Wall clock time and date at job start Wed Apr 1 2020 04:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00053 * 2 1 4 4 O 1.20822 * 119.99697 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99948 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47123 * 180.02562 * 5 3 2 7 7 C 1.37094 * 120.00259 * 270.00162 * 6 5 3 8 8 H 1.08005 * 120.00060 * 202.99392 * 7 6 5 9 9 C 1.38952 * 119.99771 * 22.98925 * 7 6 5 10 10 N 1.31403 * 120.00299 * 351.28851 * 9 7 6 11 11 Si 1.86807 * 119.99879 * 171.28156 * 9 7 6 12 12 H 1.48507 * 109.46928 * 90.00196 * 11 9 7 13 13 H 1.48493 * 109.47374 * 210.00497 * 11 9 7 14 14 H 1.48502 * 109.47202 * 330.00983 * 11 9 7 15 15 C 1.34782 * 119.99944 * 90.00353 * 6 5 3 16 16 O 1.21294 * 119.99636 * 355.03214 * 15 6 5 17 17 C 1.50694 * 119.99899 * 175.03760 * 15 6 5 18 18 C 1.53003 * 109.46820 * 184.98251 * 17 15 6 19 19 C 1.53006 * 109.47239 * 179.97438 * 18 17 15 20 20 C 1.52990 * 109.47368 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47366 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.58497 * 306.16929 * 21 20 19 23 23 C 1.52965 * 109.59165 * 186.07792 * 21 20 19 24 24 C 1.54176 * 113.44477 * 206.63499 * 23 21 20 25 25 S 1.84231 * 103.82591 * 49.64543 * 24 23 21 26 26 S 1.83029 * 109.58943 * 66.45081 * 21 20 19 27 27 H 1.08997 * 109.47787 * 59.99589 * 1 2 3 28 28 H 1.09004 * 109.47370 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46838 * 299.99696 * 1 2 3 30 30 H 1.09001 * 109.47313 * 300.00620 * 5 3 2 31 31 H 1.08998 * 109.47072 * 60.00174 * 5 3 2 32 32 H 0.97008 * 120.00229 * 185.00941 * 10 9 7 33 33 H 1.09004 * 109.46912 * 304.97671 * 17 15 6 34 34 H 1.08998 * 109.47724 * 64.98450 * 17 15 6 35 35 H 1.08996 * 109.47180 * 300.00034 * 18 17 15 36 36 H 1.09005 * 109.47285 * 60.00073 * 18 17 15 37 37 H 1.09005 * 109.47031 * 300.00262 * 19 18 17 38 38 H 1.09000 * 109.46613 * 59.99551 * 19 18 17 39 39 H 1.09005 * 109.47132 * 300.00044 * 20 19 18 40 40 H 1.09001 * 109.47554 * 59.99573 * 20 19 18 41 41 H 1.09002 * 108.69886 * 327.68378 * 23 21 20 42 42 H 1.09007 * 108.69623 * 85.59300 * 23 21 20 43 43 H 1.08996 * 110.56098 * 291.05727 * 24 23 21 44 44 H 1.09000 * 110.68091 * 168.29033 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1755 3.3379 -1.1867 8 1 4.8139 4.2083 -1.2236 9 6 3.5508 2.8850 -2.3423 10 7 2.9153 1.7349 -2.3382 11 14 3.6140 3.9115 -3.9018 12 1 4.8094 3.5310 -4.6967 13 1 2.3883 3.6689 -4.7042 14 1 3.6949 5.3506 -3.5444 15 6 4.1733 3.3252 1.1677 16 8 3.9156 2.7719 2.2159 17 6 4.7077 4.7342 1.1709 18 6 4.9473 5.1855 2.6130 19 6 5.4904 6.6159 2.6163 20 6 5.7306 7.0670 4.0583 21 6 6.2732 8.4975 4.0616 22 1 7.1522 8.5564 3.4198 23 6 6.6565 8.8974 5.4874 24 6 6.5871 10.4171 5.7379 25 16 4.9262 10.8933 5.0988 26 16 4.9858 9.6434 3.4455 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9564 0.7804 0.8891 31 1 3.9556 0.7809 -0.8908 32 1 2.5417 1.3841 -3.1618 33 1 5.6470 4.7677 0.6189 34 1 3.9843 5.3983 0.6978 35 1 4.0080 5.1519 3.1651 36 1 5.6708 4.5215 3.0862 37 1 6.4298 6.6491 2.0643 38 1 4.7673 7.2801 2.1430 39 1 4.7915 7.0337 4.6107 40 1 6.4539 6.4026 4.5312 41 1 5.9832 8.3973 6.1836 42 1 7.6731 8.5568 5.6845 43 1 7.3722 10.9325 5.1847 44 1 6.6644 10.6356 6.8030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737859553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:10 Heat of formation + Delta-G solvation = -123.175614 kcal Electronic energy + Delta-G solvation = -26039.044909 eV Core-core repulsion = 22209.094716 eV Total energy + Delta-G solvation = -3829.950193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.106 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.41710 -38.35891 -37.09240 -35.49396 -34.58280 -34.22577 -31.54137 -30.99328 -28.64562 -27.05486 -26.05014 -24.67548 -23.13769 -21.95201 -20.95591 -20.04783 -19.18531 -18.94143 -16.97159 -16.62403 -16.50373 -16.11764 -15.84713 -15.47020 -15.15054 -15.13556 -14.71481 -14.36682 -14.27213 -14.01118 -13.67265 -13.14801 -12.85672 -12.72864 -12.55981 -12.44160 -12.18007 -12.04235 -11.61683 -11.48725 -11.32271 -11.20033 -11.18042 -10.97484 -10.90337 -10.72667 -10.65830 -10.53770 -10.45445 -10.37065 -10.15710 -9.77613 -9.76682 -9.48743 -8.97778 -8.56442 -7.94003 -7.45518 -6.43301 -4.06138 -0.72241 1.02267 1.83895 3.08401 3.18789 3.21721 3.55815 3.77673 3.81313 4.03623 4.11054 4.11074 4.35605 4.55459 4.71925 4.79750 4.98518 5.02226 5.03704 5.20833 5.22790 5.40415 5.56984 5.68931 5.73680 5.81226 5.84002 5.91762 5.99251 6.11053 6.18732 6.23276 6.31454 6.41397 6.59216 6.70522 6.79904 6.92711 7.32586 7.53972 7.68293 8.25670 8.98728 9.18941 9.38299 9.78178 10.58578 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.002273 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.715166 B =12313.488455 C =13226.197519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.491 3.509 4 O -0.514 6.514 5 C 0.156 3.844 6 N -0.436 5.436 7 C -0.325 4.325 8 H 0.103 0.897 9 C 0.041 3.959 10 N -0.887 5.887 11 Si 0.932 3.068 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.471 3.529 16 O -0.603 6.603 17 C -0.118 4.118 18 C -0.098 4.098 19 C -0.121 4.121 20 C -0.104 4.104 21 C -0.046 4.046 22 H 0.112 0.888 23 C -0.134 4.134 24 C -0.068 4.068 25 S -0.208 6.208 26 S -0.158 6.158 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.273 0.727 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.622 9.330 10.711 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.333 3.667 4 O -0.400 6.400 5 C 0.031 3.969 6 N -0.156 5.156 7 C -0.452 4.452 8 H 0.121 0.879 9 C -0.162 4.162 10 N -0.527 5.527 11 Si 0.759 3.241 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.261 3.739 16 O -0.489 6.489 17 C -0.158 4.158 18 C -0.136 4.136 19 C -0.159 4.159 20 C -0.144 4.144 21 C -0.176 4.176 22 H 0.130 0.870 23 C -0.176 4.176 24 C -0.218 4.218 25 S -0.091 6.091 26 S -0.042 6.042 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.604 10.145 10.435 15.982 hybrid contribution 0.957 -0.192 -0.602 1.147 sum 7.562 9.952 9.834 15.904 Atomic orbital electron populations 1.22906 0.79050 1.01692 1.01455 1.86464 1.21379 1.35643 1.85689 1.23985 0.92368 0.80371 0.69974 1.90498 1.66681 1.36495 1.46282 1.20659 0.86990 0.85627 1.03673 1.43394 1.58194 1.08468 1.05501 1.19665 1.27707 1.12660 0.85213 0.87928 1.25276 0.94382 0.96337 1.00191 1.69598 1.36631 1.18021 1.28476 0.85840 0.77708 0.80075 0.80500 1.20339 1.20813 1.19321 1.20330 0.82044 0.88130 0.83390 1.90529 1.57308 1.69119 1.31901 1.21365 1.02025 0.95174 0.97243 1.21276 1.01734 0.93927 0.96670 1.21699 1.01471 0.97708 0.95018 1.21781 1.02082 0.91191 0.99303 1.24098 0.97816 0.97693 0.97997 0.87005 1.22503 1.05166 0.94072 0.95811 1.24601 0.94188 0.97339 1.05675 1.90025 1.26281 1.58539 1.34239 1.90066 1.58047 1.32806 1.23257 0.92852 0.89671 0.93261 0.90906 0.84500 0.91637 0.90273 0.89654 0.91431 0.91831 0.91877 0.91371 0.90249 0.90175 0.89014 0.87724 0.88065 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.37 -8.37 10.57 -39.26 -0.41 -8.78 16 3 C 0.49 12.53 5.92 36.00 0.21 12.74 16 4 O -0.51 -14.65 15.94 -18.75 -0.30 -14.95 16 5 C 0.16 3.82 5.21 -5.20 -0.03 3.80 16 6 N -0.44 -10.98 2.11 -116.10 -0.25 -11.22 16 7 C -0.33 -8.09 9.14 -14.93 -0.14 -8.22 16 8 H 0.10 2.35 6.51 -52.48 -0.34 2.01 16 9 C 0.04 1.02 5.41 -17.47 -0.09 0.93 16 10 N -0.89 -22.87 8.21 55.50 0.46 -22.41 16 11 Si 0.93 19.72 29.57 -169.99 -5.03 14.69 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 15 C 0.47 11.31 7.61 -10.99 -0.08 11.22 16 16 O -0.60 -15.71 15.61 5.55 0.09 -15.62 16 17 C -0.12 -2.25 4.23 -27.88 -0.12 -2.36 16 18 C -0.10 -1.56 4.52 -26.73 -0.12 -1.68 16 19 C -0.12 -1.48 5.06 -26.73 -0.14 -1.61 16 20 C -0.10 -1.01 4.51 -26.74 -0.12 -1.13 16 21 C -0.05 -0.39 3.06 -26.75 -0.08 -0.47 16 22 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 23 C -0.13 -0.80 5.41 -26.13 -0.14 -0.94 16 24 C -0.07 -0.42 7.24 37.77 0.27 -0.14 16 25 S -0.21 -2.22 23.47 -89.81 -2.11 -4.33 16 26 S -0.16 -1.88 21.88 -89.81 -1.96 -3.85 16 27 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.88 8.13 -51.93 -0.42 0.45 16 30 H 0.07 1.69 7.49 -51.93 -0.39 1.30 16 31 H 0.14 3.35 6.28 -51.93 -0.33 3.03 16 32 H 0.27 6.78 8.32 -40.82 -0.34 6.44 16 33 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 34 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.07 1.18 8.05 -51.93 -0.42 0.77 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.92 7.22 -51.93 -0.37 0.54 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.58 7.84 -51.93 -0.41 0.17 16 42 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -32.50 383.52 -10.10 -42.60 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.86 Total: 4.10 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 0.49 Total: 13.99 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.21 Total: -33.64 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -0.63 Total: -39.35 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -4.07 Total: -8.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.50 -10.10 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737859553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.573 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds