 * 120.08626 * 180.02562 * 22 21 20 24 24 N 1.34053 * 126.66690 * 179.68879 * 23 22 21 25 25 N 1.28993 * 107.26352 * 179.87272 * 24 23 22 26 26 N 1.28725 * 108.94062 * 0.39378 * 25 24 23 27 27 H 0.97005 * 125.34291 * 179.76177 * 26 25 24 28 28 N 1.28877 * 109.32340 * 359.75085 * 26 25 24 29 29 C 1.38515 * 119.99815 * 179.97438 * 18 17 16 30 30 H 0.97000 * 120.00035 * 359.97438 * 1 2 3 31 31 H 0.96991 * 120.00422 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47407 * 59.99501 * 12 10 9 33 33 H 1.09004 * 109.47056 * 299.99551 * 12 10 9 34 34 H 1.09006 * 109.47238 * 59.99996 * 16 14 13 35 35 H 1.09000 * 109.47256 * 299.99874 * 16 14 13 36 36 H 1.07998 * 119.91227 * 359.97438 * 19 18 17 37 37 H 1.07994 * 119.91527 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.00177 * 180.27570 * 21 20 19 39 39 H 1.08000 * 120.08704 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 8 2.1873 -5.9665 -0.0016 14 6 1.6742 -7.2069 -0.0016 15 8 0.4764 -7.3652 -0.0008 16 6 2.5922 -8.4020 -0.0016 17 8 1.8139 -9.6005 -0.0022 18 6 2.4935 -10.7775 -0.0017 19 6 3.8817 -10.7774 0.0000 20 6 4.5766 -11.9720 0.0011 21 6 3.8937 -13.1721 0.0000 22 6 2.5007 -13.1807 -0.0017 23 6 1.7643 -14.4699 -0.0023 24 7 0.4336 -14.6317 0.0020 25 7 0.2022 -15.9007 -0.0031 26 7 1.3251 -16.5302 -0.0019 27 1 1.4277 -17.4948 -0.0017 28 7 2.2918 -15.6778 -0.0014 29 6 1.8008 -11.9770 -0.0017 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6174 -4.9204 -0.8913 33 1 0.6168 -4.9208 0.8887 34 1 3.2210 -8.3772 0.8885 35 1 3.2211 -8.3772 -0.8915 36 1 4.4203 -9.8413 0.0004 37 1 5.6565 -11.9669 0.0019 38 1 4.4395 -14.1041 0.0053 39 1 0.7208 -11.9786 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737694896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:33 Heat of formation + Delta-G solvation = -21.547967 kcal Electronic energy + Delta-G solvation = -27461.775438 eV Core-core repulsion = 22986.787735 eV Total energy + Delta-G solvation = -4474.987702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.50139 -41.90414 -41.05433 -40.01496 -38.69192 -37.48199 -36.02413 -35.43218 -34.51433 -33.41474 -32.19548 -31.31392 -30.51833 -29.04618 -26.55148 -25.77554 -25.59937 -23.40526 -23.07340 -21.90170 -21.43439 -20.27272 -20.07128 -19.50265 -18.62849 -18.19207 -18.14457 -18.04656 -17.36871 -16.95606 -16.82657 -16.75197 -16.37813 -15.82795 -15.60448 -15.58308 -15.22464 -14.67749 -14.53248 -14.18610 -14.16122 -13.74058 -13.58123 -13.53310 -13.29182 -12.92992 -12.78428 -12.57144 -12.46334 -12.37104 -12.23438 -12.11182 -12.08485 -11.92170 -11.71504 -11.61785 -11.56531 -10.51263 -10.11046 -9.84705 -9.29783 -8.51367 -6.02150 -0.36789 0.14059 0.38835 0.85317 0.97176 1.26847 1.37289 1.39501 1.44889 1.57672 1.87584 2.20148 2.36591 2.69411 2.76166 3.01361 3.14387 3.17157 3.50438 3.79577 3.96310 3.99397 4.01615 4.07241 4.15881 4.19546 4.22111 4.28286 4.36502 4.43725 4.56539 4.92547 5.19193 5.20978 5.37401 5.38235 5.43097 5.58122 5.62140 5.89648 6.21999 6.44931 6.56394 7.03579 7.07936 7.40531 7.93332 8.65501 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.037241 B = 0.001437 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.677071 B =19479.008217 C =20210.237338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.437 3.563 11 O -0.615 6.615 12 C 0.072 3.928 13 O -0.333 6.333 14 C 0.462 3.538 15 O -0.522 6.522 16 C 0.074 3.926 17 O -0.318 6.318 18 C 0.115 3.885 19 C -0.183 4.183 20 C -0.071 4.071 21 C -0.112 4.112 22 C 0.007 3.993 23 C 0.208 3.792 24 N -0.298 5.298 25 N -0.058 5.058 26 N -0.198 5.198 27 H 0.495 0.505 28 N -0.285 5.285 29 C -0.124 4.124 30 H 0.280 0.720 31 H 0.400 0.600 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.152 0.848 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.446 -32.150 -0.006 33.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.005 4.005 13 O -0.249 6.249 14 C 0.305 3.695 15 O -0.410 6.410 16 C -0.001 4.001 17 O -0.232 6.232 18 C 0.071 3.929 19 C -0.202 4.202 20 C -0.089 4.089 21 C -0.132 4.132 22 C 0.003 3.997 23 C -0.072 4.072 24 N -0.170 5.170 25 N -0.053 5.053 26 N -0.049 5.049 27 H 0.355 0.645 28 N -0.137 5.137 29 C -0.145 4.145 30 H 0.090 0.910 31 H 0.234 0.766 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.181 0.819 37 H 0.188 0.812 38 H 0.169 0.831 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.947 -32.380 0.001 33.116 hybrid contribution -0.374 0.646 -0.008 0.747 sum 6.572 -31.733 -0.007 32.407 Atomic orbital electron populations 1.69673 1.07002 1.29720 1.49136 1.26125 0.96545 1.02607 0.95619 0.84850 0.77924 0.76335 0.78770 1.19484 1.19586 1.19413 1.19747 0.93025 0.83327 1.50678 0.89549 1.41741 1.09582 1.04204 1.63959 1.20035 0.88080 0.85270 0.84209 1.90527 1.15271 1.87659 1.56759 1.22561 0.90104 0.82225 1.05579 1.86480 1.40518 1.14312 1.83576 1.23711 0.88595 0.84815 0.72425 1.90705 1.18090 1.86702 1.45528 1.22120 0.90795 0.78440 1.08753 1.86040 1.35716 1.12105 1.89362 1.18813 0.91436 0.84278 0.98378 1.21849 0.91649 1.01945 1.04743 1.21292 1.01932 0.90012 0.95671 1.21349 0.91243 1.00445 1.00157 1.16962 0.92768 0.85611 1.04327 1.23768 0.88069 0.93127 1.02255 1.76148 1.14938 1.07159 1.18772 1.78897 1.11449 0.99806 1.15158 1.47827 1.00147 1.13333 1.43620 0.64511 1.74868 1.18015 0.99164 1.21695 1.20280 1.00795 0.89091 1.04303 0.90998 0.76586 0.87458 0.87455 0.84072 0.84083 0.81938 0.81205 0.83058 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.22 13.05 21.66 0.28 -47.94 16 2 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 3 Si 1.00 41.45 29.55 68.60 2.03 43.48 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.34 -18.71 9.68 84.04 0.81 -17.90 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.08 5.29 -306.99 -1.62 -29.70 16 10 C 0.44 20.74 7.86 87.66 0.69 21.43 16 11 O -0.62 -33.76 16.08 15.72 0.25 -33.51 16 12 C 0.07 2.63 5.94 71.23 0.42 3.05 16 13 O -0.33 -11.33 9.76 -45.10 -0.44 -11.77 16 14 C 0.46 13.41 8.03 71.24 0.57 13.99 16 15 O -0.52 -18.49 16.25 28.40 0.46 -18.03 16 16 C 0.07 1.39 5.33 71.24 0.38 1.77 16 17 O -0.32 -7.43 9.67 -73.41 -0.71 -8.14 16 18 C 0.12 2.20 6.68 22.48 0.15 2.36 16 19 C -0.18 -2.24 9.03 22.40 0.20 -2.04 16 20 C -0.07 -0.67 10.03 22.22 0.22 -0.45 16 21 C -0.11 -1.37 9.70 22.49 0.22 -1.15 16 22 C 0.01 0.12 5.87 -20.05 -0.12 0.00 16 23 C 0.21 3.93 7.94 137.38 1.09 5.02 16 24 N -0.30 -6.55 12.23 -52.18 -0.64 -7.19 16 25 N -0.06 -0.98 13.47 37.02 0.50 -0.49 16 26 N -0.20 -1.92 7.90 37.02 0.29 -1.62 16 27 H 0.50 -0.43 8.96 -347.53 -3.12 -3.54 16 28 N -0.28 -4.00 12.08 -52.12 -0.63 -4.63 16 29 C -0.12 -2.57 9.64 22.58 0.22 -2.36 16 30 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 31 H 0.40 19.06 7.90 -92.72 -0.73 18.32 16 32 H 0.11 3.52 8.13 -2.38 -0.02 3.50 16 33 H 0.11 3.52 8.13 -2.38 -0.02 3.50 16 34 H 0.14 1.78 7.66 -2.38 -0.02 1.76 16 35 H 0.14 1.78 7.66 -2.39 -0.02 1.76 16 36 H 0.16 1.14 6.28 -2.91 -0.02 1.12 16 37 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 38 H 0.15 1.31 7.88 -2.91 -0.02 1.29 16 39 H 0.13 3.02 7.89 -2.91 -0.02 3.00 16 Total: -1.00 -79.58 361.89 2.42 -77.16 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -2.68 Total: 18.61 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 5.33 Total: 23.77 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -1.82 Total: -91.57 kcal Atomic # 8 Polarization: -71.01 SS G_CDS: -0.44 Total: -71.45 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -79.58 2.42 -77.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737694896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.612 kcal (2) G-P(sol) polarization free energy of solvation -79.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds